Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F92757223
bond_fene_expand.html
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Sat, Nov 23, 11:39
Size
1 KB
Mime Type
text/html
Expires
Mon, Nov 25, 11:39 (1 d, 21 h)
Engine
blob
Format
Raw Data
Handle
22467287
Attached To
rLAMMPS lammps
bond_fene_expand.html
View Options
<HTML>
<CENTER><A
HREF =
"http://lammps.sandia.gov"
>
LAMMPS WWW Site
</A>
-
<A
HREF =
"Manual.html"
>
LAMMPS Documentation
</A>
-
<A
HREF =
"Section_commands.html#comm"
>
LAMMPS Commands
</A>
</CENTER>
<HR>
<H3>
bond_style fene/expand command
</H3>
<P><B>
Syntax:
</B>
</P>
<PRE>
bond_style fene/expand
</PRE>
<P><B>
Examples:
</B>
</P>
<PRE>
bond_style fene/expand
bond_coeff 1 30.0 1.5 1.0 1.0 0.5
</PRE>
<P><B>
Description:
</B>
</P>
<P>
The
<I>
fene/expand
</I>
bond style uses the potential
</P>
<CENTER><IMG
SRC =
"Eqs/bond_fene_expand.jpg"
>
</CENTER>
<P>
to define a finite extensible nonlinear elastic (FENE) potential
<A
HREF =
"#Kremer"
>
(Kremer)
</A>
, used for bead-spring polymer models. The first
term is attractive, the 2nd Lennard-Jones term is repulsive.
</P>
<P>
The
<I>
fene/expand
</I>
bond style is similar to
<I>
fene
</I>
except that an extra
shift factor of delta (positive or negative) is added to
<I>
r
</I>
to
effectively change the bead size of the bonded atoms. The first term
now extends to R0 + delta and the 2nd term is cutoff at 2^(1/6) sigma
+ delta.
</P>
<P>
The following coefficients must be defined for each bond type via the
<A
HREF =
"bond_coeff.html"
>
bond_coeff
</A>
command as in the example above, or in
the data file or restart files read by the
<A
HREF =
"read_data.html"
>
read_data
</A>
or
<A
HREF =
"read_restart.html"
>
read_restart
</A>
commands:
</P>
<UL><LI>
K (energy/distance^2)
<LI>
R0 (distance)
<LI>
epsilon (energy)
<LI>
sigma (distance)
<LI>
delta (distance)
</UL>
<P><B>
Restrictions:
</B>
none
</P>
<P><B>
Related commands:
</B>
</P>
<P><A
HREF =
"bond_coeff.html"
>
bond_coeff
</A>
,
<A
HREF =
"delete_bonds.html"
>
delete_bonds
</A>
</P>
<P><B>
Default:
</B>
none
</P>
<HR>
<A
NAME =
"Kremer"
></A>
<P><B>
(Kremer)
</B>
Kremer, Grest, J Chem Phys, 92, 5057 (1990).
</P>
</HTML>
Event Timeline
Log In to Comment