diff --git a/shrine-webclient/src/main/html/i2b2_config_data.js b/shrine-webclient/src/main/html/i2b2_config_data.js
index c7055a079..e6e922154 100644
--- a/shrine-webclient/src/main/html/i2b2_config_data.js
+++ b/shrine-webclient/src/main/html/i2b2_config_data.js
@@ -1,24 +1,26 @@
{
urlProxy: "/shrine-proxy/request",
urlFramework: "js-i2b2/",
loginTimeout: 15, // in seconds
//JIRA|SHRINE-519:Charles McGow
username_label:"SHRINE Username:", //Username Label
password_label:"SHRINE Password:", //Password Label
clientHelpUrl: 'help/pdf/shrine-client-guide.pdf',
networkHelpUrl:'help/pdf/shrine-network-guide.pdf',
wikiBaseUrl: 'https://open.med.harvard.edu/wiki/display/SHRINE/',
+ obfuscation: 10,
+ resultName: "patients",
//JIRA|SHRINE-519:Charles McGow
// -------------------------------------------------------------------------------------------
// THESE ARE ALL THE DOMAINS A USER CAN LOGIN TO
lstDomains: [
{ domain: "i2b2demo",
name: "SHRINE",
urlCellPM: "http://127.0.0.1/i2b2/services/PMService/",
allowAnalysis: false,
debug: true,
isSHRINE: true
}
]
// -------------------------------------------------------------------------------------------
}
diff --git a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js
index 19a689f36..798408277 100644
--- a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js
+++ b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js
@@ -1,657 +1,630 @@
/**
* @projectDescription The Asynchronous Query Status controller (GUI-only controller).
* @inherits i2b2.CRC.ctrlr
* @namespace i2b2.CRC.ctrlr.QueryStatus
* @author Nick Benik, Griffin Weber MD PhD
* @version 1.0
* ----------------------------------------------------------------------------------------
* updated 8-10-09: Initial Creation [Nick Benik]
*/
function cgmUtcDateParser(dateString){
//Date format: 2011-02-21T14:35:03.480-05:00
try{
splitDateAndTime = dateString.split("T");
vrDate = splitDateAndTime[0].split("-");
vrTime = splitDateAndTime[1].split(":");
strYear = vrDate[0];
strMonth = vrDate[1] - 1;
strDay = vrDate[2];
/*
alert("Year: "+ strYear);
alert("Month: "+ strMonth);
alert("Day: "+ strDay);*/
strHours = vrTime[0];
strMins = vrTime[1];
strSecs = null;
strMills = null;
vSecs = vrTime[2].split(".");
strSecs = vSecs[0];
vMills = vSecs[1].split("-");
strMills = vMills[0];
/*
alert("Hours: "+ strHours);
alert("Minutes: "+ strMins);
alert("Seconds: "+ strSecs);
alert("MilliSeconds: "+ strMills);*/
return new Date(strYear, strMonth, strDay, strHours, strMins, strSecs, strMills);
}
catch(e){
return null;
}
}
i2b2.CRC.ctrlr.QueryStatus = function(dispDIV) { this.dispDIV = dispDIV; };
i2b2.CRC.ctrlr.currentQueryResults = null;
function trim(sString) {
while (sString.substring(0,1) == '\n') {
sString = sString.substring(1, sString.length);
}
while (sString.substring(sString.length-1, sString.length) == '\n') {
sString = sString.substring(0,sString.length-1);
}
return sString;
}
i2b2.CRC.ctrlr.QueryStatus.prototype = function() {
var private_singleton_isRunning = false;
var private_startTime = false;
var private_refreshInterrupt = false;
function private_refresh_status() {
// callback processor to check the Query Instance
var scopedCallbackQRSI = new i2b2_scopedCallback();
scopedCallbackQRSI.scope = self;
scopedCallbackQRSI.callback = function(results) {
if (results.error) {
alert(results.errorMsg);
return;
} else {
// find our query instance
var ri_list = results.refXML.getElementsByTagName('query_result_instance');
var l = ri_list.length;
for (var i=0; i<l; i++) {
var temp = ri_list[i];
var description = i2b2.h.XPath(temp, 'descendant-or-self::description')[0].firstChild.nodeValue;
self.dispDIV.innerHTML += "<div style=\"clear: both; padding-top: 10px; font-weight: bold;\">" + description + "</div>";
}
var crc_xml = results.refXML.getElementsByTagName('crc_xml_result');
l = crc_xml.length;
for (var i=0; i<l; i++) {
var temp = crc_xml[i];
var xml_value = i2b2.h.XPath(temp, 'descendant-or-self::xml_value')[0].firstChild.nodeValue;
var xml_v = i2b2.h.parseXml(xml_value);
var params = i2b2.h.XPath(xml_v, 'descendant::data[@column]/text()/..');
for (var i2 = 0; i2 < params.length; i2++) {
var name = params[i2].getAttribute("name");
if (i2b2.PM.model.isObfuscated) {
if ( params[i2].firstChild.nodeValue < 4) {
var value = "<3";
} else {
var value = params[i2].firstChild.nodeValue + "±3" ;
}
} else
{
var value = params[i2].firstChild.nodeValue;
}
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 20px; float: left; height: 16px; line-height: 16px;\">" + params[i2].getAttribute("column") + ": <font color=\"#0000dd\">" + value + "</font></div>";
}
var ri_id = i2b2.h.XPath(temp, 'descendant-or-self::result_instance_id')[0].firstChild.nodeValue;
}
//self.dispDIV.innerHTML += this.dispMsg;
}
}
var self = i2b2.CRC.ctrlr.currentQueryStatus;
// this private function refreshes the display DIV
var d = new Date();
var t = Math.floor((d.getTime() - private_startTime)/100)/10;
var s = t.toString();
if (s.indexOf('.') < 0) {
s += '.0';
}
if (private_singleton_isRunning) {
self.dispDIV.innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Running Query: "'+self.QM.name+'"</div>';
// display the current run duration
self.dispDIV.innerHTML += '<div style="float:right">['+s+' secs]</div>';
} else {
self.dispDIV.innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Finished Query: "'+self.QM.name+'"</div>';
self.dispDIV.innerHTML += '<div style="float:right">['+s+' secs]</div>';
// self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; height:16px; line-height:16px; "><div height:16px; line-height:16px; ">Compute Time: ' + (Math.floor((self.QI.end_date - self.QI.start_date)/100))/10 + ' secs</div></div>';
// self.dispDIV.innerHTML += '</div>';
$('runBoxText').innerHTML = "Run Query";
}
self.dispDIV.innerHTML += '</div>';
if ((!private_singleton_isRunning) && (undefined != self.QI.end_date)){
self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; line-height:16px; ">Compute Time: '+ (Math.floor((self.QI.end_date - self.QI.start_date)/100))/10 +' secs</div>';
}
var foundError = false;
for (var i=0; i < self.QRS.length; i++) {
var rec = self.QRS[i];
if (rec.QRS_time) {
var t = '<font color="';
switch(rec.QRS_Status) {
case "ERROR":
self.dispDIV.innerHTML += '<div style="clear:both; height:16px; line-height:16px; "><div style="float:left; font-weight:bold; height:16px; line-height:16px; ">'+rec.title+'</div><div style="float:right; height:16px; line-height:16px; "><font color="#dd0000">ERROR</font></div>';
// self.dispDIV.innerHTML += '<div style="float:right; height:16px; line-height:16px; "><font color="#dd0000">ERROR</font></div>'; //['+rec.QRS_time+' secs]</div>';
foundError = true;
break;
case "COMPLETED":
case "FINISHED":
foundError = false;
//t += '#0000dd">'+rec.QRS_Status;
break;
case "INCOMPLETE":
case "WAITTOPROCESS":
case "PROCESSING":
self.dispDIV.innerHTML += '<div style="clear:both; height:16px;line-height:16px; "><div style="float:left; font-weight:bold; height:16px; line-height:16px; ">'+rec.title+'</div><div style="float:right; height:16px; line-height:16px; "><font color="#00dd00">PROCESSING</font></div>';
// self.dispDIV.innerHTML += '<div style="float:right; height:16px; line-height:16px; "><font color="#00dd00">PROCESSING</font></div>'; //['+rec.QRS_time+' secs]</div>';
alert('Your query has timed out and has been rescheduled to run in the background. The results will appear in "Previous Queries"');
foundError = true;
//t += '#00dd00">'+rec.QRS_Status;
break;
}
t += '</font> ';
//self.dispDIV.innerHTML += '<div style="float:right; height:16px; line-height:16px; ">'+t+'['+rec.QRS_time+' secs]</div>';
}
self.dispDIV.innerHTML += '</div>';
if (foundError == false) {
if (rec.QRS_DisplayType == "CATNUM") {
//make call to get QRSI.
i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryResultInstanceId("CRC:QueryStatus", {qr_key_value: rec.QRS_ID}, scopedCallbackQRSI);
} else if ((rec.QRS_DisplayType == "LIST") && (foundError == false)) {
self.dispDIV.innerHTML += "<div style=\"clear: both; padding-top: 10px; font-weight: bold;\">" + rec.QRS_Description + "</div>";
} else if (i2b2.h.isDQ) {
self.dispDIV.innerHTML += "<div style=\"margin-left:20px; clear:both; height:16px; line-height:16px; \"><div style=\"float:left; height:16px; line-height:16px; \">" + rec.title + "</div><div style=\"float:right; height:16px; line-height:16px; \"><font color=\"#0000dd\">" + rec.QRS_Status + "</font> [" + rec.QRS_time + " secs]</div></div>";
}
if (rec.QRS_Type == "PATIENTSET") {
// Check to see if timeline is checked off, if so switch to timeline
var t2 = $('dialogQryRun').select('INPUT.chkQueryType');
for (var i=0;i<t2.length; i++) {
var curItem = t2[i].nextSibling.data;
if (curItem != undefined)
{
curItem = curItem.toLowerCase();
//curitem = curItem.trim();
}
if ((t2[i].checked == true) && (rec.size > 0) && (curItem == " timeline")
&& !(i2b2.h.isBadObjPath('i2b2.Timeline.cfg.config.plugin'))
) {
i2b2.hive.MasterView.setViewMode('Analysis');
i2b2.PLUGINMGR.ctrlr.main.selectPlugin("Timeline");
//Process PatientSet
rec.QM_id = self.QM.id;
rec.QI_id = self.QI.id;
rec.PRS_id = rec.QRS_ID;
rec.result_instance_id = rec.PRS_id;
var sdxData = {};
sdxData[0] = i2b2.sdx.Master.EncapsulateData('PRS', rec);
i2b2.Timeline.prsDropped(sdxData);
i2b2.Timeline.setShowMetadataDialog(false);
//Process Concepts, put all concepts in one large set
sdxData = {};
for (var j2 = 0; j2 < i2b2.CRC.model.queryCurrent.panels.length; j2++) {
var panel_list = i2b2.CRC.model.queryCurrent.panels[j2]
var panel_cnt = panel_list.length;
for (var p2 = 0; p2 < panel_cnt; p2++) {
// Concepts
for (var i2=0; i2 < panel_list[p2].items.length; i2++) {
sdxData[0] = panel_list[p2].items[i2];
i2b2.Timeline.conceptDropped(sdxData);
}
}
}
//$('Timeline-pgstart').value = '1';
//$('Timeline-pgsize').value = '10';
//i2b2.Timeline.pgGo(0);
i2b2.Timeline.yuiTabs.set('activeIndex', 1);
i2b2.Timeline.setShowMetadataDialog(true);
}
}
}
}
}
if ((undefined != self.QI.message) && (foundError == false)) {
self.dispDIV.innerHTML += '<div style="clear:both; float:left; padding-top: 10px; font-weight:bold">Status</div>';
var mySplitResult = self.QI.message.split("<?xml");
for(i3 = 1; i3 < mySplitResult.length; i3++){
var xml_v = i2b2.h.parseXml(trim("<?xml " + mySplitResult[i3]));
for (var i2 = 0; i2 < xml_v.childNodes.length; i2++) {
try {
if (i2b2.PM.model.isObfuscated) {
if (i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue < 4)
{
var value = "<3";
} else {
var value = i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue + "±3";
}
} else
{
var value = i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue;
}
self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; line-height:16px; ">' + i2b2.h.XPath(xml_v, 'descendant::name/text()/..')[i2].firstChild.nodeValue + '<font color="#0000dd">: ' + value + ' secs</font></div>';
//self.dispDIV.innerHTML += '<div style="float: left; height: 16px; margin-right: 100px; line-height: 16px;"><font color="#0000dd">: ' + i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue + ' secs</font></div>';
} catch (e) {}
}
}
}
self.dispDIV.style.display = 'none';
self.dispDIV.style.display = 'block';
if (!private_singleton_isRunning && private_refreshInterrupt) {
// make sure our refresh interrupt is turned off
try {
clearInterval(private_refreshInterrupt);
private_refreshInterrupt = false;
} catch (e) {}
}
}
function private_cancelQuery() {
if (private_singleton_isRunning) {
try {
var self = i2b2.CRC.ctrlr.currentQueryStatus;
i2b2.CRC.ctrlr.history.queryDeleteNoPrompt(self.QM.id);
clearInterval(private_refreshInterrupt);
private_refreshInterrupt = false;
private_singleton_isRunning = false;
$('runBoxText').innerHTML = "Run Query";
self.dispDIV.innerHTML += '<div style="clear:both; height:16px; line-height:16px; text-align:center; color:r#ff0000;">QUERY CANCELLED</div>';
i2b2.CRC.ctrlr.currentQueryStatus = false;
} catch (e) {}
}
}
function private_startQuery() {
var self = i2b2.CRC.ctrlr.currentQueryStatus;
var resultString = ""; //BG
if (private_singleton_isRunning) {
return false;
}
private_singleton_isRunning = true;
//BG
var downloadDataTab = $('infoDownloadStatusData');
if(downloadDataTab)
downloadDataTab.innerHTML="";
i2b2.CRC.ctrlr.currentQueryResults = new i2b2.CRC.ctrlr.QueryResults(resultString);
//BG
self.dispDIV.innerHTML = '<b>Processing Query: "'+this.name+'"</b>';
self.QM.name = this.name;
self.QRS = [];
self.QI = {};
// callback processor to run the query from definition
this.callbackQueryDef = new i2b2_scopedCallback();
this.callbackQueryDef.scope = this;
this.callbackQueryDef.callback = function(results) {
try
{
//if error
if (results.error) {
var temp = results.refXML.getElementsByTagName('response_header')[0];
if (undefined != temp) {
results.errorMsg = i2b2.h.XPath(temp, 'descendant-or-self::result_status/status')[0].firstChild.nodeValue;
if (results.errorMsg.substring(0,9) == "LOCKEDOUT")
{
results.errorMsg = 'As an "obfuscated user" you have exceeded the allowed query repeat and are now LOCKED OUT, please notify your system administrator.';
}
}
alert(results.errorMsg);
private_cancelQuery();
return;
}
//query was successful so update global settings.
clearInterval(private_refreshInterrupt);
private_refreshInterrupt = false;
private_singleton_isRunning = false;
resultString = ""; //BG
//update the ui
var self = i2b2.CRC.ctrlr.currentQueryStatus;
// this private function refreshes the display DIV
var d = new Date();
var t = Math.floor((d.getTime() - private_startTime)/100)/10;
var s = t.toString();
if (s.indexOf('.') < 0) {
s += '.0';
}
self.dispDIV.innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Finished Query: "'+self.QM.name+'"</div>';
self.dispDIV.innerHTML += '<div style="float:right">['+s+' secs]</div><br/>';
resultString += 'Finished Query: "' + self.QM.name + '"\n'; //BG
resultString += '[' + s + ' secs]\n'; //BG
$('runBoxText').innerHTML = "Run Query";
//------------ QI Logic -------------------//
//BG find user id
var temp = results.refXML.getElementsByTagName('query_master')[0];
//Update the userid element when query is run first time
var userId = i2b2.h.getXNodeVal(temp,'user_id');
if(userId)
{
var existingUserIdElemList = $$("#userIdElem");
if(existingUserIdElemList)
{
existingUserIdElemList.each(function(existingUserIdElem){
existingUserIdElem.remove();
});
}
$("crcQueryToolBox.bodyBox").insert(new Element('input',{'type':'hidden','id':'userIdElem','value':userId}));
}
//End BG
// find our query instance
var qi_list = results.refXML.getElementsByTagName('query_instance'); //Original code commented by BG
var l = qi_list.length;
for (var i=0; i<l; i++) {
var qiNode = qi_list[i];
var qi_id = i2b2.h.XPath(qiNode, 'descendant-or-self::query_instance_id')[0].firstChild.nodeValue;
this.QI.message = i2b2.h.getXNodeVal(qiNode, 'message');
//start date.
this.QI.start_date = i2b2.h.getXNodeVal(qiNode, 'start_date');
if (!Object.isUndefined(this.QI.start_date)) {
this.QI.start_date = new Date(this.QI.start_date.substring(0,4), this.QI.start_date.substring(5,7)-1, this.QI.start_date.substring(8,10), this.QI.start_date.substring(11,13),this.QI.start_date.substring(14,16),this.QI.start_date.substring(17,19),this.QI.start_date.substring(20,23));
}
//end date.
this.QI.end_date = i2b2.h.getXNodeVal(qiNode, 'end_date');
if (!Object.isUndefined(this.QI.end_date)) {
this.QI.end_date = new Date(this.QI.end_date.substring(0,4), this.QI.end_date.substring(5,7)-1, this.QI.end_date.substring(8,10), this.QI.end_date.substring(11,13),this.QI.end_date.substring(14,16),this.QI.end_date.substring(17,19),this.QI.end_date.substring(20,23));
}
// found the query instance, extract the info
this.QI.status = i2b2.h.XPath(qiNode, 'descendant-or-self::query_status_type/name')[0].firstChild.nodeValue;
this.QI.statusID = i2b2.h.XPath(qiNode, 'descendant-or-self::query_status_type/status_type_id')[0].firstChild.nodeValue;
}
//add the compute time.
