diff --git a/R-minimal/Dockerfile b/R-minimal/Dockerfile index 329507f..3ff3786 100644 --- a/R-minimal/Dockerfile +++ b/R-minimal/Dockerfile @@ -1,37 +1,37 @@ # For finding latest versions of the base image see # https://github.com/SwissDataScienceCenter/renkulab-docker -ARG RENKU_BASE_IMAGE=renku/renkulab-r:4.0.0-d2d0b9e +ARG RENKU_BASE_IMAGE=renku/renkulab-r:4.0.0-57d473c FROM ${RENKU_BASE_IMAGE} # RENKU_VERSION determines the version of the renku CLI # that will be used in this image. To find the latest version, # visit https://pypi.org/project/renku/#history. ARG RENKU_VERSION=0.11.1 # Uncomment and adapt if code is to be included in the image # COPY src /code/src # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines # except for the last end with backslash '\' to continue the RUN line # # USER root # RUN apt-get update && \ # apt-get install -y --no-install-recommends \ # apt-utils \ # vim # USER ${NB_USER} # install the R dependencies COPY install.R /tmp/ RUN R -f /tmp/install.R # install the python dependencies COPY requirements.txt /tmp/ RUN pip3 install -r /tmp/requirements.txt ######################################################## # Do not edit this section and do not add anything below RUN pipx install --force renku==${RENKU_VERSION} ######################################################## diff --git a/minimal/Dockerfile b/minimal/Dockerfile index f5da0f8..0566237 100644 --- a/minimal/Dockerfile +++ b/minimal/Dockerfile @@ -1,41 +1,41 @@ # For finding latest versions of the base image see # https://github.com/SwissDataScienceCenter/renkulab-docker -ARG RENKU_BASE_IMAGE=renku/renkulab-py:3.7-d2d0b9e +ARG RENKU_BASE_IMAGE=renku/renkulab-py:3.7-57d473c FROM ${RENKU_BASE_IMAGE} # RENKU_VERSION determines the version of the renku CLI # that will be used in this image. To find the latest version, # visit https://pypi.org/project/renku/#history. ARG RENKU_VERSION=0.11.1 # Uncomment and adapt if code is to be included in the image # COPY src /code/src # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines # except for the last end with backslash '\' to continue the RUN line # # USER root # RUN apt-get update && \ # apt-get install -y --no-install-recommends \ # apt-utils \ # vim # USER ${NB_USER} # Uncomment and adapt if you want to automatically install # python dependencies when the Docker image builds (pip or conda) # Note: you will need to add a (pip) requirements.txt file # AND a (conda) environment.yml file for the below code to run, # but you can remove one or the other. # # COPY requirements.txt environment.yml /tmp/ # RUN conda env update -q -f /tmp/environment.yml && \ # /opt/conda/bin/pip install -r /tmp/requirements.txt && \ # conda clean -y --all && \ # conda env export -n "root" ######################################################## # Do not edit this section and do not add anything below RUN pipx install --force renku==${RENKU_VERSION} ######################################################## diff --git a/python-minimal/Dockerfile b/python-minimal/Dockerfile index 4d0e262..fb60367 100644 --- a/python-minimal/Dockerfile +++ b/python-minimal/Dockerfile @@ -1,36 +1,36 @@ # For finding latest versions of the base image see # https://github.com/SwissDataScienceCenter/renkulab-docker -ARG RENKU_BASE_IMAGE=renku/renkulab-py:3.7-d2d0b9e +ARG RENKU_BASE_IMAGE=renku/renkulab-py:3.7-57d473c FROM ${RENKU_BASE_IMAGE} # RENKU_VERSION determines the version of the renku CLI # that will be used in this image. To find the latest version, # visit https://pypi.org/project/renku/#history. ARG RENKU_VERSION=0.11.1 # Uncomment and adapt if code is to be included in the image # COPY src /code/src # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines # except for the last end with backslash '\' to continue the RUN line # # USER root # RUN apt-get update && \ # apt-get install -y --no-install-recommends \ # apt-utils \ # vim # USER ${NB_USER} # install the python dependencies COPY requirements.txt environment.yml /tmp/ RUN conda env update -q -f /tmp/environment.yml && \ /opt/conda/bin/pip install -r /tmp/requirements.txt && \ conda clean -y --all && \ conda env export -n "root" ######################################################## # Do not edit this section and do not add anything below RUN pipx install --force renku==${RENKU_VERSION} ########################################################