Diffusion deconvolution 738a3f7b9f7e

Major update, new PSF, reorganization of the class Controller, few comments
738a3f7b9f7e
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Authored by dsage <dsage@192.168.0.10> on Apr 20 2017, 22:37.

Description

Major update, new PSF, reorganization of the class Controller, few comments

Details

Committed

dsage <dsage@192.168.0.10>

Apr 20 2017, 22:37

Pushed

sage	Apr 20 2017, 22:35

Parents

R2075:249e8e866d96: Update

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dsage <dsage@192.168.0.10> committed R2075:738a3f7b9f7e: Major update, new PSF, reorganization of the class Controller, few comments (authored by dsage <dsage@192.168.0.10>).Apr 20 2017, 22:37

Changes (154)

		Path
A		DeconvolutionLab2.config
M		DeconvolutionLab2/DeconvolutionLab2.config
M		DeconvolutionLab2/build.xml
M		DeconvolutionLab2/src/DeconvolutionLab2.java
A		DeconvolutionLab2/src/Display_FactorySignals.java
P		DeconvolutionLab2/src/bilib/component/BorderToggledButton.java Copied from DeconvolutionLab2/src/deconvolutionlab/splash/ImageLoader.java
M		DeconvolutionLab2/src/bilib/component/GridPanel.java
M		DeconvolutionLab2/src/bilib/component/GridToolbar.java
M		DeconvolutionLab2/src/bilib/component/HTMLPane.java
M		DeconvolutionLab2/src/bilib/component/PanelImage.java
M		DeconvolutionLab2/src/bilib/component/SpinnerRangeDouble.java
M		DeconvolutionLab2/src/bilib/component/SpinnerRangeFloat.java
M		DeconvolutionLab2/src/bilib/component/SpinnerRangeInteger.java
M		DeconvolutionLab2/src/bilib/table/CustomizedColumn.java
M		DeconvolutionLab2/src/bilib/table/CustomizedTable.java
A		DeconvolutionLab2/src/bilib/tools/Bessel.java
M		DeconvolutionLab2/src/bilib/tools/Files.java
M		DeconvolutionLab2/src/bilib/tools/NumFormat.java
M		DeconvolutionLab2/src/bilib/tools/WebBrowser.java
M		DeconvolutionLab2/src/course/DeconvolutionLab2_Course_Bigradient.java
M		DeconvolutionLab2/src/course/DeconvolutionLab2_Course_Border.java
M		DeconvolutionLab2/src/course/DeconvolutionLab2_Course_Noise.java
M		DeconvolutionLab2/src/course/DeconvolutionLab2_Course_Piecewise.java
M		DeconvolutionLab2/src/course/DeconvolutionLab2_Course_Resolution.java
M		DeconvolutionLab2/src/course/DeconvolutionLab2_MemoryFootprint.java
M		DeconvolutionLab2/src/deconvolution/Command.java
P		DeconvolutionLab2/src/deconvolution/CommandSegment.java Copied from DeconvolutionLab2/src/deconvolutionlab/splash/ImageLoader.java
M		DeconvolutionLab2/src/deconvolution/Deconvolution.java
M		DeconvolutionLab2/src/deconvolution/DeconvolutionDialog.java
D		DeconvolutionLab2/src/deconvolution/DeconvolutionListener.java
P		DeconvolutionLab2/src/deconvolution/Features.java Copied from DeconvolutionLab2/src/deconvolutionlab/splash/ImageLoader.java
M		DeconvolutionLab2/src/deconvolution/RegularizationPanel.java
A		DeconvolutionLab2/src/deconvolution/Stats.java
P		DeconvolutionLab2/src/deconvolution/Token.java Copied from DeconvolutionLab2/src/fft/academic/AcademicFFT_XYZ.java
M		DeconvolutionLab2/src/deconvolution/algorithm/AbstractAlgorithm.java
M		DeconvolutionLab2/src/deconvolution/algorithm/Controller.java
M		DeconvolutionLab2/src/deconvolution/algorithm/FISTA.java
M		DeconvolutionLab2/src/deconvolution/algorithm/ICTM.java
M		DeconvolutionLab2/src/deconvolution/algorithm/ISTA.java
M		DeconvolutionLab2/src/deconvolution/algorithm/Landweber.java
M		DeconvolutionLab2/src/deconvolution/algorithm/LandweberPositivity.java
M		DeconvolutionLab2/src/deconvolution/algorithm/NonStabilizedDivision.java
M		DeconvolutionLab2/src/deconvolution/algorithm/RichardsonLucy.java
M		DeconvolutionLab2/src/deconvolution/algorithm/RichardsonLucyTV.java
M		DeconvolutionLab2/src/deconvolution/algorithm/StarkParker.java
M		DeconvolutionLab2/src/deconvolution/algorithm/TikhonovMiller.java
M		DeconvolutionLab2/src/deconvolution/algorithm/VanCittert.java
A	(dir)	DeconvolutionLab2/src/deconvolution/capsule/
A		DeconvolutionLab2/src/deconvolution/capsule/AbstractCapsule.java