self.dispDIV.innerHTML += '</div>';
resultString += '\n'; //BG
self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; line-height:16px; ">Compute Time: '+ s +' secs</div>';
resultString += 'Compute Time: '+ s + ' secs\n'; //BG
// -- query result instance vars -- //
var qriNodeList = results.refXML.getElementsByTagName('query_result_instance'),
qriIdx, qriNode, qriObj, breakdownType,
errorObjects = [],
brdNodeList, brdNode, brdIdx, brdObj;
//iterate through each query result.
for (qriIdx = 0; qriIdx < qriNodeList.length; qriIdx++) {
//init qri vars.
qriNode = qriNodeList[qriIdx];
qriObj = parseQueryResultInstance(qriNode);
breakdownType = '';
//which hospital
self.dispDIV.innerHTML += '<div style="clear:both;"><br/><div style="float:left; font-weight:bold; margin-left:20px;">' + qriObj.description + ' "' +self.QM.name+ '"</div>';
resultString += '\n'; //BG
resultString += qriObj.description + ' "' + self.QM.name+ '"\n'; //BG
//if there was an error display it.
if((qriObj.statusName == "ERROR") || (qriObj.statusName == "UNAVAILABLE")){
errorObjects.push(qriObj.problem);
self.dispDIV.innerHTML += " - <span title='" + qriObj.statusDescription +"'> <b><a class='query-error-anchor' href='#' style='color:#ff0000'> <b><span color='#ff0000'>" + qriObj.problem.summary+ "</span></b></a></b></span>";
resultString += 'ERROR : ' + qriObj.problem.summary + '\n'; //BG
continue;
}
else if((qriObj.statusName == "PROCESSING")){
self.dispDIV.innerHTML += " - <span><b><font color='#00dd00'>Still Processing Request</font></b></span>";
resultString += 'Still Processing Request : Still Processing Request\n'; //BG
continue;
}
else if(["COMPLETED","FINISHED"].indexOf(qriObj.statusName) < 0){
self.dispDIV.innerHTML += " - <span><b><font color='#dd0000'>Results not available</font></b></span>";
resultString += 'Results not available : Results not available\n'; //BG
continue;
}
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 30px; float: left; height: 16px; line-height: 16px;\">"
+ "Patient Count"
+ ": <font color=\"#0000dd\">"
- + getObfuscatedResult(qriObj.setSize, 10)
+ + i2b2.h.getFormattedResult(qriObj.setSize)
+ "</font></div>";
- resultString += 'Patient Count' + getObfuscatedResult(qriObj.setSize, 10) + '\n'; //BG
+ resultString += 'Patient Count' + i2b2.h.getFormattedResult(qriObj.setSize) + '\n'; //BG
//grab breakdown data.
brdNodeList = i2b2.h.XPath(qriNode, 'descendant-or-self::breakdown_data/column');
for(brdIdx = 0; brdIdx < brdNodeList.length; brdIdx ++){
//init brd vars.
brdNode = brdNodeList[brdIdx];
brdObj = parseBreakdown(brdNode);
if(brdObj.parentResultType !== breakdownType){
breakdownType = brdObj.parentResultType;
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 30px; float: left; height: 16px; line-height: 16px;\"><br/><font>"
+ getBreakdownTitle(brdObj.parentResultType)
+ ":</font></div>";
resultString += '\n'; //BG
resultString += getBreakdownTitle(brdObj.parentResultType) + '\n'; //BG
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 40px; float: left; height: 16px; line-height: 16px;\"></div>";
}
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 40px; float: left; height: 16px; line-height: 16px;\">"
+ brdObj.name
+ ": <font color=\"#0000dd\">"
- + getObfuscatedResult(brdObj.value, 10)
+ + i2b2.h.getFormattedResult(brdObj.value)
+ "</font></div>";
- resultString += brdObj.name + getObfuscatedResult(brdObj.value, 10) + '\n'; //BG
+ resultString += brdObj.name + i2b2.h.getFormattedResult(brdObj.value) + '\n'; //BG
}
}
i2b2.CRC.ctrlr.currentQueryResults = new i2b2.CRC.ctrlr.QueryResults(resultString);
$hrine.EnhancedError.createErrorDialogue(self.dispDIV, errorObjects);
i2b2.CRC.ctrlr.history.Refresh();
}
catch(err)
{
console.error(err);
}
}
/**
*
* @param qriNode
* @returns {{qiStatusName: string, qiStatusDescription: string, qiSetSize: string, qiDescription: string, qiResultName: string, qiResultDescription: string}}
*/
function parseQueryResultInstance(qriNode){
var qriObj = {
statusName: grabXmlNodeData(qriNode, 'descendant-or-self::query_status_type/name'),
statusDescription: grabXmlNodeData(qriNode, 'descendant-or-self::query_status_type/description'),
description: grabXmlNodeData(qriNode, 'descendant-or-self::description')
};
if(qriObj.statusName == "ERROR"){
qriObj.problem = $hrine.EnhancedError.parseProblem(qriNode);
return qriObj;
}
qriObj.setSize = grabXmlNodeData(qriNode, 'descendant-or-self::set_size');
qriObj.resultName = grabXmlNodeData(qriNode, 'descendant-or-self::query_result_type/name');
qriObj.resultDescription = grabXmlNodeData(qriNode, 'descendant-or-self::query_result_type/description');
return qriObj;
}
/**
*
* @param brdNode
*/
function parseBreakdown(brdNode){
var brdObj = {
name: grabXmlNodeData(brdNode, 'name'),
value: grabXmlNodeData(brdNode, 'value'),
parentResultType: grabXmlNodeData(brdNode, 'parent::breakdown_data/resultType')
}
return brdObj;
}
/**
* Return breakdown title based on breakdown type.
* @param breakdownType
* @returns {*}
*/
function getBreakdownTitle(breakdownType) {
return {
'PATIENT_AGE_COUNT_XML': 'Patient Age Count Breakdown',
'PATIENT_GENDER_COUNT_XML': 'Patient Gender Count Breakdown',
'PATIENT_RACE_COUNT_XML': 'Patient Race Count Breakdown',
'PATIENT_VITALSTATUS_COUNT_XML':'Patient Vital Status Count Breakdown'
}[breakdownType];
};
- /**
- * Method for hiding the precise value of a query below a certain result.
- * @param resultCount - the number of results from a query.
- * @param obfuscationSetting - do not reveal this number of results
- */
- function getObfuscatedResult(resultCount, obfuscationSetting) {
-
- var resultTitle = " - ",
- name = " patients",
- offsetText = " +-10", // todo fix with SHRINE-1716
- isException = i2b2.PM.model.isObfuscated === false;
-
- //default to 10.
- obfuscationSetting = (arguments.length > 1) ? arguments[1] : 10;
-
- //if user role is an exception. return result.
- if (isException) {
- return resultTitle += resultCount + name;
- }
-
- resultTitle += ((resultCount >= obfuscationSetting)?
- resultCount + offsetText + name: obfuscationSetting + name + " or fewer");
-
- return resultTitle;
- }
-
-
/**
* Grab data for node, return empty string if none.
* @param node
* @param xPathString
* @returns {string}
*/
function grabXmlNodeData(node, xPathString){
var nodeVal = i2b2.h.XPath(node, xPathString);
return (nodeVal.length)? nodeVal[0].firstChild.nodeValue : '';
}
// switch to status tab
i2b2.CRC.view.status.showDisplay();
// timer and display refresh stuff
private_startTime = new Date();
private_refreshInterrupt = setInterval("i2b2.CRC.ctrlr.currentQueryStatus.refreshStatus()", 100);
// AJAX call
i2b2.CRC.ajax.runQueryInstance_fromQueryDefinition("CRC:QueryTool", this.params, this.callbackQueryDef);
}
return {
name: "",
polling_interval: 1000,
QM: {id:false, status:""},
QI: {id:false, status:""},
QRS:{},
displayDIV: false,
running: false,
started: false,
startQuery: function(queryName, ajaxParams) {
this.name = queryName;
this.params = ajaxParams;
private_startQuery.call(this);
},
cancelQuery: function() {
private_cancelQuery();
},
isQueryRunning: function() {
return private_singleton_isRunning;
},
refreshStatus: function() {
private_refresh_status();
}
};
}();
i2b2.CRC.ctrlr.currentQueryStatus = false;
diff --git a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryTool.js b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryTool.js
index 983206931..e7138bd75 100644
--- a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryTool.js
+++ b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryTool.js
@@ -1,2951 +1,2955 @@
/**
* @projectDescription Event controller for CRC's Query Tool.
* @inherits i2b2.CRC.ctrlr
* @namespace i2b2.CRC.ctrlr.QT
* @author Nick Benik, Griffin Weber MD PhD
* @version 1.3
* ----------------------------------------------------------------------------------------
* updated 9-15-08: RC4 launch [Nick Benik]
*/
console.group('Load & Execute component file: CRC > ctrlr > QueryTool');
console.time('execute time');
i2b2.CRC.ctrlr.QT = new QueryToolController();
function QueryToolController() {
i2b2.CRC.model.queryCurrent = {};
this.queryIsDirty = true;
this.queryIsRunning = false;
this.queryNamePrompt = false;
this.queryTiming = 'ANY';
this.temporalGroup = 0;
this.tenporalBuilders = 0;
this.hasModifier = false;
this.queryNameDefault = 'New Query';
this.queryStatusDefaultText = 'Drag query items to one or more groups then click Run Query.';
this.panelControllers = [];
this.panelControllers[0] = new i2b2_PanelController(this);
this.panelControllers[1] = new i2b2_PanelController(this);
this.panelControllers[2] = new i2b2_PanelController(this);
// ================================================================================================== //
this.doSetQueryName = function(inName) {
this.queryIsDirty = true;
$('queryName').innerHTML = inName;
i2b2.CRC.model.queryCurrent.name = inName;
}
// ================================================================================================== //
this.doQueryClear = function() {
// function to clear query from memory
delete i2b2.CRC.model.queryCurrent;
delete i2b2.CRC.ctrlr.currentQueryResults;
i2b2.CRC.model.queryCurrent = {};
i2b2.CRC.ctrlr.QT.temporalGroup = 0;
var dm = i2b2.CRC.model.queryCurrent;
dm.panels = [];
dm.panels[0] = new Array();
dm.panels[1] = new Array();
dm.panels[2] = new Array();
this.doSetQueryName.call(this,'');
this.doShowFrom(0);
this._redrawPanelCount();
this.queryNamePrompt = false;
this.queryIsDirty = true;
this.hasModifier = false;
$('infoQueryStatusText').innerHTML = "";
$('infoQueryStatusChart').innerHTML = "";
$('infoQueryStatusReport').innerHTML = "";
$('infoDownloadStatusData').innerHTML = "";
$('crc.temoralBuilder').hide();
$('crc.innerQueryPanel').show();
this.panelControllers[0].refTitle.innerHTML = 'Group 1';
$("defineTemporal-button").innerHTML = "Population in which events occur";
i2b2.CRC.view.QT.setQueryTiming(0);
}
// ================================================================================================== //
this.doQueryLoad = function(qm_id) { // function to load query from history
// clear existing query
i2b2.CRC.ctrlr.QT.doQueryClear();
// show on GUI that work is being done
i2b2.h.LoadingMask.show();
// callback processor
var scopedCallback = new i2b2_scopedCallback();
scopedCallback.scope = this;
scopedCallback.callback = function(results) {
var cl_queryMasterId = qm_id;
// THIS function is used to process the AJAX results of the getChild call
// results data object contains the following attributes:
// refXML: xmlDomObject <--- for data processing
// msgRequest: xml (string)
// msgResponse: xml (string)
// error: boolean
// errorStatus: string [only with error=true]
// errorMsg: string [only with error=true]
i2b2.CRC.view.QT.queryRequest = results.msgRequest;
i2b2.CRC.view.QT.queryResponse = results.msgResponse;
// switch to status tab
i2b2.CRC.view.status.showDisplay();
// did we get a valid query definition back?
var qd = i2b2.h.XPath(results.refXML, 'descendant::query_name/..');
if (qd.length != 0) {
i2b2.CRC.ctrlr.QT.doQueryClear();
var dObj = {};
//1.17 dObj.name = i2b2.h.getXNodeVal(results.refXML,'name');
dObj.name = i2b2.h.getXNodeVal(results.refXML,'query_name');
$('queryName').innerHTML = dObj.name;
dObj.specificity = i2b2.h.getXNodeVal(qd[0],'specificity_scale');
dObj.panels = []; //1.17
for (var j=0; j <qd.length; j++) {
/* 1.17
qp variable initialization was if else for i2b2.
if (j==0)
var qp = i2b2.h.XPath(qd[j], 'panel');
else
*/
var qp = i2b2.h.XPath(qd[j], 'descendant::panel');//1.17
var total_panels = qp.length;
for (var i1=0; i1<total_panels; i1++) {
//1.17 i2b2.CRC.ctrlr.QT.temporalGroup = j;
i2b2.CRC.ctrlr.QT.temporalGroup = 0; //1.17
//1.17 i2b2.CRC.ctrlr.QT._redrawAllPanels();
// extract the data for each panel
var po = {};
po.panel_num = i2b2.h.getXNodeVal(qp[i1],'panel_number');
var t = i2b2.h.getXNodeVal(qp[i1],'invert');
po.exclude = (t=="1");
//po.timing = i2b2.h.getXNodeVal(qp[i1],'panel_timing');
// 1.4 queries don't have panel_timing, and undefined doesn't work
// so default to ANY
po.timing = i2b2.h.getXNodeVal(qp[i1],'panel_timing') || 'ANY';
i2b2.CRC.view.QT.setPanelTiming(po.panel_num, po.timing);
var t = i2b2.h.getXNodeVal(qp[i1],'total_item_occurrences');
po.occurs = (1*t)-1;
//1.17 var t = i2b2.h.getXNodeVal(qp[i1],'panel_accuracy_scale');
// 1.17 po.relevance = t;
var t = i2b2.h.getXNodeVal(qp[i1],'panel_date_from');
if (t) {
//section added for 1.17
t = t.replace('Z','');
t = t.split('-');
po.dateFrom = {};
po.dateFrom.Year = t[0];
po.dateFrom.Month = t[1];
po.dateFrom.Day = t[2];
/**
* Commented out for 1.17.
po.dateFrom = {};
po.dateFrom.Year = t.substring(0,4); //t[0];
po.dateFrom.Month = t.substring(5,7); //t[1];
po.dateFrom.Day = t.substring(8,10); //t[2];
**/
} else {
po.dateFrom = false;
}
var t = i2b2.h.getXNodeVal(qp[i1],'panel_date_to');
if (t) {
//added for 1.17
t = t.replace('Z','');
t = t.split('-');
po.dateTo = {};
po.dateTo.Year = t[0];
po.dateTo.Month = t[1];
po.dateTo.Day = t[2];
/**
* Commented out for 1.17.
po.dateTo = {};
po.dateTo.Year = t.substring(0,4); //t[0];
po.dateTo.Month = t.substring(5,7); // t[1];
po.dateTo.Day = t.substring(8,10);// t[2];
*/
} else {
po.dateTo = false;
}
//process query items.
po.items = [];
var pi = i2b2.h.XPath(qp[i1], 'descendant::item[item_key]');
for (i2=0; i2<pi.length; i2++) {
var item = {};
// get the item's details from the ONT Cell
var ckey = i2b2.h.getXNodeVal(pi[i2],'item_key');
//1.17 WE MUST QUERY THE ONT CELL TO BE ABLE TO DISPLAY THE TREE STRUCTURE CORRECTLY
var cdetails = i2b2.ONT.ajax.GetTermInfo("CRC:QueryTool", {concept_key_value:ckey, ont_synonym_records: true, ont_hidden_records: true} );
//1.17 this is what comes out of the old AJAX call
var c = i2b2.h.XPath(cdetails.refXML, 'descendant::concept');
//this entire if block is for 1.17.
if (c.length > 0) {
c = c[0];
var o = new Object;
o.xmlOrig = c;
o.table_name = i2b2.h.getXNodeVal(c,'tablename');
o.column_name = i2b2.h.getXNodeVal(c,'columnname');
o.operator = i2b2.h.getXNodeVal(c,'operator');
o.icd9 = i2b2.h.getXNodeVal(c,'basecode');
o.level = i2b2.h.getXNodeVal(c,'level');
o.name = i2b2.h.getXNodeVal(c,'name');
o.key = i2b2.h.getXNodeVal(c,'key');
o.tooltip = i2b2.h.getXNodeVal(c,'tooltip');
o.dim_code = i2b2.h.getXNodeVal(c,'dimcode');
o.visual_attribs = i2b2.h.getXNodeVal(c,'visualattributes');
o.hasChildren = i2b2.h.getXNodeVal(c,'visualattributes').substring(0,2);
// these are not needed?
o.fact_table_column = i2b2.h.getXNodeVal(c,'facttablecolumn');
o.column_name_datatype = i2b2.h.getXNodeVal(c,'columndatatype');
o.synonym_cd = i2b2.h.getXNodeVal(c,'synonym_cd');
o.totalnum = i2b2.h.getXNodeVal(c,'totalnum');
//1.17 process lab values.
