Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F92777276
accelerate_opt.html
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Sat, Nov 23, 15:35
Size
2 KB
Mime Type
text/html
Expires
Mon, Nov 25, 15:35 (1 d, 21 h)
Engine
blob
Format
Raw Data
Handle
22510984
Attached To
rLAMMPS lammps
accelerate_opt.html
View Options
<HTML>
<CENTER><A
HREF =
"Section_packages.html"
>
Previous Section
</A>
-
<A
HREF =
"http://lammps.sandia.gov"
>
LAMMPS WWW Site
</A>
-
<A
HREF =
"Manual.html"
>
LAMMPS Documentation
</A>
-
<A
HREF =
"Section_commands.html#comm"
>
LAMMPS Commands
</A>
</CENTER>
<HR>
<P><A
HREF =
"Section_accelerate.html"
>
Return to Section accelerate overview
</A>
</P>
<H4>
5.3.6 OPT package
</H4>
<P>
The OPT package was developed by James Fischer (High Performance
Technologies), David Richie, and Vincent Natoli (Stone Ridge
Technologies). It contains a handful of pair styles whose compute()
methods were rewritten in C++ templated form to reduce the overhead
due to if tests and other conditional code.
</P>
<P>
Here is a quick overview of how to use the OPT package. More details
follow.
</P>
<PRE>
make yes-opt
make mpi # build with the OPT pacakge
Make.py -v -p opt -o mpi -a file mpi # or one-line build via Make.py
</PRE>
<PRE>
lmp_mpi -sf opt -in in.script # run in serial
mpirun -np 4 lmp_mpi -sf opt -in in.script # run in parallel
</PRE>
<P><B>
Required hardware/software:
</B>
</P>
<P>
None.
</P>
<P><B>
Building LAMMPS with the OPT package:
</B>
</P>
<P>
The lines above illustrate how to build LAMMPS with the OPT package in
two steps, using the "make" command. Or how to do it with one command
via the src/Make.py script, described in
<A
HREF =
"Section_start.html#start_4"
>
Section
2.4
</A>
of the manual. Type "Make.py -h" for
help.
</P>
<P>
Note that if you use an Intel compiler to build with the OPT package,
the CCFLAGS setting in your Makefile.machine must include "-restrict".
The Make.py command will add this automatically.
</P>
<P><B>
Run with the OPT package from the command line:
</B>
</P>
<P>
As in the lines above, use the "-sf opt"
<A
HREF =
"Section_start.html#start_7"
>
command-line
switch
</A>
, which will automatically append
"opt" to styles that support it.
</P>
<P><B>
Or run with the OPT package by editing an input script:
</B>
</P>
<P>
Use the
<A
HREF =
"suffix.html"
>
suffix opt
</A>
command, or you can explicitly add an
"opt" suffix to individual styles in your input script, e.g.
</P>
<PRE>
pair_style lj/cut/opt 2.5
</PRE>
<P><B>
Speed-ups to expect:
</B>
</P>
<P>
You should see a reduction in the "Pair time" value printed at the end
of a run. On most machines for reasonable problem sizes, it will be a
5 to 20% savings.
</P>
<P><B>
Guidelines for best performance:
</B>
</P>
<P>
Just try out an OPT pair style to see how it performs.
</P>
<P><B>
Restrictions:
</B>
</P>
<P>
None.
</P>
</HTML>
Event Timeline
Log In to Comment