V		DeconvolutionLab2/src/deconvolution/{capsule/AlgorithmCapsule.java ← modules/AlgorithmDModule.java}
V		DeconvolutionLab2/src/deconvolution/{capsule/ImageCapsule.java ← modules/ImageDModule.java}
V		DeconvolutionLab2/src/deconvolution/{capsule/PSFCapsule.java ← modules/PSFDModule.java}
V		DeconvolutionLab2/src/deconvolution/{capsule/RecapCapsule.java ← modules/RecapDModule.java}
P		DeconvolutionLab2/src/deconvolution/capsule/ReportCapsule.java Copied from DeconvolutionLab2/src/signal/factory/Astigmatism.java
D		DeconvolutionLab2/src/deconvolution/modules
D		DeconvolutionLab2/src/deconvolution/modules/AbstractDModule.java
V		DeconvolutionLab2/src/deconvolution/{modules/AlgorithmDModule.java → capsule/AlgorithmCapsule.java}
V		DeconvolutionLab2/src/deconvolution/{modules/ImageDModule.java → capsule/ImageCapsule.java}
V		DeconvolutionLab2/src/deconvolution/{modules/PSFDModule.java → capsule/PSFCapsule.java}
V		DeconvolutionLab2/src/deconvolution/{modules/RecapDModule.java → capsule/RecapCapsule.java}
D		DeconvolutionLab2/src/deconvolution/modules/ReportDModule.java
M		DeconvolutionLab2/src/deconvolutionlab/LabPanel.java
M		DeconvolutionLab2/src/deconvolutionlab/Output.java
D		DeconvolutionLab2/src/deconvolutionlab/OutputCollection.java
D		DeconvolutionLab2/src/deconvolutionlab/TableStats.java
M		DeconvolutionLab2/src/deconvolutionlab/dialog/BatchDialog.java
M		DeconvolutionLab2/src/deconvolutionlab/dialog/SyntheticDialog.java
A	(dir)	DeconvolutionLab2/src/deconvolutionlab/module/
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/AboutModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/AbstractModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/AlgorithmModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/BatchModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/BorderModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/CommandModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module/ComputationModule.java ← modules/FFTModule.java}
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/ConfigModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/ControllerModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module/DirectoryModule.java ← modules/WatcherModule.java}
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/GroupedModulePanel.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/ImageModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/LanguageModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/LicenceModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/OutputModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/PSFModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/PreferencesModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{module ← modules}/RunningModule.java
D		DeconvolutionLab2/src/deconvolutionlab/modules
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/AboutModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/AbstractModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/AlgorithmModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/BatchModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/BorderModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/CommandModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/ConfigModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/ControllerModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules/FFTModule.java → module/ComputationModule.java}
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/GroupedModulePanel.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/ImageModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/LanguageModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/LicenceModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/OutputModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/PSFModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/PreferencesModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules → module}/RunningModule.java