var lvd = i2b2.h.XPath(pi[i2], 'descendant::constrain_by_value');
if (lvd.length>0){
lvd = lvd[0];
// pull the LabValue definition for concept
var lvdef = i2b2.h.XPath(c, "descendant::metadataxml/ValueMetadata[Loinc]");
if (lvdef.length > 0) {
lvdef = lvdef[0];
} else {
lvdef = false;
}
// extract & translate
var t = i2b2.h.getXNodeVal(lvd,"value_constraint");
o.LabValues = {};
o.LabValues.NumericOp = i2b2.h.getXNodeVal(lvd,"value_operator");
o.LabValues.GeneralValueType = i2b2.h.getXNodeVal(lvd,"value_type");
switch(o.LabValues.GeneralValueType) {
case "NUMBER":
o.LabValues.MatchBy = "VALUE";
if (t.indexOf(' and ')!=-1) {
// extract high and low values
t = t.split(' and ');
o.LabValues.ValueLow = t[0];
o.LabValues.ValueHigh = t[1];
} else {
o.LabValues.Value = t;
}
break;
case "STRING":
o.LabValues.MatchBy = "VALUE";
o.LabValues.ValueString = t;
break;
case "TEXT": // this means Enum?
o.LabValues.MatchBy = "VALUE";
try {
o.LabValues.ValueEnum = eval("(Array"+t+")");
} catch(e) {
console.error("Conversion Failed: Lab Value data = "+t);
}
break;
case "FLAG":
o.LabValues.MatchBy = "FLAG";
o.LabValues.ValueFlag = t
break;
default:
o.LabValues.Value = t;
}
}//1.17 end lab values section
var sdxDataNode = i2b2.sdx.Master.EncapsulateData('CONCPT',o);
if (o.LabValues) {
// We do want 2 copies of the Lab Values: one is original from server while the other one is for user manipulation
sdxDataNode.LabValues = o.LabValues;
}
//push item on po.
po.items.push(sdxDataNode);
} else {
console.error("CRC's ONT Handler could not get term details about '"+ckey+"'!");
}
}
dObj.panels[po.panel_num] = po;
}
// reindex the panels index (panel [1,3,5] should be [0,1,2])
dObj.panels = dObj.panels.compact();
i2b2.CRC.model.queryCurrent.panels[j] = dObj.panels;
var qpc = i2b2.CRC.ctrlr.QT.panelControllers[0];
var dm = i2b2.CRC.model.queryCurrent;
for (var k=0; k<dm.panels.length; k++) {
//length of panels should always be 1.
for (var pi=0; pi<dm.panels[k].length; pi++) {
// create a treeview root node and connect it to the treeview controller
dm.panels[k][pi].tvRootNode = new YAHOO.widget.RootNode(qpc.yuiTree);
qpc.yuiTree.root = dm.panels[k][pi].tvRootNode;
dm.panels[k][pi].tvRootNode.tree = qpc.yuiTree;
qpc.yuiTree.setDynamicLoad(i2b2.CRC.ctrlr.QT._loadTreeDataForNode,1);
// load the treeview with the data
var tvRoot = qpc.yuiTree.getRoot();
for (var pii=0; pii<dm.panels[k][pi].items.length; pii++) {
var withRenderData = qpc._addConceptVisuals(dm.panels[k][pi].items[pii], tvRoot, false);
if (dm.panels[k][pi].items[pii].ModValues)
{
withRenderData.ModValues = dm.panels[k][pi].items[pii].ModValues;
}
if (dm.panels[k][pi].items[pii].LabValues)
{
withRenderData.LabValues = dm.panels[k][pi].items[pii].LabValues;
}
dm.panels[k][pi].items[pii] = withRenderData;
}
}
}
// redraw the Query Tool GUI
i2b2.CRC.ctrlr.QT._redrawPanelCount();
i2b2.CRC.ctrlr.QT.doScrollFirst();
// hide the loading mask
i2b2.h.LoadingMask.hide();
}
i2b2.CRC.ctrlr.QT.temporalGroup = 0;
i2b2.CRC.ctrlr.QT._redrawAllPanels();
}
}
// AJAX CALL
i2b2.CRC.ajax.getRequestXml_fromQueryMasterId("CRC:QueryTool", { qm_key_value: qm_id }, scopedCallback);
}
// ================================================================================================== //
this.doQueryRun = function() {
// function to build and run query
if (i2b2.CRC.ctrlr.currentQueryStatus != false && i2b2.CRC.ctrlr.currentQueryStatus.isQueryRunning()) {
i2b2.CRC.ctrlr.currentQueryStatus.cancelQuery();
i2b2.CRC.ctrlr.currentQueryStatus = false;
//alert('A query is already running.\n Please wait until the currently running query has finished.');
return void(0);
}
/*
* Method added for edge case where
* dragging previous query does not add items to panel. Will occur when ontology
* @param panels
*/
function hasItems(panel) {
return panel.length > 0 && panel[0].items.length > 0;
}
if (i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length < 1) {
alert('You must enter at least one concept to run a query.');
return void(0);
}
// make sure a shrine topic has been selected
if (i2b2.PM.model.shrine_domain) {
var topicSELECT = $('queryTopicSelect');
//@pcori_webclient
if(topicSELECT){
if (topicSELECT.selectedIndex == null || topicSELECT.selectedIndex == 0) {
alert('You must select a Topic to run a SHRINE query.');
return void(0);
}
var topicid = topicSELECT.options[topicSELECT.selectedIndex].value;
}
}
// callback for dialog submission
var handleSubmit = function() {
// submit value(s)
if(this.submit()) {
// run the query
var t = $('dialogQryRun');
var queryNameInput = t.select('INPUT.inputQueryName')[0];
var options = {};
var t2 = t.select('INPUT.chkQueryType');
for (var i=0;i<t2.length; i++) {
if (t2[i].checked == true) {
options['chk_'+t2[i].value] = t2[i].checked;
}
}
$('queryName').innerHTML = queryNameInput.value;
i2b2.CRC.model.queryCurrent.name = queryNameInput.value;
i2b2.CRC.ctrlr.QT._queryRun(queryNameInput.value, options);
}
}
// display the query name input dialog
this._queryPromptRun(handleSubmit);
// autogenerate query name
var myDate=new Date();
var hours = myDate.getHours()
if (hours < 10){
hours = "0" + hours
}
var minutes = myDate.getMinutes()
if (minutes < 10){
minutes = "0" + minutes
}
var seconds = myDate.getSeconds()
if (seconds < 10){
seconds = "0" + seconds
}
//var ds = myDate.toLocaleString();
var ts = hours + ":" + minutes + ":" + seconds; //ds.substring(ds.length-5,ds.length-13);
var defQuery = this._getQueryXML.call(this);
var qn = defQuery.queryAutoName+'@'+ts;
// display name
var queryNameInput = $('dialogQryRun').select('INPUT.inputQueryName')[0];
queryNameInput.value = qn;
}
// ================================================================================================== //
this._queryRun = function(inQueryName, options) {
// make sure name is not blank
if (inQueryName.blank()) {
alert('Cannot run query with without providing a name!');
return;
}
// Query Parameters
var query_definition = this._getQueryXML(inQueryName);
var params = {
result_wait_time: i2b2.CRC.view.QT.params.queryTimeout,
psm_query_definition: query_definition.queryXML
}
// SHRINE topic if we are running SHRINE query
if (i2b2.h.isSHRINE()) {
var topicSELECT = $('queryTopicSelect');
//@pcori_webclient
if(topicSELECT){
if (topicSELECT.selectedIndex == null || topicSELECT.selectedIndex == 0) {
alert("Please select a Topic to run the query.");
return false;
}
params.shrine_topic = "<shrine><queryTopicID>"+topicSELECT.options[topicSELECT.selectedIndex].value+"</queryTopicID></shrine>";
}
}
// generate the result_output_list (for 1.3 backend)
var result_output = "";
for(var name in options)
{
if (name) {
i++;
result_output += '<result_output priority_index="'+i+'" name="' + name.substring(4).toLowerCase() + '"/>\n';
}
}
//@pcori_webclient
//result_output = '<result_output priority_index="11" name="patient_count_xml"/>';
params.psm_result_output = '<result_output_list>'+result_output+'</result_output_list>\n';
// create query object
$('runBoxText').innerHTML = "Cancel Query";
i2b2.CRC.ctrlr.currentQueryStatus = new i2b2.CRC.ctrlr.QueryStatus($('infoQueryStatusText'));
i2b2.CRC.ctrlr.currentQueryStatus.startQuery(inQueryName, params);
}
// ================================================================================================== //
this._queryRunningTime = function() {
if (i2b2.CRC.ctrlr.QT.queryIsRunning) {
var d = new Date();
var t = Math.floor((d.getTime() - queryStartTime)/100)/10;
var el = $('numSeconds');
if (el) {
var s = t.toString();
if (s.indexOf('.') < 0) {
s += '.0';
}
el.innerHTML = s;
window.setTimeout('i2b2.CRC.ctrlr.QT._queryRunningTime()',100);
}
}
}
// ================================================================================================== //
this._queryPromptRun = function(handleSubmit) {
if (!i2b2.CRC.view.dialogQryRun) {
var handleCancel = function() {
this.cancel();
};
var loopBackSubmit = function() {
i2b2.CRC.view.dialogQryRun.submitterFunction();
};
i2b2.CRC.view.dialogQryRun = new YAHOO.widget.SimpleDialog("dialogQryRun", {
width: "400px",
fixedcenter: true,
constraintoviewport: true,
modal: true,
zindex: 700,
buttons: [{
text: "OK",
handler: loopBackSubmit,
isDefault: true
}, {
text: "Cancel",
handler: handleCancel
}]
});
$('dialogQryRun').show();
i2b2.CRC.view.dialogQryRun.validate = function(){
// now process the form data
var msgError = '';
var queryNameInput = $('dialogQryRun').select('INPUT.inputQueryName')[0];
if (!queryNameInput || queryNameInput.value.blank()) {
alert('Please enter a name for this query.');
return false;
}
return true;
};
i2b2.CRC.view.dialogQryRun.render(document.body);
}
// manage the event handler for submit
delete i2b2.CRC.view.dialogQryRun.submitterFunction;
i2b2.CRC.view.dialogQryRun.submitterFunction = handleSubmit;
// display the dialoge
i2b2.CRC.view.dialogQryRun.center();
i2b2.CRC.view.dialogQryRun.show();
}
// ================================================================================================== //
this._queryPromptName = function(handleSubmit) {
if (!i2b2.CRC.view.dialogQmName) {
var handleCancel = function() {
this.cancel();
};
var loopBackSubmit = function() {
i2b2.CRC.view.dialogQmName.submitterFunction();
};
i2b2.CRC.view.dialogQmName = new YAHOO.widget.SimpleDialog("dialogQmName", {
width: "400px",
fixedcenter: true,
constraintoviewport: true,
modal: true,
zindex: 700,
buttons: [{
text: "OK",
handler: loopBackSubmit,
isDefault: true
}, {
text: "Cancel",
handler: handleCancel
}]
});
$('dialogQmName').show();
i2b2.CRC.view.dialogQmName.validate = function(){
// now process the form data
var msgError = '';
var queryNameInput = $('inputQueryName');
if (!queryNameInput || queryNameInput.value.blank()) {
alert('Please enter a name for this query.');
return false;
}
return true;
};
i2b2.CRC.view.dialogQmName.render(document.body);
}
// manage the event handler for submit
delete i2b2.CRC.view.dialogQmName.submitterFunction;
i2b2.CRC.view.dialogQmName.submitterFunction = handleSubmit;
// display the dialoge
i2b2.CRC.view.dialogQmName.center();
i2b2.CRC.view.dialogQmName.show();
}
// ================================================================================================== //
this._getQueryXML = function(queryName) {
var i;
var isTemporal = false;
var el;
var concept;
var panel_list = i2b2.CRC.model.queryCurrent.panels[0]; //i2b2.CRC.ctrlr.QT.temporalGroup];
var panel_cnt = panel_list.length;
var auto_query_name_len = 15;
var auto_query_name = '';
if (this.queryTiming == "TEMPORAL") {
isTemporal = true;
}
if (panel_cnt > 0) {
auto_query_name_len = Math.floor(15/panel_cnt);
if (auto_query_name_len < 1) {auto_query_name_len = 1;}
}
// build Query XML
var s = '<query_definition>\n';
if (isTemporal)
{
queryName = '(t) ' + queryName;
}
s += '\t<query_name>' + i2b2.h.Escape(queryName) + '</query_name>\n';
if (this.queryTiming == "SAMEVISIT")
{
s += '\t<query_timing>SAMEVISIT</query_timing>\n';
} else if (this.queryTiming == "ANY") {
s += '\t<query_timing>ANY</query_timing>\n';
} else if (this.queryTiming == "TEMPORAL") {
s += '\t<query_timing>ANY</query_timing>\n';
} else {
s += '\t<query_timing>SAMEINSTANCENUM</query_timing>\n';
}
s += '\t<specificity_scale>0</specificity_scale>\n';
if (i2b2.PM.model.shrine_domain) { s += '\t<use_shrine>1</use_shrine>\n'; }
for (var ip = 0; ip < i2b2.CRC.model.queryCurrent.panels.length; ip++)
{
panel_list = i2b2.CRC.model.queryCurrent.panels[ip]; //i2b2.CRC.ctrlr.QT.temporalGroup];
panel_cnt = panel_list.length;
if (isTemporal && ip > 0)
{
//if equal to one than add subquery_contraint
if (ip == 1)
{
for (var tb=0; tb <= this.tenporalBuilders; tb++) {
s += '\t<subquery_constraint>\n';
s += '\t\t<first_query>\n';
s += '\t\t\t<query_id>' + $('instancevent1[' + tb + ']').options[$('instancevent1[' + tb + ']').selectedIndex].value + '</query_id>\n';
s += '\t\t\t<join_column>' + $('preloc1[' + tb + ']').options[$('preloc1[' + tb + ']').selectedIndex].value + '</join_column>\n';
s += '\t\t\t<aggregate_operator>' + $('instanceopf1[' + tb + ']').options[$('instanceopf1[' + tb + ']').selectedIndex].value + '</aggregate_operator>\n';
s += '\t\t</first_query>\n';
s += '\t\t<operator>' + $('postloc[' + tb + ']').options[$('postloc[' + tb + ']').selectedIndex].value + '</operator>\n';
s += '\t\t<second_query>\n';
s += '\t\t\t<query_id>' + $('instancevent2[' + tb + ']').options[$('instancevent2[' + tb + ']').selectedIndex].value + '</query_id>\n';
s += '\t\t\t<join_column>' + $('preloc2[' + tb + ']').options[$('preloc2[' + tb + ']').selectedIndex].value + '</join_column>\n';
s += '\t\t\t<aggregate_operator>' + $('instanceopf2[' + tb + ']').options[$('instanceopf2[' + tb + ']').selectedIndex].value + '</aggregate_operator>\n';
s += '\t\t</second_query>\n';
if ( $('bytime1[' + tb + ']').checked)
{
s += '\t\t<span>\n';
s += '\t\t\t<operator>' + $('byspan1[' + tb + ']').options[$('byspan1[' + tb + ']').selectedIndex].value + '</operator>\n';
s += '\t\t\t<span_value>' + $('bytimevalue1[' + tb + ']').value + '</span_value>\n';
s += '\t\t\t<units>' + $('bytimeunit1[' + tb + ']').options[$('bytimeunit1[' + tb + ']').selectedIndex].value + '</units>\n';
s += '\t\t</span>\n';
}
if ( $('bytime2[' + tb + ']').checked)
{
s += '\t\t<span>\n';
s += '\t\t\t<operator>' + $('byspan2[' + tb + ']').options[$('byspan2[' + tb + ']').selectedIndex].value + '</operator>\n';
s += '\t\t\t<span_value>' + $('bytimevalue2[' + tb + ']').value + '</span_value>\n';
s += '\t\t\t<units>' + $('bytimeunit2[' + tb + ']').options[$('bytimeunit2[' + tb + ']').selectedIndex].value + '</units>\n';
s += '\t\t</span>\n';
}
s += '\t</subquery_constraint>\n';
}
}
if (panel_list[0].items.length == 0)
break;
s += '<subquery>\n ';
s += '<query_id>Event '+ ip +'</query_id>\n';
s += '<query_type>EVENT</query_type>\n';
s += '<query_name>Event '+ ip +'</query_name>\n';
s += '<query_timing>SAMEINSTANCENUM</query_timing>\n';
s += '<specificity_scale>0</specificity_scale>\n';
}
for (var p = 0; p < panel_cnt; p++) {
s += '\t<panel>\n';
s += '\t\t<panel_number>' + (p+1) + '</panel_number>\n';
// date range constraints
if (panel_list[p].dateFrom) {
s += '\t\t<panel_date_from>'+panel_list[p].dateFrom.Year+'-'+padNumber(panel_list[p].dateFrom.Month,2)+'-'+padNumber(panel_list[p].dateFrom.Day,2)+'T00:00:00.000-05:00</panel_date_from>\n';
}
if (panel_list[p].dateTo) {
s += '\t\t<panel_date_to>'+panel_list[p].dateTo.Year+'-'+padNumber(panel_list[p].dateTo.Month,2)+'-'+padNumber(panel_list[p].dateTo.Day,2)+'T00:00:00.000-05:00</panel_date_to>\n';
}
s += "\t\t<panel_accuracy_scale>" + panel_list[p].relevance + "</panel_accuracy_scale>\n";
// Exclude constraint (invert flag)
if (panel_list[p].exclude) {
s += '\t\t<invert>1</invert>\n';
} else {
s += '\t\t<invert>0</invert>\n';
}
// Panel Timing
s += '\t\t<panel_timing>' + panel_list[p].timing + '</panel_timing>\n';
// Occurs constraint
s += '\t\t<total_item_occurrences>'+((panel_list[p].occurs*1)+1)+'</total_item_occurrences>\n';
// Concepts
for (i=0; i < panel_list[p].items.length; i++) {
var sdxData = panel_list[p].items[i];
s += '\t\t<item>\n';
switch(sdxData.sdxInfo.sdxType) {
case "QM":
s += '\t\t\t<item_key>masterid:' + sdxData.origData.id + '</item_key>\n';
s += '\t\t\t<item_name>' + sdxData.origData.title + '</item_name>\n';
s += '\t\t\t<tooltip>' + sdxData.origData.name + '</tooltip>\n';
s += '\t\t\t<item_is_synonym>false</item_is_synonym>\n';
s += '\t\t\t<hlevel>0</hlevel>\n';
break;
case "PRS":
s += '\t\t\t<item_key>patient_set_coll_id:' + sdxData.sdxInfo.sdxKeyValue + '</item_key>\n';
s += '\t\t\t<item_name>' + sdxData.sdxInfo.sdxDisplayName + '</item_name>\n';
s += '\t\t\t<tooltip>' + sdxData.sdxInfo.sdxDisplayName + '</tooltip>\n';
s += '\t\t\t<item_is_synonym>false</item_is_synonym>\n';
s += '\t\t\t<hlevel>0</hlevel>\n';
break;
case "ENS":
s += '\t\t\t<item_key>patient_set_enc_id:' + sdxData.sdxInfo.sdxKeyValue + '</item_key>\n';
s += '\t\t\t<item_name>' + sdxData.sdxInfo.sdxDisplayName + '</item_name>\n';
s += '\t\t\t<tooltip>' + sdxData.sdxInfo.sdxDisplayName + '</tooltip>\n';
s += '\t\t\t<item_is_synonym>false</item_is_synonym>\n';
s += '\t\t\t<hlevel>0</hlevel>\n';
break;
default:
if (sdxData.origData.isModifier) {
var modParent = sdxData.origData.parent;
var level = sdxData.origData.level;
var key = sdxData.origData.parent.key;
var name = (sdxData.origData.parent.name != null ? i2b2.h.Escape(sdxData.origData.parent.name) : i2b2.h.Escape(sdxData.origData.name)) ;
var tooltip = sdxData.origData.tooltip;
var itemicon = sdxData.origData.hasChildren;
while (modParent != null)
{
if (modParent.isModifier)
{
modParent = modParent.parent;
} else {
level = modParent.level;
key = modParent.key;
name = modParent.name;
tooltip = modParent.tooltip;
itemicon = modParent.hasChildren;
break;
}
}
s += '\t\t\t<hlevel>' + level + '</hlevel>\n';
s += '\t\t\t<item_key>' + key + '</item_key>\n';
s += '\t\t\t<item_name>' + name + '</item_name>\n';
// (sdxData.origData.newName != null ? sdxData.origData.newName : sdxData.origData.name) + '</item_name>\n';
s += '\t\t\t<tooltip>' + tooltip + '</tooltip>\n';
s += '\t\t\t<item_icon>' + itemicon + '</item_icon>\n';
s += '\t\t\t<class>ENC</class>\n';
s += '\t\t\t\t<constrain_by_modifier>\n';
s += '\t\t\t\t\t<modifier_name>' + sdxData.origData.name + '</modifier_name>\n';
s += '\t\t\t\t\t<applied_path>' + sdxData.origData.applied_path + '</applied_path>\n';
s += '\t\t\t\t\t<modifier_key>' + sdxData.origData.key + '</modifier_key>\n';
if (sdxData.ModValues)
{
s += this.getValues( sdxData.ModValues);
}
s += '\t\t\t\t</constrain_by_modifier>\n';
} else {
sdxData.origData.key = (sdxData.origData.key).replace(/</g,"<");
sdxData.origData.name = (sdxData.origData.name).replace(/</g,"<");
if (undefined != sdxData.origData.tooltip)
sdxData.origData.tooltip = (sdxData.origData.tooltip).replace(/</g,"<");
s += '\t\t\t<hlevel>' + sdxData.origData.level + '</hlevel>\n';
//s += '\t\t\t<item_name>' + (sdxData.origData.newName != null ? i2b2.h.Escape(sdxData.origData.newName) : i2b2.h.Escape(sdxData.origData.name)) + '</item_name>\n';
s += '\t\t\t<item_name>' + (sdxData.origData.name != null ? i2b2.h.Escape(sdxData.origData.name) : i2b2.h.Escape(sdxData.origData.newName)) + '</item_name>\n';
s += '\t\t\t<item_key>' + sdxData.origData.key + '</item_key>\n';
s += '\t\t\t<tooltip>' + sdxData.origData.tooltip + '</tooltip>\n';
s += '\t\t\t<class>ENC</class>\n';
s += '\t\t\t<item_icon>' + sdxData.origData.hasChildren + '</item_icon>\n';
}
try {
var t = i2b2.h.XPath(sdxData.origData.xmlOrig,'descendant::synonym_cd/text()');
t = (t[0].nodeValue=="Y");
} catch(e) {
var t = "false";
}
s += '\t\t\t<item_is_synonym>'+t+'</item_is_synonym>\n';
if (sdxData.LabValues) {
//s += '\t\t\t<constrain_by_value>\n';
s += this.getValues( sdxData.LabValues);
}
break;
}
//TODO add contraint to the item in the future
/*
s += '\t\t\t<constrain_by_date>\n';
if (panel_list[p].dateFrom) {
s += '\t\t\t\t<date_from>'+panel_list[p].dateFrom.Year+'-'+padNumber(panel_list[p].dateFrom.Month,2)+'-'+padNumber(panel_list[p].dateFrom.Day,2)+'Z</date_from>\n';
}
if (panel_list[p].dateTo) {
s += '\t\t\t\t<date_to>'+panel_list[p].dateTo.Year+'-'+padNumber(panel_list[p].dateTo.Month,2)+'-'+padNumber(panel_list[p].dateTo.Day,2)+'Z</date_to>\n';
}
s += '\t\t\t</constrain_by_date>\n';
*/
s += '\t\t</item>\n';
if (i==0) {
if (undefined != sdxData.origData.name) {
auto_query_name += sdxData.origData.name.substring(0,auto_query_name_len);
} else if (undefined != sdxData.origData.title) {
auto_query_name += sdxData.origData.title.substring(0,auto_query_name_len);
} else {
auto_query_name += "new query";
}
if (p < panel_cnt-1) {auto_query_name += '-';}
}
}
s += '\t</panel>\n';
}
if (isTemporal && ip > 0)
{
s += '</subquery>\n ';
}
if (isTemporal == false)
{
break;
}
}
s += '</query_definition>\n';
this.queryMsg = {};
this.queryMsg.queryAutoName = auto_query_name;
if (undefined===queryName) {
this.queryMsg.queryName = this.queryNameDefault;
} else {
this.queryMsg.queryName = queryName;
}
this.queryMsg.queryXML = s;
return(this.queryMsg);
}
this.getValues = function(lvd) {
var s = '\t\t\t<constrain_by_value>\n';
//var lvd = sdxData.LabValues;
switch(lvd.MatchBy) {
case "FLAG":
s += '\t\t\t\t<value_type>FLAG</value_type>\n';
s += '\t\t\t\t<value_operator>EQ</value_operator>\n';
s += '\t\t\t\t<value_constraint>'+i2b2.h.Escape(lvd.ValueFlag)+'</value_constraint>\n';
break;
case "VALUE":
if (lvd.GeneralValueType=="ENUM") {
var sEnum = [];
for (var i2=0;i2<lvd.ValueEnum.length;i2++) {
sEnum.push(i2b2.h.Escape(lvd.ValueEnum[i2]));
}
//sEnum = sEnum.join("\", \"");
sEnum = sEnum.join("\',\'");
sEnum = '(\''+sEnum+'\')';
s += '\t\t\t\t<value_type>TEXT</value_type>\n';
s += '\t\t\t\t<value_constraint>'+sEnum+'</value_constraint>\n';
s += '\t\t\t\t<value_operator>IN</value_operator>\n';
} else if (lvd.GeneralValueType=="STRING") {
s += '\t\t\t\t<value_type>TEXT</value_type>\n';
s += '\t\t\t\t<value_operator>'+lvd.StringOp+'</value_operator>\n';
s += '\t\t\t\t<value_constraint><![CDATA['+i2b2.h.Escape(lvd.ValueString)+']]></value_constraint>\n';
} else if (lvd.GeneralValueType=="LARGESTRING") {
if (lvd.DbOp) {
s += '\t\t\t\t<value_operator>CONTAINS[database]</value_operator>\n';
} else {
s += '\t\t\t\t<value_operator>CONTAINS</value_operator>\n';
}
s += '\t\t\t\t<value_type>LARGETEXT</value_type>\n';
s += '\t\t\t\t<value_constraint><![CDATA['+lvd.ValueString+']]></value_constraint>\n';
} else {
s += '\t\t\t\t<value_type>'+lvd.GeneralValueType+'</value_type>\n';
s += '\t\t\t\t<value_unit_of_measure>'+lvd.UnitsCtrl+'</value_unit_of_measure>\n';
s += '\t\t\t\t<value_operator>'+lvd.NumericOp+'</value_operator>\n';
if (lvd.NumericOp == 'BETWEEN') {
s += '\t\t\t\t<value_constraint>'+i2b2.h.Escape(lvd.ValueLow)+' and '+i2b2.h.Escape(lvd.ValueHigh)+'</value_constraint>\n';
} else {
s += '\t\t\t\t<value_constraint>'+i2b2.h.Escape(lvd.Value)+'</value_constraint>\n';
}
}
break;
case "":
break;
}
s += '\t\t\t</constrain_by_value>\n';
return s;
}
// ================================================================================================== //
this.panelAdd = function(yuiTree) {
// this function is used to create a new panel, it initializes the data structure in the
if (!i2b2.CRC.model.queryCurrent.panels) {
i2b2.CRC.model.queryCurrent.panels = [];
i2b2.CRC.model.queryCurrent.panels[0] = new Array();
i2b2.CRC.model.queryCurrent.panels[1] = new Array();
i2b2.CRC.model.queryCurrent.panels[2] = new Array();
// i2b2.CRC.model.queryCurrent.panels = new Array(new Array());
}
var dm = i2b2.CRC.model.queryCurrent;
var pi = dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length;
if (pi == undefined)
{
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup] = new Array();
pi = 0;
}
var tTiming = i2b2.CRC.ctrlr.QT.queryTiming;
if ((tTiming == "TEMPORAL") && (i2b2.CRC.ctrlr.QT.temporalGroup > 0))
tTiming = "SAMEINSTANCENUM";
if ((tTiming == "TEMPORAL") && (i2b2.CRC.ctrlr.QT.temporalGroup == 0))
tTiming = "ANY";
// setup the data model for this panel
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi] = {};
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].dateTo = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].dateFrom = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].exclude = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].occurs = '0';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].relevance = '100';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].timing = tTiming; // i2b2.CRC.ctrlr.QT.queryTiming; //'ANY';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].items = [];
// create a treeview root node and connect it to the treeview controller
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode = new YAHOO.widget.RootNode(this.yuiTree);
yuiTree.root = dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode.tree = yuiTree;
yuiTree.setDynamicLoad(i2b2.CRC.ctrlr.QT._loadTreeDataForNode,1);
if (dm.panels.length == 1)
{
var tTiming = i2b2.CRC.ctrlr.QT.queryTiming;
if (i2b2.CRC.ctrlr.QT.queryTiming == "TEMPORAL")
tTiming = "ANY";
i2b2.CRC.ctrlr.QT.temporalGroup = 1;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup] = {};
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi] = {};
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].dateTo = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].dateFrom = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].exclude = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].occurs = '0';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].relevance = '100';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].timing = tTiming; //i2b2.CRC.ctrlr.QT.queryTiming; //'ANY';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].items = [];
// create a treeview root node and connect it to the treeview controller
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode = new YAHOO.widget.RootNode(this.yuiTree);
yuiTree.root = dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode.tree = yuiTree;
yuiTree.setDynamicLoad(i2b2.CRC.ctrlr.QT._loadTreeDataForNode,1);
i2b2.CRC.ctrlr.QT.temporalGroup = 2;
if (i2b2.CRC.ctrlr.QT.queryTiming == "TEMPORAL")
tTiming = "SAMEINSTANCENUM";
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup] = {};
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi] = {};
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].dateTo = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].dateFrom = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].exclude = false;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].occurs = '0';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].relevance = '100';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].timing = tTiming; //i2b2.CRC.ctrlr.QT.queryTiming; //'ANY';
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].items = [];
// create a treeview root node and connect it to the treeview controller
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode = new YAHOO.widget.RootNode(this.yuiTree);
yuiTree.root = dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode;
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi].tvRootNode.tree = yuiTree;
yuiTree.setDynamicLoad(i2b2.CRC.ctrlr.QT._loadTreeDataForNode,1);
i2b2.CRC.ctrlr.QT.temporalGroup = 0;
}
// update the count on the GUI
this._redrawPanelCount();
// return a reference to the new panel object
this.doSetQueryName.call(this,'');
return dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup][pi];
}
// ================================================================================================== //
this._loadTreeDataForNode = function(node, onCompleteCallback) {
i2b2.sdx.Master.LoadChildrenFromTreeview(node, onCompleteCallback);
}
// ================================================================================================== //
this.ToggleNode = function(divTarg, divTreeID) {
// get the i2b2 data from the yuiTree node
var tvTree = YAHOO.widget.TreeView.findTreeByChildDiv(divTarg); // this is a custom extention found in "hive_helpers.js"
var tvNode = tvTree.getNodeByProperty('nodeid', divTarg.id);
tvNode.toggle();
}
// ================================================================================================== //
this.panelDelete = function(index) {
// alter the data model's panel elements
var dm = i2b2.CRC.model.queryCurrent;
if(index <0 || index>=dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length) { return false;}
dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup].splice(index,1);
// redraw the panels
this.doShowFrom(this.panelControllers[0].panelCurrentIndex);
// BUG FIX: force the panels to fully reattach the yuiRootNode to the controllers
for (var i=0; i<this.panelControllers.length; i++) {
this.panelControllers[i].doRedraw();
}
this._redrawPanelCount();
this.doSetQueryName.call(this,'');
}
// ================================================================================================== //
this.doShowFrom = function(index_offset) {
// have all panel controllers redraw using new index offest
$('infoQueryStatusText').innerHTML = "";
if (index_offset===false) { return true; }
if (index_offset < 0) { index_offset = 0; }
for (var i=0; i<3; i++) {
if ((i2b2.CRC.ctrlr.QT.queryTiming == "TEMPORAL") && (i==0))
{
var sText = defineTemporalButton.get("label");
if (sText != "Population in which events occur")
this.panelControllers[i].refTitle.innerHTML = 'Anchoring Observation';
else
this.panelControllers[i].refTitle.innerHTML = 'Group 1';
}
else
{
this.panelControllers[i].refTitle.innerHTML = "Group "+(index_offset+i+1);
}
this.panelControllers[i].setPanelRecord(index_offset+i, i);
if (i > 0) {
if (index_offset+i <= i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length) {
$('queryBalloonAnd'+(i)).style.display = 'block';
} else {
$('queryBalloonAnd'+(i)).style.display = 'none';
}
}
}
this._redrawScrollBtns();
}
// ================================================================================================== //
this._redrawAllPanels = function() {
$('infoQueryStatusText').innerHTML = "";
for (var i=0; i<3; i++) {
this.panelControllers[i].doRedraw();
if (i > 0) {//@pcori panel fix. for panels[i2b2.CRC.ctrlr.QT.temporalGroup]
if (this.panelControllers[i].panelCurrentIndex-1 < i2b2.CRC.model.queryCurrent.panels.length) {
$('queryBalloonAnd'+(i)).style.display = 'block';
} else {
$('queryBalloonAnd'+(i)).style.display = 'none';
}
}
}
}
// ================================================================================================== //
this._redrawPanelCount = function() {
var c = i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length;
if (c == 1) {
var s = '1 Group';
} else {
var s = c + ' Groups';
}
$('groupCount').innerHTML = s;
}
// ================================================================================================== //
this.laodQueryStatus = function( queryMasterId, queryName) {
var QRS = {};
var newHTML = "";
var qi_id = "";
$('infoQueryStatusText').innerHTML = "";
var scopedCallbackQI = new i2b2_scopedCallback();
scopedCallbackQI.scope = this;
scopedCallbackQI.callback = function(results) {
if (results.error) {
alert(results.errorMsg);
return;