V		DeconvolutionLab2/src/deconvolutionlab/{modules/WatcherModule.java → module/DirectoryModule.java}
D		DeconvolutionLab2/src/deconvolutionlab/splash
P		DeconvolutionLab2/src/deconvolutionlab/splash/ImageLoader.java Deleted after being copied to multiple locations: DeconvolutionLab2/src/bilib/component/BorderToggledButton.java DeconvolutionLab2/src/deconvolution/CommandSegment.java DeconvolutionLab2/src/deconvolution/Features.java DeconvolutionLab2/src/resources/ImageLoader.java
V		DeconvolutionLab2/src/{deconvolutionlab/splash → resources}/celegans.jpg
M		DeconvolutionLab2/src/fft/AbstractFFT.java
M		DeconvolutionLab2/src/fft/AbstractFFTLibrary.java
M		DeconvolutionLab2/src/fft/FFTPanel.java
M		DeconvolutionLab2/src/fft/academic/Academic.java
P		DeconvolutionLab2/src/fft/academic/AcademicFFT_XYZ.java Copied to DeconvolutionLab2/src/deconvolution/Token.java
M		DeconvolutionLab2/src/fft/academic/AcademicFFT_XY_Z.java
M		DeconvolutionLab2/src/fft/academic/AcademicLibrary.java
M		DeconvolutionLab2/src/fft/fftw/FFTW3D.java
M		DeconvolutionLab2/src/fft/fftw/FFTWLibrary.java
M		DeconvolutionLab2/src/fft/jtransforms/JTransforms.java
M		DeconvolutionLab2/src/fft/jtransforms/JTransformsFFT_XYZ.java
M		DeconvolutionLab2/src/fft/jtransforms/JTransformsFFT_XY_Z.java
M		DeconvolutionLab2/src/fft/jtransforms/JTransformsLibrary.java
A	(dir)	DeconvolutionLab2/src/resources/
V		DeconvolutionLab2/src/{resources ← deconvolutionlab/splash}/ImageLoader.java
V		DeconvolutionLab2/src/{resources ← deconvolutionlab/splash}/celegans.jpg
M		DeconvolutionLab2/src/signal/RealSignal.java
M		DeconvolutionLab2/src/signal/apodization/Apodization.java
P		DeconvolutionLab2/src/signal/factory/Airy.java Copied from DeconvolutionLab2/src/signal/factory/Defocus.java
P		DeconvolutionLab2/src/signal/factory/AirySimulated.java Deleted after being copied to multiple locations: DeconvolutionLab2/src/signal/factory/DirectionalDerivative.java DeconvolutionLab2/src/signal/factory/Laplacian.java
P		DeconvolutionLab2/src/signal/factory/Astigmatism.java Copied to DeconvolutionLab2/src/deconvolution/capsule/ReportCapsule.java
A		DeconvolutionLab2/src/signal/factory/AxialDiffractionSimulation.java
M		DeconvolutionLab2/src/signal/factory/Constant.java
M		DeconvolutionLab2/src/signal/factory/Cross.java
M		DeconvolutionLab2/src/signal/factory/Cube.java
V		DeconvolutionLab2/src/signal/factory/{CubeSphericalBeads.java ← GridSpots.java}
P		DeconvolutionLab2/src/signal/factory/Defocus.java Copied to DeconvolutionLab2/src/signal/factory/Airy.java
P		DeconvolutionLab2/src/signal/factory/DirectionalDerivative.java Copied from DeconvolutionLab2/src/signal/factory/AirySimulated.java
V		DeconvolutionLab2/src/signal/factory/{DirectionalMotionBlur.java ← MotionBlur.java}
M		DeconvolutionLab2/src/signal/factory/DoG.java
P		DeconvolutionLab2/src/signal/factory/DoubleConeWave.java Copied from DeconvolutionLab2/src/signal/factory/DoubleHelix.java
P		DeconvolutionLab2/src/signal/factory/DoubleHelix.java Copied to DeconvolutionLab2/src/signal/factory/DoubleConeWave.java
M		DeconvolutionLab2/src/signal/factory/Gaussian.java
D		DeconvolutionLab2/src/signal/factory/GridGroupedSpots.java
V		DeconvolutionLab2/src/signal/factory/{GridSpots.java → CubeSphericalBeads.java}
M		DeconvolutionLab2/src/signal/factory/Impulse.java
V		DeconvolutionLab2/src/signal/factory/{Laplacian.java ← AirySimulated.java}
V		DeconvolutionLab2/src/signal/factory/{MotionBlur.java → DirectionalMotionBlur.java}
M		DeconvolutionLab2/src/signal/factory/Ramp.java
M		DeconvolutionLab2/src/signal/factory/RandomLines.java
M		DeconvolutionLab2/src/signal/factory/SignalFactory.java
M		DeconvolutionLab2/src/signal/factory/Sinc.java
M		DeconvolutionLab2/src/signal/factory/Sphere.java
M		DeconvolutionLab2/src/signal/factory/Torus.java
M		DeconvolutionLab2/src/signal/factory/complex/ComplexSignalFactory.java
M		DeconvolutionLab2/src/signal/padding/Padding.java