} else {
// find our query instance
var qi_list = results.refXML.getElementsByTagName('query_instance');
var l = qi_list.length;
for (var i=0; i<l; i++) {
var temp = qi_list[i];
qi_id = i2b2.h.XPath(temp, 'descendant-or-self::query_instance_id')[0].firstChild.nodeValue;
var start_date = i2b2.h.XPath(temp, 'descendant-or-self::start_date')[0].firstChild.nodeValue;
if (!Object.isUndefined(start_date)) {
//alert(sDate.substring(0,4) + ":" + sDate.substring(5,7) + ":" + sDate.substring(8,10));
//012345678901234567890123
//2010-12-21T16:12:01.427
start_date = new Date(start_date.substring(0,4), start_date.substring(5,7)-1, start_date.substring(8,10), start_date.substring(11,13), start_date.substring(14,16),start_date.substring(17,19),start_date.substring(20,23));
}
var end_date = i2b2.h.XPath(temp, 'descendant-or-self::end_date')[0].firstChild.nodeValue;
if (!Object.isUndefined(end_date)) {
//alert(sDate.substring(0,4) + ":" + sDate.substring(5,7) + ":" + sDate.substring(8,10));
end_date = new Date(end_date.substring(0,4), end_date.substring(5,7)-1, end_date.substring(8,10), end_date.substring(11,13),end_date.substring(14,16), end_date.substring(17,19), end_date.substring(20,23));
}
$('infoQueryStatusText').innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Finished Query: "'+queryName+'"</div>';
$('infoQueryStatusText').innerHTML += '<div style="float:right">['+ (Math.floor((end_date - start_date)/100))/10 +' secs]</div></div>';
// $('infoQueryStatusText').innerHTML += '<div style="clear:both;"><div style="float:left; font-weight:bold">Finished Query: "'+queryName+'"</div><div style="margin-left:20px; clear:both; height:16px; line-height:16px; "><div height:16px; line-height:16px; ">Compute Time: ' + (Math.floor((end_date - start_date)/100))/10 + ' secs</div></div>';
i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryInstanceId("CRC:QueryTool", {qi_key_value: qi_id}, scopedCallbackQRS);
}
}
}
// this is a private function that is used by all QueryStatus object instances to check their status
// callback processor to check the Query Instance
var scopedCallbackQRSI = new i2b2_scopedCallback();
scopedCallbackQRSI.scope = this;
scopedCallbackQRSI.callback = function(results) {
if (results.error) {
alert(results.errorMsg);
return;
} else {
// find our query instance
var ri_list = results.refXML.getElementsByTagName('query_result_instance');
var l = ri_list.length;
for (var i=0; i<l; i++) {
var temp = ri_list[i];
var description = i2b2.h.XPath(temp, 'descendant-or-self::description')[0].firstChild.nodeValue;
$('infoQueryStatusText').innerHTML += "<div style=\"clear: both; padding-top: 10px; font-weight: bold;\">" + description + "</div>";
}
var crc_xml = results.refXML.getElementsByTagName('crc_xml_result');
l = crc_xml.length;
for (var i=0; i<l; i++) {
var temp = crc_xml[i];
var xml_value = i2b2.h.XPath(temp, 'descendant-or-self::xml_value')[0].firstChild.nodeValue;
var xml_v = i2b2.h.parseXml(xml_value);
i2b2.PM.model.userRoles.indexOf("DATA_LDS") == -1
// var proj_data = i2b2.PM.view.admin.currentProject;
var params = i2b2.h.XPath(xml_v, 'descendant::data[@column]/text()/..');
for (var i2 = 0; i2 < params.length; i2++) {
var name = params[i2].getAttribute("name");
// $('infoQueryStatusText').innerHTML += "<div style=\"margin-left: 20px; clear: both; height: 16px; line-height: 16px;\">";
$('infoQueryStatusText').innerHTML += "<div style=\"clear: both; margin-left: 20px; float: left; height: 16px; line-height: 16px;\">" + params[i2].getAttribute("column") + ": <font color=\"#0000dd\">" + params[i2].firstChild.nodeValue + "" + (i2b2.PM.model.userRoles.indexOf("DATA_LDS") == -1 ? "±3" : "") + "</font></div>";
//$('infoQueryStatusText').innerHTML += "</div>"; //i2b2.h.XPath(newxml, 'descendant-or-self::result/data')[0].firstChild.nodeValue;
}
var ri_id = i2b2.h.XPath(temp, 'descendant-or-self::result_instance_id')[0].firstChild.nodeValue;
}
}
}
// callback processor to check the Query Result Set
var scopedCallbackQRS = new i2b2_scopedCallback();
scopedCallbackQRS.scope = this;
scopedCallbackQRS.callback = function(results) {
if (results.error) {
alert(results.errorMsg);
return;
} else {
// find our query instance
var qrs_list = results.refXML.getElementsByTagName('query_result_instance');
var l = qrs_list.length;
var resultStr = "";
for (var i=0; i<l; i++) {
var temp = qrs_list[i];
var qrs_id = i2b2.h.XPath(temp, 'descendant-or-self::result_instance_id')[0].firstChild.nodeValue;
if (QRS.hasOwnProperty(qrs_id)) {
var rec = QRS[qrs_id];
} else {
var rec = new Object();
rec.QRS_ID = qrs_id;
// resultStr += i2b2.h.getXNodeVal(temp, 'description');
// resultStr += i2b2.h.XPath(temp, 'descendant-or-self::query_status_type/name')[0].firstChild.nodeValue;
// resultStr += "<br/>";
rec.QRS_DisplayType = i2b2.h.XPath(temp, 'descendant-or-self::query_result_type/display_type')[0].firstChild.nodeValue;
rec.QRS_Type = i2b2.h.XPath(temp, 'descendant-or-self::query_result_type/name')[0].firstChild.nodeValue;
rec.QRS_Description = i2b2.h.XPath(temp, 'descendant-or-self::description')[0].firstChild.nodeValue;
rec.QRS_TypeID = i2b2.h.XPath(temp, 'descendant-or-self::query_result_type/result_type_id')[0].firstChild.nodeValue;
}
rec.QRS_Status = i2b2.h.XPath(temp, 'descendant-or-self::query_status_type/name')[0].firstChild.nodeValue;
rec.QRS_Status_ID = i2b2.h.XPath(temp, 'descendant-or-self::query_status_type/status_type_id')[0].firstChild.nodeValue;
// create execution time string
QRS[rec.QRS_ID] = rec;
if (rec.QRS_DisplayType == "CATNUM") {
i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryResultInstanceId("CRC:QueryTool", {qr_key_value: rec.QRS_ID}, scopedCallbackQRSI);
} else if (rec.QRS_DisplayType == "LIST") {
$('infoQueryStatusText').innerHTML += "<div style=\"clear: both; padding-top: 10px; font-weight: bold;\">" + rec.QRS_Description + "</div>";
}
}
// $('infoQueryStatusText').innerHTML = resultStr;
}
}
//first get instance id
i2b2.CRC.ajax.getQueryInstanceList_fromQueryMasterId("CRC:QueryTool", {qm_key_value: queryMasterId}, scopedCallbackQI);
//if (qi_id != "") {
// i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryInstanceId("CRC:QueryTool", {qi_key_value: qi_id}, scopedCallbackQRS);
// for (var q in QRS) {
// i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryResultInstanceId("CRC:QueryTool", {qr_key_value: QRS[q].QRS_ID}, scopedCallbackQRSI);
// }
//}
}
// ================================================================================================== //
this.doAddTemporal = function() {
var html = $('temporalbuilders').innerHTML;
this.tenporalBuilders = this.tenporalBuilders + 1;
html = $('temporalbuilders').innerHTML
+ ' <div class="relationshipAmongEvents" id="temporalbuilder_' + this.tenporalBuilders + '"> '
+ ' <select id="preloc1[' + this.tenporalBuilders + ']" name="preloc1[' + this.tenporalBuilders + ']" style="width:100px;"><option value="STARTDATE">Start of</option><option value="ENDDATE">End of</option></select> '
+ ' <select id="instanceopf1[' + this.tenporalBuilders + ']" name="instanceopf1[' + this.tenporalBuilders + ']" style="width:150px;"><option value="FIRST">the First Ever</option><option value="LAST">the Last Ever</option><option value="ANY">any</option></select> '
+ ' <select id="instancevent1[' + this.tenporalBuilders + ']" name="instancevent1[' + this.tenporalBuilders + ']" style="width:100px;"><option selected="selected">Event 1</option><option>Event 2</option>';
for (var j =3; j < i2b2.CRC.model.queryCurrent.panels.length; j ++)
{
html += '<option>Event ' + j + '</option>';
}
html += ' </select> <br/> '
+ ' <select id="postloc[' + this.tenporalBuilders + ']" name="postloc[' + this.tenporalBuilders + ']" style="width:150px;"><option value="LESS">Occurs Before</option><option value="LESSEQUAL">On Or After</option> '
+ ' <option value="EQUAL">Equals</option> '
+ ' <option value="GREATER">Occurs On Or After</option> '
+ ' <option value="GREATEREQUAL">Occurs After</option> '
+ ' </select> '
+ ' <br/> '
+ ' <select id="preloc2[' + this.tenporalBuilders + ']" name="preloc2[' + this.tenporalBuilders + ']" style="width:100px;"><option value="STARTDATE">Start of</option><option value="ENDDATE">End of</option></select> '
+ ' <select id="instanceopf2[' + this.tenporalBuilders + ']" name="instanceopf2[' + this.tenporalBuilders + ']" style="width:150px;"><option value="FIRST">the First Ever</option><option value="LAST">the Last Ever</option><option value="ANY">any</option></select> '
+ ' <select id="instancevent2[' + this.tenporalBuilders + ']" name="instancevent2[' + this.tenporalBuilders + ']" style="width:100px;"><option>Event 1</option><option selected="selected">Event 2</option>';
for (var j =3; j < i2b2.CRC.model.queryCurrent.panels.length; j ++)
{
html += '<option>Event ' + j + '</option>';
}
html += ' </select> <br/> '
+ ' <input id="bytime1[' + this.tenporalBuilders + ']" name="bytime1[' + this.tenporalBuilders + ']" type="checkbox">By <select id="byspan1[' + this.tenporalBuilders + ']" name="byspan1[' + this.tenporalBuilders + ']" style="width:50px;"><option value="GREATER">></option><option value="GREATEREQUAL" selected="selected">≥</option><option value="EQUAL">=</option><option value="LESSEQUAL">≤</option><option value="LESS"><</option></select> '
+ ' <input id="bytimevalue1[' + this.tenporalBuilders + ']" name="bytimevalue1[' + this.tenporalBuilders + ']" style="width:50px;" type="text" value="1"> '
+ ' <select id="bytimeunit1[' + this.tenporalBuilders + ']" name="bytimeunit1[' + this.tenporalBuilders + ']" style="width:100px;"> '
+ ' <option value="HOUR">hour(s)</option> '
+ ' <option value="DAY" selected="selected">day(s)</option> '
+ ' <option value="MONTH">month(s)</option> '
+ ' <option value="YEAR">year(s)</option></select> '
+ ' <br/> '
+ ' <input id="bytime2[' + this.tenporalBuilders + ']" name="bytime2[' + this.tenporalBuilders + ']" type="checkbox">And <select id="byspan2[' + this.tenporalBuilders + ']" name="byspan2[' + this.tenporalBuilders + ']" style="width:50px;"><option value="GREATER">></option><option value="GREATEREQUAL">≥</option><option value="EQUAL">=</option><option value="LESSEQUAL" selected="selected">≤</option><option value="LESS"><</option></select> '
+ ' <input id="bytimevalue2[' + this.tenporalBuilders + ']" name="bytimevalue2[' + this.tenporalBuilders + ']" style="width:50px;" type="text" value="1"> '
+ ' <select id="bytimeunit2[' + this.tenporalBuilders + ']" name="bytimeunit2[' + this.tenporalBuilders + ']" style="width:100px;"> '
+ ' <option value="HOUR">hour(s)</option> '
+ ' <option value="DAY" selected="selected">day(s)</option> '
+ ' <option value="MONTH">month(s)</option> '
+ ' <option value="YEAR">year(s)</option></select> '
+ ' </div> ';
'<div class="relationshipAmongEvents" id="temporalbuilder_' + this.tenporalBuilders + '">' + html + '</div>';
$('temporalbuilders').innerHTML = html;
}
// ================================================================================================== //
this.doRemoveTemporal = function() { // nw096 - WEBCLIENT-155 Removes last temporal relationship
if(this.tenporalBuilders == 0){
alert('You must leave a minimum of one temporal relationship.');
} else {
if(jQuery("[id^='temporalbuilder_']").length > 1){
this.tenporalBuilders = this.tenporalBuilders - 1;
$('temporalbuilders').lastChild.remove();
}
}
}
// ================================================================================================== //
this.doScrollFirst = function() {
this.doShowFrom(0);
}
// ================================================================================================== //
this.doScrollPrev = function() {
var i = this.panelControllers[0].panelCurrentIndex - 1;
if (i<0) { i=0; }
this.doShowFrom(i);
}
// ================================================================================================== //
this.doScrollNext = function() {
var i = this.panelControllers[0].panelCurrentIndex + 1;
var dm = i2b2.CRC.model.queryCurrent;
if (i > (dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length-3)) { i=dm.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length-3; }
this.doShowFrom(i);
}
// ================================================================================================== //
this.doScrollLast = function() {
var i = i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length - 3;
if (i<0) { i = 0; }
this.doShowFrom(i);
}
// ================================================================================================== //
this.doScrollNew = function() {
var i = i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length - 2;
if (i<0) { i = 0; }
this.doShowFrom(i);
}
// ================================================================================================== //
this._redrawScrollBtns = function() {
// enable & disable scroll buttons (at least the look of the buttons)
var dir = i2b2.hive.cfg.urlFramework + 'cells/CRC/assets/';
if (i2b2.CRC.ctrlr.QT.panelControllers[0].panelCurrentIndex == 0) {
$('panelScrollFirst').src = dir+"QryTool_b_first_hide.gif";
$('panelScrollPrev').src = dir+"QryTool_b_prev_hide.gif";
} else {
$('panelScrollFirst').src = dir+"QryTool_b_first.gif";
$('panelScrollPrev').src = dir+"QryTool_b_prev.gif";
}
if ((i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup].length - i2b2.CRC.ctrlr.QT.panelControllers[0].panelCurrentIndex) > 3) {
$('panelScrollNext').src = dir+"QryTool_b_next.gif";
$('panelScrollLast').src = dir+"QryTool_b_last.gif";
} else {
$('panelScrollNext').src = dir+"QryTool_b_next_hide.gif";
$('panelScrollLast').src = dir+"QryTool_b_last_hide.gif";
}
},
// =====================================================================================================//
/***************
* Print Query
****************/
this.doPrintQuery = function() {
var v_i2b2_quey_name = i2b2.CRC.model.queryCurrent.name;
var crc_bcgrnd1 = "<td style='border:1px solid #667788;'>";
var crc_bcgrnd2 = "<td style='border:1px solid #667788;background:#7FFFD4'>";
var crc_cur_bcgrnd = null;
if(
(v_i2b2_quey_name == null) ||
(v_i2b2_quey_name == undefined) ||
(v_i2b2_quey_name.length == 0)
){
v_i2b2_quey_name = 'No Query Name is currently provided.';
}
var v_cnt_panels = i2b2.CRC.model.queryCurrent.panels[0].length;
if(v_cnt_panels > 0){
var win_html_inner =
"<table style='border:1px solid #667788;width:700px;' cellpadding=3px>"+
"<tbody>";
//Get Query Name if available
win_html_inner +=
"<tr>"+
"<td style='background:#6677AA none repeat scroll 0%;border:1px solid #667788;'>"+
"<span style='color:#FFFFFF;font-weight:bold;font-family:arial,helvetica;font-size:13px;'>"+
"Query Name: "+ v_i2b2_quey_name + "<br>Temporal Constraint: ";
var v_querytiming = i2b2.CRC.ctrlr.QT.queryTiming;
if (v_querytiming == "ANY")
{
win_html_inner += "Treat all groups independently";
} else if (v_querytiming == "SAMEVISIT") {
win_html_inner += "Selected groups occur in the same financial encounter";
} else if (v_querytiming == "TEMPORAL") {
win_html_inner += "Define sequence of events";
} else {
win_html_inner += "Items Instance will be the same";
}
win_html_inner += "</span></td></tr>";
var isTemporal = false;
if (this.queryTiming == "TEMPORAL") {
isTemporal = true;
}
for (var ip = 0; ip < i2b2.CRC.model.queryCurrent.panels.length; ip++)
{
var v_cnt_panels = i2b2.CRC.model.queryCurrent.panels[ip].length;
//Get information for each query panel
for(x =0; x < v_cnt_panels; x++){
var v_dateTo = i2b2.CRC.model.queryCurrent.panels[ip][x].dateTo;
var v_dateFrom = i2b2.CRC.model.queryCurrent.panels[ip][x].dateFrom;
var v_exclude = i2b2.CRC.model.queryCurrent.panels[ip][x].exclude;
var v_occurs = i2b2.CRC.model.queryCurrent.panels[ip][x].occurs;
var v_relevance = i2b2.CRC.model.queryCurrent.panels[ip][x].relevance;
var v_timing = i2b2.CRC.model.queryCurrent.panels[ip][x].timing;
var v_items = i2b2.CRC.model.queryCurrent.panels[ip][x].items;
if((x % 2) == 0){
crc_cur_bcgrnd = crc_bcgrnd1;
}
else{
crc_cur_bcgrnd = crc_bcgrnd2;
}
var v_strDateTo = null;
var v_strDateFrom = null;
//Handle JS Dates
if((v_dateTo == null) ||
(v_dateTo == undefined) ||
(v_dateTo == false)
){
v_strDateTo = "none";
}
else{
v_strDateTo =
v_dateTo.Month +"/"+
v_dateTo.Day +"/" +
v_dateTo.Year;
}
//QueryTiming
if (v_querytiming == "ANY")
{
v_timing = "Treat Independently";
} else if (v_querytiming == "SAMEVISIT")
{
if (v_timing == "ANY")
{
v_timing = "Treat Independently";
} else {
v_timing = "Occurs in Same Encounter";
}
} else
{
if (v_timing == "ANY")
{
v_timing = "Treat Independently";
} else {
v_timing = "Items Instance will be the same";
}
}
//Handle JS Dates
if((v_dateFrom == null) ||
(v_dateFrom == undefined) ||
(v_dateFrom == false)
){
v_strDateFrom = "none";
}
else{
v_strDateFrom =
v_dateFrom.Month +"/"+
v_dateFrom.Day +"/" +
v_dateFrom.Year;
}
if (isTemporal)
{
var tempalTitle = "Population in which events occur";
if (ip > 0)
tempalTitle = "Event " + ip;
win_html_inner +=
"<tr>"+
crc_cur_bcgrnd;
win_html_inner +=
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:12px;'>"+
tempalTitle
"</span></td></tr>";
}
win_html_inner +=
"<tr>"+
crc_cur_bcgrnd;
win_html_inner +=
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:12px;'>"+
"Group "+ (x + 1)
"</span></td></tr>";
win_html_inner +=
"<tr><td style='border:1px solid #667788;'>"+
"<table width=100% cellpadding=2px cellspacing=0>"+
"<tbody>"+
"<tr style='border:1px solid #667788;'>"+
"<td colspan=3>"+
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>"+
" Date From: </span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>"+
v_strDateFrom +
"</span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'> </span>"+
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>"+
" Date To: </span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>"+
v_strDateTo +
"</span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'> </span>"+
"<!--Excluded-->"+
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>"+
" Excluded? </span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>"+
v_exclude +
"</span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'> </span>"+
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>"+
" Occurs X times: </span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>> "+
v_occurs +
"</span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'> </span>"+
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>"+
" Relevance %: </span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'> "+
v_relevance +
"</span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'> </span>"+
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>"+
" Temporal Constraint: </span>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>"+
v_timing +
"</span>"+
"</td>"+
"</tr>";
win_html_inner +=
"<!--Header Columns-->"+
"<tr>"+
"<!--Path-->"+
"<td width=40% style='background:#6677AA none repeat scroll 0%;align:center;border-left-style:solid;border-bottom-style:solid;border-top-style:solid;border-right-style:solid;'>"+
"<span style='color:#FFFFFF;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>Path</span>"+
"</td>"+
"<!--Concept-->"+
"<td width=30% style='background:#6677AA none repeat scroll 0%;align:center;border-bottom-style:solid;border-top-style:solid;border-right-style:solid;'>"+
"<span style='color:#FFFFFF;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>Concept/Term</span>"+
"</td>"+
"<!--Other Information-->"+
"<td width=30% style='background:#6677AA none repeat scroll 0%;align:center;border-bottom-style:solid;border-top-style:solid;border-right-style:solid;'>"+
"<span style='color:#FFFFFF;font-weight:bold;font-family:arial,helvetica;font-size:11px;'>Other Information</span>"+
"</td>"+
"</tr>";
win_html_inner +=
"<!--Data Columns-->";
for(n = 0; n < v_items.length; n++){
//str_shrine_path = v_items[n].sdxInfo.sdxKeyValue;
//Using tooltips
str_shrine_path = v_items[n].origData.tooltip;
win_html_inner += "<tr>";
win_html_inner +=
"<td width=40% style='align:center;border-left-style:solid;border-bottom-style:solid;border-right-style:solid;'>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>"+
str_shrine_path +
"</span></td>";
win_html_inner +=
"<td width=30% style='align:center;solid;border-bottom-style:solid;border-right-style:solid;'>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>"+
v_items[n].origData.name +
"</span></td>";
win_html_inner +=
"<td width=30% style='align:center;border-bottom-style:solid;border-right-style:solid;'>"+
"<span style='color:black;font-weight:normal;font-family:arial,helvetica;font-size:11px;'>";
if((v_items[n].LabValues == null) ||
(v_items[n].LabValues == undefined) ||
(v_items[n].LabValues.length <= 0)
){
win_html_inner += " ";
}
else{
var v_lab_values = v_items[n].LabValues;
var str_lab_values = "";
if(v_lab_values.GeneralValueType == "NUMBER") {
str_lab_values =
v_lab_values.NumericOp +" : ";
if((v_lab_values.ValueLow != null) ||
(v_lab_values.ValueLow != undefined)
){
str_lab_values +=
v_lab_values.ValueLow + " - "+
v_lab_values.ValueHigh;
} else {
str_lab_values +=
v_lab_values.Value;
}
str_lab_values += " "+ v_lab_values.UnitsCtrl;
}
//String
else if((v_lab_values.ValueString != null) ||
(v_lab_values.ValueString != undefined)
){
str_lab_values =
"By String: "+
v_lab_values.ValueString;
}
//Flag
else if((v_lab_values.ValueFlag != null) ||
(v_lab_values.ValueFlag != undefined)
){
var v_flag = "Normal";
if(v_lab_values.ValueFlag == "H"){
v_flag = "High";
}
else if(v_lab_values.ValueFlag == "L"){
v_flag = "Low";
}
str_lab_values =
"By Flag: "+ v_flag;
}
win_html_inner += str_lab_values;
}
win_html_inner += "</span></td></tr>";
}
//end
if (isTemporal == false)
break;
}
win_html_inner += "</tbody></table>";
}
if (isTemporal)
{
win_html_inner +=
"<tr>"+
crc_cur_bcgrnd;
win_html_inner +=
"<span style='color:black;font-weight:bold;font-family:arial,helvetica;font-size:12px;'><center>"+
$('instancevent1[0]').options[$('instancevent1[0]').selectedIndex].value + " " +
$('preloc1[0]').options[$('preloc1[0]').selectedIndex].value +" " +
$('instanceopf1[0]').options[$('instanceopf1[0]').selectedIndex].value +"<br/>" +
$('postloc[0]').options[$('postloc[0]').selectedIndex].value + "<br/>" +
$('instancevent2[0]').options[$('instancevent2[0]').selectedIndex].value + " " +
$('preloc2[0]').options[$('preloc2[0]').selectedIndex].value + " " +
$('instanceopf2[0]').options[$('instanceopf2[0]').selectedIndex].value +" ";
if ( $('bytime1[0]').checked)
{
win_html_inner += "<br/>" + $('byspan1[0]').options[$('byspan1[0]').selectedIndex].value + " " +
$('bytimevalue1[0]').value + " " +
$('bytimeunit1[0]').options[$('bytimeunit1[0]').selectedIndex].value +" ";
}
if ( $('bytime2[0]').checked)
{
win_html_inner += "<br/>" + $('byspan2[0]').options[$('byspan2[0]').selectedIndex].value + " " +
$('bytimevalue2[0]').value + " " +
$('bytimeunit2[0]').options[$('bytimeunit2[0]').selectedIndex].value;
}
win_html_inner += "</center></span></td></tr>";
}
win_html_inner += "</tbody></table>";
//Query Status window
var self = i2b2.CRC.ctrlr.currentQueryStatus;
if(
(self != null) &&
(self != undefined) &&
(self.dispDIV != null) &&
(self.dispDIV != undefined)
){
win_html_inner += self.dispDIV.innerHTML;
}
var win =
window.open("",'shrinePrintWindow','width=800,height=750,menubar=yes,resizable=yes,scrollbars=yes');
win.document.writeln('<div id="shrinePrintQueryPage">');
win.document.writeln(win_html_inner);
win.document.writeln('</div>');
}
else{
alert("Currently no query is available for printing. \nPlease generate a query before clicking on [Print Query] button.");
}
},
// =====================================================================================================//
/**********************
* Query Report BG
**********************/
// Print Query variables
this.queryPanelObjForPrinting = {};
this.QI_Rec_ForPrinting = new Object();
this.QueryResultsForPrinting = {};
this.QueryResultsForPrintingIndex = 0;
this.QueryResultsNum = 0;
this.query_user_id=null;
this.XMLResultsStringForPrint = "";
var uniqueItems = $H();
var queryReportWin = null;
// End Print Query variables
this.ClearVariablesForPrinting = function()
{
this.queryPanelObjForPrinting = {};
this.QI_Rec_ForPrinting = new Object();
this.QueryResultsForPrinting = {};
this.QueryResultsForPrintingIndex = 0;
this.QueryResultsNum = 0;
this.query_user_id=null;
this.XMLResultsStringForPrint = "";
var uniqueItems = $H();
queryReportWin = null;
};
this.createQueryReport = function(queryNameInput,previewQueryOnly)
{
//This request is to populate the query report panel in the query results section
//If the status box is empty no need to proceed
if($('infoQueryStatusText').innerHTML=="") return;
//Clean the corresponding div before repopulating
$("infoQueryStatusReport").innerHTML="";
//Clean and populate the variables for printing
this.ClearVariablesForPrinting();
if(queryNameInput.length>0 || previewQueryOnly)
this.queryPanelObjForPrinting.name = queryNameInput;
else{
var nameObj = document.getElementById("queryName");
var v_i2b2_quey_name = i2b2.CRC.model.queryCurrent.name;
if(nameObj){
this.queryPanelObjForPrinting.name = nameObj.innerHTML;
}
}
var userIdElm = $("userIdElem");
if(userIdElm)
this.query_user_id = userIdElm.value;
var v_cnt_panels = i2b2.CRC.model.queryCurrent.panels[0].length;
if(v_cnt_panels > 0){
this.queryPanelObjForPrinting.timing = i2b2.CRC.ctrlr.QT.queryTiming;
var isTemporal = false;
if (this.queryTiming == "TEMPORAL") {
isTemporal = true;
}
this.queryPanelObjForPrinting.subQryRelationStructure = [];
this.queryPanelObjForPrinting.mainQryStructure = [];
this.queryPanelObjForPrinting.subQryStructure = [];
this.queryPanelObjForPrinting.hasSubquery = false;
for (var ip = 0; ip < i2b2.CRC.model.queryCurrent.panels.length; ip++)
{
var v_cnt_panels = i2b2.CRC.model.queryCurrent.panels[ip].length;
//Get information for each query panel
var panels = [];
for(x =0; x < v_cnt_panels; x++){
var po = {};
po.dateTo = i2b2.CRC.model.queryCurrent.panels[ip][x].dateTo;
po.dateFrom = i2b2.CRC.model.queryCurrent.panels[ip][x].dateFrom;
po.exclude = i2b2.CRC.model.queryCurrent.panels[ip][x].exclude;
po.occurs = i2b2.CRC.model.queryCurrent.panels[ip][x].occurs;
po.relevance = i2b2.CRC.model.queryCurrent.panels[ip][x].relevance;
po.timing = i2b2.CRC.model.queryCurrent.panels[ip][x].timing;
po.subquery = false;
if (isTemporal && ip>0){
po.name = "Event" + ip;
po.subquery = true;
}
var v_items = i2b2.CRC.model.queryCurrent.panels[ip][x].items;
var v_strDateTo = null;
var v_strDateFrom = null;
//Handle JS Dates
if((po.dateTo == null) ||
(po.dateTo == undefined) ||
(po.dateTo == false)
){
v_strDateTo = "none";
}
else{
v_strDateTo =
po.dateTo.Month +"/"+
po.dateTo.Day +"/" +
po.dateTo.Year;
}
po.dateTo = v_strDateTo
//Handle JS Dates
if((po.dateFrom == null) ||
(po.dateFrom == undefined) ||
(po.dateFrom == false)
){
po.strDateFrom = "none";
}
else{
v_strDateFrom =
po.dateFrom.Month +"/"+
po.dateFrom.Day +"/" +
po.dateFrom.Year;
}
po.dateFrom = v_strDateFrom;
po.items = [];
for(n = 0; n < v_items.length; n++){
var itemObj = {};
itemObj.tooltip = v_items[n].origData.tooltip? v_items[n].origData.tooltip:"";
itemObj.name = v_items[n].origData.result_instance_id ?
(v_items[n].origData.title ? v_items[n].origData.title :
(v_items[n].origData.titleCRC ? v_items[n].origData.titleCRC : ""))
:(v_items[n].origData.newName ? v_items[n].origData.newName
: (v_items[n].origData.name?v_items[n].origData.name:""));
itemObj.hasChildren = v_items[n].origData.hasChildren;
po.items.push(itemObj);
//itemObj.level =
}
panels[x] = po;
}
if(panels.length>0){
if (isTemporal)
{
if (ip > 0)
this.queryPanelObjForPrinting.subQryStructure.push(panels);
else
this.queryPanelObjForPrinting.mainQryStructure.push(panels);
}
else
this.queryPanelObjForPrinting.mainQryStructure.push(panels);
}
}
if(isTemporal)
{
var evntRelDiv = document.getElementById('temporalbuilders');
if(evntRelDiv)
{
var relationNodes = evntRelDiv.childNodes;
this.queryPanelObjForPrinting.subQryRelationStructure = [];
var subQryRelationStructureIndex = 0;
for(i=0; i < relationNodes.length; i++)
{
var thisRelNode = relationNodes[i];
var rel = {};
rel.spans = [];
var spanIndex = 0;
var spanObj = {};
var bytime1 = false;
var bytime2 = false;
var allChildren = thisRelNode.childNodes;
for(j=0; j < allChildren.length; j++)
{
var currentNode = allChildren[j];
if(currentNode.id){
if(currentNode.id.indexOf("preloc1") >= 0)
{
rel.firstQryJoinCol = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf("instanceopf1") >= 0)
{
rel.firstQryOp = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf("instancevent1") >= 0)
{
rel.firstQryEvntNm = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf("postloc") >= 0)
{
rel.operator = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf("preloc2") >= 0)
{
rel.secondQryJoinCol = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf("instanceopf2") >= 0)
{
rel.secondQryOp = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf("instancevent2") >= 0)
{
rel.secondQryEvntNm = getSelectedValueFromOptions(currentNode.options);
}
if((currentNode.id.indexOf('bytime1') >= 0) && currentNode.checked)
{
bytime1 = true;
}
if(currentNode.id.indexOf('byspan1') >= 0 && bytime1)
{
spanObj.oprator = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf('bytimevalue1') >= 0 && bytime1)
{
spanObj.value = currentNode.value;
}
if(currentNode.id.indexOf('bytimeunit1') >= 0 && bytime1)
{
spanObj.units = getSelectedValueFromOptions(currentNode.options);
rel.spans[spanIndex++] = spanObj;
}
if((currentNode.id.indexOf('bytime2') >= 0) && currentNode.checked)
{
bytime2 = true;
spanObj = {};
}
if(currentNode.id.indexOf('byspan2') >= 0 && bytime2)
{
spanObj.oprator = getSelectedValueFromOptions(currentNode.options);
}
if(currentNode.id.indexOf('bytimevalue2') >= 0 && bytime2)
{
spanObj.value = currentNode.value;
}
if(currentNode.id.indexOf('bytimeunit2') >= 0 && bytime2)
{
spanObj.units = getSelectedValueFromOptions(currentNode.options);
rel.spans[spanIndex++] = spanObj;
}
}
}
if(allChildren.length > 0)
this.queryPanelObjForPrinting.subQryRelationStructure[subQryRelationStructureIndex++] = rel ;
}
}
}
//All variables are ready to print.
var infoQueryStatusTextObj = $('infoQueryStatusText');
this.createHTMLForPrinting(previewQueryOnly);
}
else{
alert("Currently no query is available for printing. \nPlease generate a query before clicking on [Print Query] button.");
}
};
this.PrintQueryTemplate = "<head>"+
"<title>Query Report</title>"+
// "<script type=\"text/javascript\" src=\"js-i2b2/cells/CRC/CRC_ctrlr_Query_Report.js\"></script>"+
"<link href='http://fonts.googleapis.com/css?family=Open+Sans' rel='stylesheet' type='text/css'>"+
"<link rel='stylesheet' TYPE='text/css' href='js-i2b2/cells/CRC/assets/query_report.css'>"+
"<link href='js-ext/c3code/c3.css' rel='stylesheet' type='text/css'>"+
"</head>"+
"<body>"+
"</body>";
this.PrintQueryBody =
"<div id=\"QueryReportLoading\"><img src=\"js-i2b2/cells/CRC/assets/loading.gif\" alt=\"Loading\"/></div>"+
"<div id='QueryReportContainer' class='no-show'>"+
"<span style='float:right;'><img src='assets/images/title.png'/></span>"+
"<span class='no-print' style='font-family:Arial'><img src=\"js-i2b2/cells/CRC/assets/print.png\"/> <a href='javascript:window.print()' title='Click here to print the report.'>Print Report</a></span>"+
"<div class='QRMainHeader'>Query Report</div>"+
"<table id='queryDetailsTable'></table>"+
"<div class='descHead'>Query Definition</div>"+
"<table id='qdHeaderTable'></table>"+
"<table id='qdContainerTable'></table><br>"+
"<table id='temporalQryEventsContainerTable'></table><br>"+
"<table id='temporalQryEventsRelationsTable'></table>"+
"<div id='qrsTitle' class='descHead'>Query Results</div>"+
"<br><div id='queryResultsContainer'><div id='tablesContainer'></div><div id='graphsContainer'></div></div>" +
"<span class='no-print' style='font-family:Arial'><img src=\"js-i2b2/cells/CRC/assets/print.png\"/> <a href='javascript:window.print()' title='Click here to print the report.'>Print Report</a></span>"+
"</div>";
this.createHTMLForPrinting = function(previewQueryOnly)
{
var QueryReportWin = null;
var QueryReportDiv = null;
var ua = window.navigator.userAgent;
var msie = ua.indexOf("MSIE ");
var browserIsIE = false;
if (msie > 0)
browserIsIE = true;
if(!(window.ActiveXObject) && "ActiveXObject" in window)
browserIsIE = true;
var savedHTML = null;
if(this.queryPanelObjForPrinting.mainQryStructure.length > 0){
if( previewQueryOnly){
if(browserIsIE){
i2b2.CRC.ctrlr.QT.queryReportViewer.yuiPanel = null;
i2b2.CRC.ctrlr.QT.queryReportViewer.show();
QueryReportDiv = jQuery(i2b2.CRC.ctrlr.QT.queryReportViewer.yuiPanel.body)//.find('#queryReport-viewer-body');
}
else{ //Open a new window for printing query for non-IE browsers
QueryReportWin = window.open("",'shrinePrintWindow','width=800,height=750,menubar=yes,resizable=yes,scrollbars=yes');
//Request came for query preview generation. Need to load the child window with template
// if(previewQueryOnly){
var doc = QueryReportWin.document;
doc.write(this.PrintQueryTemplate);
doc.write(this.PrintQueryBody);
doc.close();
// }
}
}
else
{
QueryReportDiv = $('infoQueryStatusReport');
QueryReportDiv.innerHTML=this.PrintQueryBody;
var printLinks = $$('.no-print');
if(printLinks)
printLinks.each(function(printLink){
var link = printLink.down('a');
if(link)
link.href="javascript:i2b2.CRC.ctrlr.QT.PrintElem('infoQueryStatusReport')";
});
}
//Populate the query details section
try{
if(QueryReportWin)
this.getQueryDetails(this.queryPanelObjForPrinting,this.query_user_id,previewQueryOnly,QueryReportWin,"queryDetailsTable");
if(QueryReportDiv)
this.getQueryDetails(this.queryPanelObjForPrinting,this.query_user_id,previewQueryOnly,false,"queryDetailsTable");
}
catch(e)
{
console.error(e);
}
//Populate the query description section
try{
if(QueryReportWin)
this.getQrTiming(this.queryPanelObjForPrinting,QueryReportWin,"qdHeaderTable");
if(QueryReportDiv)
this.getQrTiming(this.queryPanelObjForPrinting,false,"qdHeaderTable");
}
catch(e)
{
console.error(e);
}
//Populate the query structure description section
var qdDescription = this.getQueryDescription(this.queryPanelObjForPrinting.mainQryStructure);
if(qdDescription)
{
try{
var Row = "<tr><td width=\"5px\"><div class=\"tabSpace\"></div></td>";
var Cell = "<td class=\"eventsRelHdr\">" + "All Groups" + "</td>";
Row = Row + Cell;
if(QueryReportWin)
jQuery("#qdContainerTable",QueryReportWin.document).append(Row);
if(QueryReportDiv)
jQuery("#qdContainerTable").append(Row);
if(QueryReportWin)
jQuery("#qdContainerTable",QueryReportWin.document).append(qdDescription);
if(QueryReportDiv)
jQuery("#qdContainerTable").append(qdDescription);
}
catch(e)
{
console.error(e);
}
}
//Populate temporal query events description section
var qdDescription = this.getQueryDescription(this.queryPanelObjForPrinting.subQryStructure);
if(qdDescription)
{
try{
var Row = "<tr><td width=\"5px\"><div class=\"tabSpace\"></div></td>";
var Cell = "<td class=\"eventsRelHdr\">" + "All Events" + "</td>";
Row = Row + Cell;
if(QueryReportWin)
jQuery("#temporalQryEventsContainerTable",QueryReportWin.document).append(Row);
if(QueryReportDiv)
jQuery("#temporalQryEventsContainerTable").append(Row);
if(QueryReportWin)
jQuery("#temporalQryEventsContainerTable",QueryReportWin.document).append(qdDescription);
if(QueryReportDiv)
jQuery("#temporalQryEventsContainerTable").append(qdDescription);
}
catch(e)
{
console.error(e);
}
}
//Populate temporal query events relation section
if(this.queryPanelObjForPrinting.subQryStructure && this.queryPanelObjForPrinting.subQryStructure.length>0){
var temporalQEventsRelTable = null;
if(QueryReportWin)
temporalQEventsRelTable = QueryReportWin.document.getElementById("temporalQryEventsRelationsTable");
if(QueryReportDiv)
temporalQEventsRelTable = $("temporalQryEventsRelationsTable");
try{
var qdDescription = this.getTemporalQueryEventRelations(temporalQEventsRelTable);
}
catch(e)
{
console.error(e);
}
}
if(!previewQueryOnly){
//Populate the query results section
var resultsArray = i2b2.CRC.view.graphs.parseInputIntoArray(i2b2.CRC.ctrlr.currentQueryResults.resultString, true);
if(resultsArray && resultsArray.length>0){
try{
if(QueryReportWin)
this.createResultsForPrint(resultsArray,QueryReportWin);
else{
this.createResultsForPrint(resultsArray,false);
}
}
catch(e)
{
console.error(e);
}
}
else // There is no results, so no need to show Query Results section
{
var resultTitleDiv = null;
if(QueryReportWin)
resultTitleDiv = QueryReportWin.document.getElementById("qrsTitle");
if(QueryReportDiv)
resultTitleDiv = $("qrsTitle");
if(resultTitleDiv){
resultTitleDiv.parentNode.removeChild(resultTitleDiv);
}
}
}
else // This window is to only show the query structure preview, so no need to show Query Results section
{
var resultTitleDiv = null;
if(QueryReportWin)
resultTitleDiv = QueryReportWin.document.getElementById("qrsTitle");
if(QueryReportDiv)
resultTitleDiv = $("qrsTitle");
if(resultTitleDiv){
resultTitleDiv.parentNode.removeChild(resultTitleDiv);
}
}
var loaderDiv = null;
if(QueryReportWin)
loaderDiv = QueryReportWin.document.getElementById("QueryReportLoading");
if(QueryReportDiv){
// if(browserIsIE && printFromId)
loaderDiv = jQuery(QueryReportDiv).find('#QueryReportLoading');
// else
// loaderDiv = jQuery("#infoQueryStatusReport #QueryReportLoading");
}
if(loaderDiv)
jQuery(loaderDiv).addClass("no-show");
var resultsDiv = null;
if(QueryReportWin)
resultsDiv = QueryReportWin.document.getElementById("QueryReportContainer");
if(QueryReportDiv){
// if(browserIsIE && printFromId)
resultsDiv = jQuery(QueryReportDiv).find('#QueryReportContainer');
// else
// resultsDiv = $("#infoQueryStatusReport #QueryReportContainer");
}
if(resultsDiv)
jQuery(resultsDiv).removeClass("no-show");
if(browserIsIE && previewQueryOnly)
{
// this.PrintElem();
// jQuery(resultsDiv).html(savedHTML);
}
}
else{
alert("Currently no query is available for printing. \nPlease generate a query before clicking on [Print Query] button.");
}
};
this.getQueryDetails = function(queryObj,query_user_id,previewQueryOnly,QueryReportWin,objId){
var username = this.getQueryUserFullName(query_user_id);
var instanceRec = this.QI_Rec_ForPrinting;
var dateInfoProvided = false;
var diff = "";
var text = "";
var qrNameNotProvided = false;
if(queryObj.name.length <= 0){
text = 'No Query Name is currently provided';
qrNameNotProvided = true;
}
else{
if(previewQueryOnly)
text = 'The query is entitled "' + queryObj.name + '"';
else
text = 'The query entitled "' + queryObj.name ;
}
var formattedResObj = i2b2.CRC.ctrlr.currentQueryResults;
var resString = formattedResObj.resultString;
var computeTime = null;
if(resString.toLowerCase().indexOf("compute time")>0)
{
var textCompTime = resString.match(new RegExp("Compute Time" + "(.*)" + "\n"));
if(textCompTime.length>0)
{
var compText = textCompTime[0];
var splitcompText = compText.split(":");
if(splitcompText && splitcompText.length>1)
computeTime = splitcompText[1];
}
}
text = (qrNameNotProvided ? 'The query "' : '') + text +
'" was completed in '+ computeTime + '. This query was performed by "'+ username +'".';
if(QueryReportWin)
jQuery("#" + objId,QueryReportWin.document).append('<tr><td>' + text.toString() + '</td></tr>');
else
jQuery("#" + objId).append('<tr><td>' + text.toString() + '</td></tr>');
};
this.getQrTiming = function(queryObj,QueryReportWin,objId){
var tdText = "";
if(queryObj.timing)
{
switch(queryObj.timing)
{
case "ANY":
tdText = " Temporal Constraint: Treat All Groups Independently";
break;
case "SAMEVISIT":
tdText = " Temporal Constraint: Selected groups occur in the same financial encounter";
break;
case "TEMPORAL": //Temporal query
query_order = "Groups occur in the same sequence from left to right";
tdText = " Temporal Constraint: Population in which events occur";
}
if(QueryReportWin)
jQuery("#" + objId,QueryReportWin.document).append('<tr><td>' + tdText + '</td></tr>');
else
jQuery("#" + objId).append('<tr><td>' + tdText + '</td></tr>');
}
};
this.getQueryDescription = function(queryObj) {
var elemToAppend = "";
if(queryObj.length > 0)
{
elemToAppend = "<tr>";
var panelNum = 0;
elemToAppend = elemToAppend + "<td width=\"5px\"><div class=\"tabSpace\"></div></td>";
var tdObj = "<td width=\"610px\">";
queryObj.each(function(queryData){
var andCounter = 0;
var subQryEventNameDisplayed = false;
queryData.each(function(panelData){
var orCounter = 0;
var numItemsInPanel = panelData.items.length;
var panelContdivObj = "<div class=\"panelContainer";
var PanelTableObj = "<table width=\"615px\" border=\"0\">";
var PanelTableTrObj = "<tr>";
var PanelTableTd1Obj = "<td width=\"5px\"><div class=\"tabSpace\"></div></td>";
PanelTableTrObj = PanelTableTrObj + PanelTableTd1Obj;
var PanelTableTd2Obj = "<td width=\"610px\">";
panelNum++ ;
var panelOperatorDivId = "PanelOp-" + panelNum;
var panelOperatorDiv = "<div id=\"" + panelOperatorDivId + "\" class=\"opDiv\">";
if(andCounter == 0){
andCounter++ ;
if (panelData.exclude)
{
panelOperatorDiv = panelOperatorDiv + "NOT";
panelContdivObj = panelContdivObj + " notOpPanel";
}
}
else
{
var text = "AND";
if (panelData.exclude)
{
text = "AND NOT";
panelContdivObj = panelContdivObj + " notOpPanel";
}
panelOperatorDiv = panelOperatorDiv + text;
andCounter++ ;
}
var panelItemDiv = "<div class=\"panelItem\">";
var panelTiming = "";
switch(panelData.timing)
{
case "ANY":
panelTiming = "Independent of Visit";
break;
case "SAMEVISIT":
panelTiming = "Occurs in Same Encounter";
break;
case "SAMEINSTANCENUM":
panelTiming = "Items Instance will be the same";
break;
}
var panelDateFrom = "";
if(panelData.dateFrom)
{
if(panelData.dateFrom.Month && panelData.dateFrom.Day && panelData.dateFrom.Year)
panelDateFrom = panelData.dateFrom.Month + "/" + panelData.dateFrom.Day + "/" + panelData.dateFrom.Year;
else
{
panelDateFrom = panelData.dateFrom;
}
}
var panelDateTo = "";
if(panelData.dateTo)
{
if(panelData.dateTo.Month && panelData.dateTo.Day && panelData.dateTo.Year)
panelDateTo = panelData.dateTo.Month + "/" + panelData.dateTo.Day + "/" + panelData.dateTo.Year;
else
{
panelDateTo = panelData.dateTo;
}
}
var panelDateRangeText = "From earliest date available to latest date available";
if(panelData.dateFrom && panelData.dateTo)
{
if(panelDateFrom == "none")
panelDateFrom = "earliest date available";
if(panelDateTo == "none")
panelDateTo = "latest date available";
panelDateRangeText = "From " + panelDateFrom + " to " + panelDateTo;
}
else
{
if(panelDateFrom == "none")
panelDateFrom = "earliest date available";
if(panelDateTo == "none")
panelDateTo = "latest date available";
if(panelData.dateFrom && !panelData.dateTo)
panelDateRangeText = "From " + panelDateFrom + " to latest date available";
if(!panelData.dateFrom && panelData.dateTo)
panelDateRangeText = "From earliest date available to " + panelDateTo;
}
var panelItemOccurrenceText = "# of times an item is recorded is > " + panelData.occurs;
panelData.items.each(function(itemData){
var data = itemData;
if(!(typeof itemData.origData == 'undefined'))
data = itemData.origData;
var qrPanelItemTableObj = "<table class=\"qrPanelItemTable\">";
var qrPanelItemTableTrObj = "<tr>";
var imageObj = null;
//Evaluate the lab values
var str_lab_values = "";
if(data.LabValues){
var v_lab_values = data.LabValues;
if(v_lab_values.GeneralValueType == "NUMBER") {
var labOp = "";
switch(v_lab_values.NumericOp)
{
case "LT":
labOp = " <";
break;
case "LE":
labOp = " <=";
break;
case "EQ":
labOp = " =";
break;
case "BETWEEN":
labOp = " Between";
break;
case "GE":
labOp = " >=";
break;
case "GT":
labOp = " >";
break;
}
str_lab_values =
labOp +" ";
if((v_lab_values.ValueLow != null) ||
(v_lab_values.ValueLow != undefined)
){
str_lab_values +=
v_lab_values.ValueLow + " - "+
v_lab_values.ValueHigh;
} else {
str_lab_values +=
v_lab_values.Value;
}
str_lab_values += " "+ v_lab_values.UnitsCtrl;
}
//String
else if((v_lab_values.ValueString != null) ||
(v_lab_values.ValueString != undefined)
){
str_lab_values =
"By String: "+
v_lab_values.ValueString;
}
//Flag
else if((v_lab_values.ValueFlag != null) ||
(v_lab_values.ValueFlag != undefined)
){
var v_flag = "Normal";
if(v_lab_values.ValueFlag == "H"){
v_flag = "High";
}
else if(v_lab_values.ValueFlag == "L"){
v_flag = "Low";
}
str_lab_values =
"By Flag: "+ v_flag;
}
// End evaluate lab values
}
if(data.hasChildren) //It is a previous query inside a query, so no item-icon provided
{
if( data.hasChildren.indexOf("LA") >=0 )
{
imageObj = "<img src=\"js-i2b2/cells/ONT/assets/sdx_ONT_CONCPT_leaf.gif\" style=\"float:left;margin-top:5px;margin-right:5px;\">";
}
else
{
imageObj = "<img src=\"js-i2b2/cells/ONT/assets/sdx_ONT_CONCPT_branch-exp.gif\" style=\"float:left;margin-top: 5px;margin-right: 5px;\">";
}
}
if(imageObj)
{
var nameText = "";
if(data.newName)
nameText = data.newName;
else
nameText = data.name;
var qrPanelItemTableTdObj = "<td width=\"610px\" style=\"font-weight:bold; font-size:18px;\"><div width=\"400px\" style=\"display:inline;\">" + imageObj + "<div>" + " " + nameText + str_lab_values + "</div></div>" + "</td>";
}
else
{
var qrPanelItemTableTdObj = "<td width=\"610px\" style=\"font-weight:bold; font-size:18px;\">" + data.name + str_lab_values + "</td>";
}
qrPanelItemTableTrObj = qrPanelItemTableTrObj + qrPanelItemTableTdObj;
qrPanelItemTableObj = qrPanelItemTableObj + qrPanelItemTableTrObj + "</tr>";
qrPanelItemTableTrObj = "<tr>";
qrPanelItemTableTdObj = "<td width=\"610px\" style=\"font-weight:bold; font-size:14px;\">" + data.tooltip + "</td>";
qrPanelItemTableTrObj = qrPanelItemTableTrObj + qrPanelItemTableTdObj + "</tr>";
qrPanelItemTableObj = qrPanelItemTableObj + qrPanelItemTableTrObj;
qrPanelItemTableTrObj = "<tr>";
qrPanelItemTableTdObj = "<td width=\"610px\" style=\"font-size:14px;\">" + panelTiming + "</td>" ;
qrPanelItemTableTrObj = qrPanelItemTableTrObj + qrPanelItemTableTdObj + "</tr>";
qrPanelItemTableObj = qrPanelItemTableObj + qrPanelItemTableTrObj;
qrPanelItemTableTrObj = "<tr>";
qrPanelItemTableTdObj = "<td width=\"610px\" style=\"font-size:14px;\">" + panelDateRangeText + "</td>" ;
qrPanelItemTableTrObj = qrPanelItemTableTrObj + qrPanelItemTableTdObj + "</tr>";
qrPanelItemTableObj = qrPanelItemTableObj + qrPanelItemTableTrObj;
qrPanelItemTableTrObj = "<tr>";
qrPanelItemTableTdObj = "<td width=\"610px\" style=\"font-size:14px;\">" + panelItemOccurrenceText + "</td>" ;
qrPanelItemTableTrObj = qrPanelItemTableTrObj + qrPanelItemTableTdObj + "</tr>";
qrPanelItemTableObj = qrPanelItemTableObj + qrPanelItemTableTrObj;
qrPanelItemTableObj = qrPanelItemTableObj + "</table>";
panelItemDiv = panelItemDiv + "<br>" + qrPanelItemTableObj + "<br>";
if(++orCounter < numItemsInPanel)
{
var orDiv = "<div style=\"font-size: 20px;font-style: italic;font-weight: bold;\">" + "OR" + "</div>";
panelItemDiv = panelItemDiv + orDiv;
}
});
panelItemDiv = panelItemDiv + "</div>";
PanelTableTd2Obj = PanelTableTd2Obj + panelItemDiv + "</td>";
PanelTableTrObj = PanelTableTrObj + PanelTableTd2Obj + "</tr>";
PanelTableObj = PanelTableObj + PanelTableTrObj + "</table>";
panelContdivObj = panelContdivObj + "\">" + PanelTableObj + "</div>";
panelOperatorDiv = panelOperatorDiv + "</div>";
if(panelData.subquery)
{
if(!subQryEventNameDisplayed){
var eventNameDiv = "<div class=\"opDiv\">" + panelData.name + "</div>";
tdObj = tdObj + eventNameDiv + panelOperatorDiv + panelContdivObj;
subQryEventNameDisplayed = true;
}
else
tdObj = tdObj + panelOperatorDiv + panelContdivObj;
}
else
tdObj = tdObj + panelOperatorDiv + panelContdivObj;
});
});
}
if(elemToAppend)
elemToAppend = elemToAppend + tdObj + "</td></tr>";
return elemToAppend;
};
this.getTemporalQueryEventRelations = function(eventsRelTable){
if(this.queryPanelObjForPrinting.subQryRelationStructure.length > 0 )
{
var Row = new Element('tr');
var Cell = new Element('td',{'width':'5px'});
var divInCell = new Element('div',{'class':'tabSpace'});
Row.insert(Cell.insert(divInCell));
Cell = new Element('td',{'class':'eventsRelHdr'}).update('Order of Events');
Row.insert(Cell);
var tempDiv = new Element('div');
tempDiv.insert(Row);
jQuery(eventsRelTable).append(jQuery(tempDiv).html());
}
this.queryPanelObjForPrinting.subQryRelationStructure.each(function(relation){
var Row = new Element('tr');
var Cell = new Element('td',{'width':'5px'});
var divInCell = new Element('div',{'class':'tabSpace'});
Row.insert(Cell.insert(divInCell));
Cell = new Element('td', {'class' : 'eventsRel'});
var mnSpan = new Element('span', {'class' : 'eventsRelSpan'});
var mainSpan = new Element('center');
var textFirst = relation.firstQryJoinCol + " " + relation.firstQryOp + " occurrence for " + relation.firstQryEvntNm;
var firstSpan = new Element('span').update(textFirst);
mainSpan.insert(firstSpan).insert(new Element('br'));
var relationOperator = "";
switch(relation.operator)
{
case "LESS":
relationOperator = "Occurs Before";
break;
case "LESSEQUAL":
relationOperator = "Occurs On Or Before";
break;
case "EQUAL":
relationOperator = "Occurs Simultaneously With";
break;
case "GREATER":
relationOperator = "Occurs After";
break;
case "GREATEREQUAL":
relationOperator = "Occurs On or After";
break;
default:
break;
}
var textOperator = relationOperator.length>0 ? relationOperator : relation.operator;
var opSpan = new Element('span').update(textOperator);
mainSpan.insert(opSpan).insert(new Element('br'));
var textSecond = relation.secondQryJoinCol + " of " + relation.secondQryOp + " occurrence of " + relation.secondQryEvntNm;
var secondSpan = new Element('span').update(textSecond);
mainSpan.insert(secondSpan).insert(new Element('br'));
var firstSpan = true;
relation.spans.each(function(thisSpan){
switch(thisSpan.oprator)
{
case "GREATER" :
thisSpan.oprator = ">";
break;
case "GREATEREQUAL" :
thisSpan.oprator = ">=";
break;
case "EQUAL" :
thisSpan.oprator = "=";
break;
case "LESSEQUAL" :
thisSpan.oprator = "<=";
break;
case "LESS" :
thisSpan.oprator = "<";
break;
default:
break;
}
var text = "";
if(firstSpan)
{
text = " By " + thisSpan.oprator + " " + thisSpan.value + " " + thisSpan.units;
firstSpan = false;
}
else
{
text = " And " + thisSpan.oprator + " " + thisSpan.value + " " + thisSpan.units;
}
mainSpan.insert((new Element('span')).update(text)).insert(new Element('br'));
});
mnSpan.insert(mainSpan);
Row.insert((Cell).insert(mnSpan));
var tempDiv = new Element('div');
tempDiv.insert(Row);
jQuery(eventsRelTable).append(jQuery(tempDiv).html());
});
};
this.createResultsForPrint = function(dataArray,child){
var _2DResultsArray = i2b2.CRC.view.downloadData.getFormattedResults(dataArray);
if(_2DResultsArray && _2DResultsArray.length>0)
{
//Populate the tables
var clonedArray = _2DResultsArray.slice(0);
var allSites = $H();
var allSitesRow = clonedArray[0];
if(allSitesRow && allSitesRow.length>0)
{
for(var x = 1; x < allSitesRow.length ; x++)
{
var siteName = allSitesRow[x];
allSites.set(siteName,x); //SiteName,Index pairs
}
}
clonedArray = _2DResultsArray.slice(0);
var allUniqueBreakDowns = $H();
for(var i = 0 ; i < clonedArray.length ; i++)
{
var brkDownEntry = clonedArray[i][0];
if(brkDownEntry.length>0)
{
var tmpBrkDown = brkDownEntry.split("|");
if(tmpBrkDown && tmpBrkDown.length>1)
{
thisBrkDown = tmpBrkDown[0];
allUniqueBreakDowns.set(thisBrkDown,thisBrkDown);
}
}
}
//Take care of the patient number element separately
//Create the data array for table creation
clonedArray = _2DResultsArray.slice(0);
var dataArray = new Array();
var thisRow = clonedArray[0].slice(0);
thisRow[0] = "";
dataArray.push(thisRow);
thisRow = clonedArray[1].slice(0);
thisRow[0] = "Total Patients Count";
dataArray.push(thisRow);
if(dataArray && dataArray.length>0)
{
jQuery('#tablesContainer').append("<br/>");
jQuery('#tablesContainer').append("<div class='subTitleDivs'>Total Number of Cases</div>" );
var sortArray = i2b2.CRC.ctrlr.QT.createShorterDataArray(dataArray);
if(sortArray && sortArray.length>0)
i2b2.CRC.ctrlr.QT.createTable(sortArray);
else
i2b2.CRC.ctrlr.QT.createTable(dataArray);
}
//Create tables for the breakdowns
allUniqueBreakDowns.each(function(brkDown)
{
clonedArray = _2DResultsArray.slice(0);
dataArray = new Array();
var thisRow = _2DResultsArray[0].slice(0);
thisRow[0] = "";
dataArray.push(thisRow);
var category = "";
for(var i = 1; i<clonedArray.length;i++)
{
var thisbrkDown = clonedArray[i][0];
if(thisbrkDown.toLowerCase().indexOf(brkDown.key.toLowerCase())>=0)
{
thisRow = clonedArray[i];
var tmpBrkDown = thisbrkDown.split("|");
if(tmpBrkDown && tmpBrkDown.length>1)
{
category = tmpBrkDown[0];
thisRow[0][0] = tmpBrkDown[1];
}
dataArray.push(thisRow);
}
}
if(dataArray && dataArray.length>0)
{
jQuery('#tablesContainer').append("<br/>");
jQuery('#tablesContainer').append("<div class='subTitleDivs'>Total Unique Patients by " + category +"</div>" );
var sortArray = i2b2.CRC.ctrlr.QT.createShorterDataArray(dataArray);
if(sortArray && sortArray.length>0)
i2b2.CRC.ctrlr.QT.createTable(sortArray);
else
i2b2.CRC.ctrlr.QT.createTable(dataArray);
}
});
//Populate charts
jQuery('#tablesContainer').append("<br/><br/>");
i2b2.CRC.view.graphs.createGraphs("graphsContainer", i2b2.CRC.ctrlr.currentQueryResults.resultString, true);
}
};
this.createShorterDataArray = function(dataArray)
{
try{
if(dataArray.length>0)
{
var siteRow = dataArray[0];
var totalNumOfSites = siteRow.length - 1;
if(totalNumOfSites > 10)
{
var finalArr = [];
var loopNum = 0;
var totalLoopsRequired = Math.floor(totalNumOfSites/10);
if(totalNumOfSites%10 >0)
totalLoopsRequired++;
while(loopNum<totalLoopsRequired){
var newRow = new Array(11);
for(var i = 0; i < dataArray.length; i++) {
newRow = new Array(11);
//Decide the first column entry for current row
var thisRow = dataArray[i];
newRow[0] = thisRow[0];
for(var j=1; j<=10; j++)
{
var actualCol = 10*loopNum + j;
if(actualCol < thisRow.length)
newRow[j] = thisRow[actualCol];
else
break;
}
finalArr.push(newRow);
}
loopNum++;
}
return finalArr;
}
else
return dataArray;
}
else
return dataArray;
}
catch(e)
{
console.error(e);
}
};
this.createTable = function(dataArray)
{
var content = "<table class='reultsTable'>";
for(var i = 0 ; i < dataArray.length ; i++)
{
var thisRow = dataArray[i];
if(i==0)
{
content += "<tr>";
for(var j = 0 ; j < thisRow.length ; j++)
{
content += "<th class='descResultshead'>" + thisRow[j] + "</th>";
}
content += "</tr>";
}
else
{
content += "<tr>";
var thisRowIsHeader = false;
for(var j = 0 ; j < thisRow.length ; j++)
{
var thisRowColItem = thisRow[j];
if(thisRowColItem)
{
- if((thisRowColItem.trim().indexOf("10 patients or fewer"))>0)
+
+ if(i2b2.h.isMinObfuscation(thisRowColItem.trim())
+ {
thisRowColItem = 0;
+ }
+
if(i==0 && j==0)
content += "<td class='descResults'> </td>";
else{
if(thisRowColItem==' '){
if(j == 0)
thisRowIsHeader = true;
if(thisRowIsHeader)
content += "<td class='descResults descResultshead'> </td>";
else
content += "<td class='descResults'> </td>";
}
else{
if(thisRowIsHeader)
content += "<td class='descResults descResultshead'>" + thisRowColItem + "</td>";
else
content += "<td class='descResults'>" + thisRowColItem + "</td>";
}
}
}
else{
if(j == 0)
thisRowIsHeader = true;
if(thisRowIsHeader)
content += "<td class='descResults descResultshead'> </td>";
else
content += "<td class='descResults'> </td>";
}
}
content += "</tr>";
}
}
content += "</table>";
jQuery('#tablesContainer').append(content);
}
this.getQueryUserFullName = function(query_user_id)
{
var returnValue = query_user_id;
if(query_user_id)
{
try {
var response = i2b2.PM.ajax.getUser("CRC:PrintQueryNew", {user_id:query_user_id});
response.parse();
var data = response.model[0];
if (data.full_name) { returnValue = data.full_name;}
}
catch (e) {}
}
return returnValue;
};
function getSelectedValueFromOptions(options)
{
var value = null;
for(k = 0; k < options.length; k++) {
var thisOption = options[k];
if(thisOption.selected == true)
{
value = options[k].innerHTML;
break;
}
}
return value;
};
this.PrintElem = function(divIdToPrint)
{
// Popup(jQuery("#" + divToPrint).html());
if(jQuery("#" + divIdToPrint)){
var contents = jQuery("#" + divIdToPrint).html();
var frame1 = jQuery("<iframe />");
frame1[0].name = "frame1";
frame1.css({ "position": "absolute", "top": "-1000000px" });
jQuery("body").append(frame1);
var frameDoc = frame1[0].contentWindow ? frame1[0].contentWindow : frame1[0].contentDocument.document ? frame1[0].contentDocument.document : frame1[0].contentDocument;
frameDoc.document.open();
//Create a new HTML document.
frameDoc.document.write("<html><head><title>Query Report</title>");
//Append the external CSS file.
frameDoc.document.write("<link rel=\"stylesheet\" href=\"js-i2b2/cells/CRC/assets/query_report.css\">");
frameDoc.document.write('<link href=\'js-ext/c3code/c3.css\' rel=\'stylesheet\' type=\'text/css\'></head><body>');
frameDoc.document.write("</head><body>");
//Append the DIV contents.
frameDoc.document.write(contents);
frameDoc.document.write('</body></html>');
frameDoc.document.close();
setTimeout(function () {
window.frames["frame1"].focus();
window.frames["frame1"].print();
frame1.remove();
}, 500);
}
else
alert("Query report can't be printed!");
};
/**********************
* End Query Report BG
**********************/
}
console.timeEnd('execute time');
console.groupEnd();
diff --git a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_sdx_QI.js b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_sdx_QI.js
index c7ba435c1..3c508a24a 100644
--- a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_sdx_QI.js
+++ b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_sdx_QI.js
@@ -1,747 +1,747 @@
/**
* @projectDescription The SDX controller library for the QueryInstance data-type.
* @namespace i2b2.sdx.TypeControllers.QI
* @inherits i2b2.sdx.TypeControllers
* @author Nick Benik, Griffin Weber MD PhD
* @version 1.3
* @see i2b2.sdx
* ----------------------------------------------------------------------------------------
* updated 9-15-08: RC4 launch [Nick Benik]
*/
console.group('Load & Execute component file: CRC > SDX > QueryInstance');
console.time('execute time');
i2b2.sdx.TypeControllers.QI = {};
i2b2.sdx.TypeControllers.QI.model = {};
// *********************************************************************************
// ENCAPSULATE DATA
// *********************************************************************************
/**
* Get the sdxInfo data template for all QueryMaster.
* @memberOf i2b2.sdx.TypeControllers.QM
* @method
* @return {Object} Returns a data object containing sdxType, sdxKeyName, sdxControlCell info for QueryMaster-type objects.
* @author Nick Benik
* @version 1.0
* @alias i2b2.sdx.Master.EncapsulateData
*/
i2b2.sdx.TypeControllers.QI.getEncapsulateInfo = function() {
// this function returns the encapsulation head information
return {sdxType: 'QI', sdxKeyName: 'query_instance_id', sdxControlCell:'CRC', sdxDisplayNameKey:'title'};
}
// *********************************************************************************
// GENERATE HTML (DEFAULT HANDLER)
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.RenderHTML= function(sdxData, options, targetDiv) {
// OPTIONS:
// title: string
// showchildren: true | false
// cssClass: string
// icon: [data object]
// icon: (filename of img, appended to i2b2_root+cellDir + '/assets')
// iconExp: (filename of img, appended to i2b2_root+cellDir + '/assets')
// dragdrop: string (function name)
// context: string
// click: string
// dblclick: string
if (Object.isUndefined(options)) { options = {}; }
var render = {html: retHtml, htmlID: id};
var conceptId = sdxData.name;
var id = "CRC_ID-" + i2b2.GUID();
// process drag drop controllers
if (!Object.isUndefined(options.dragdrop)) {
// NOTE TO SELF: should attachment of node dragdrop controller be handled by the SDX system as well?
// This would ensure removal of the onmouseover call in a cross-browser way
var sDD = ' onmouseover="' + options.dragdrop + '(\''+ targetDiv.id +'\',\'' + id + '\')" ';
} else {
var sDD = '';
}
if (Object.isUndefined(options.cssClass)) { options.cssClass = 'sdxDefaultQI';}
// user can override
bCanExp = true;
if (Object.isBoolean(options.showchildren)) {
bCanExp = options.showchildren;
}
render.canExpand = bCanExp;
render.iconType = "QI";
if (!Object.isUndefined(options.icon)) { render.icon = i2b2.hive.cfg.urlFramework + 'cells/CRC/assets/'+ options.icon }
if (!Object.isUndefined(options.iconExp)) { render.iconExp = i2b2.hive.cfg.urlFramework + 'cells/CRC/assets/'+ options.iconExp }
// in cases of one set icon, copy valid icon to the missing icon
if (Object.isUndefined(render.icon) && !Object.isUndefined(render.iconExp)) { render.icon = sdxData.iconExp; }
if (!Object.isUndefined(render.icon) && Object.isUndefined(render.iconExp)) { render.iconExp = sdxData.icon; }
// handle the event controllers
var sMainEvents = sDD;
var sImgEvents = sDD;
// **** Render the HTML ***
var retHtml = '<DIV id="' + id + '" ' + sMainEvents + ' style="white-space:nowrap;cursor:pointer;">';
retHtml += '<DIV ';
if (Object.isString(options.cssClass)) {
retHtml += ' class="'+options.cssClass+'" ';
} else {
retHtml += ' class= "sdxDefaultQI" ';
}
retHtml += sImgEvents;
retHtml += '>';
retHtml += '<IMG src="'+render.icon+'"/> ';
if (!Object.isUndefined(options.title)) {
retHtml += options.title;
} else {
console.warn('[SDX RenderHTML] no title was given in the creation options for an CRC>QI node!');
retHtml += ' QI '+id;
}
retHtml += '</DIV></DIV>';
render.html = retHtml;
render.htmlID = id;
var retObj = {};
Object.extend(retObj, sdxData);
retObj.renderData = render;
return retObj;
}
// *********************************************************************************
// HANDLE HOVER OVER TARGET ENTRY (DEFAULT HANDLER)
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.onHoverOver = function(e, id, ddProxy) {
var el = $(id);
if (el) { Element.addClassName(el,'ddQITarget'); }
}
// *********************************************************************************
// HANDLE HOVER OVER TARGET EXIT (DEFAULT HANDLER)
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.onHoverOut = function(e, id, ddProxy) {
var el = $(id);
if (el) { Element.removeClassName(el,'ddQITarget'); }
}
// *********************************************************************************
// ADD DATA TO TREENODE (DEFAULT HANDLER)
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.AppendTreeNode = function(yuiTree, yuiRootNode, sdxDataPack, callbackLoader) {
var myobj = { html: sdxDataPack.renderData.html, nodeid: sdxDataPack.renderData.htmlID}
var tmpNode = new YAHOO.widget.HTMLNode(myobj, yuiRootNode, false, true);
if (sdxDataPack.renderData.canExpand && !Object.isUndefined(callbackLoader)) {
// add the callback to load child nodes
sdxDataPack.sdxInfo.sdxLoadChildren = callbackLoader;
}
tmpNode.data.i2b2_SDX= sdxDataPack;
tmpNode.toggle = function() {
if (!this.tree.locked && ( this.hasChildren(true) ) ) {
var data = this.data.i2b2_SDX.renderData;
var img = this.getContentEl();
img = Element.select(img,'img')[0];
if (this.expanded) {
img.src = data.icon;
this.collapse();
} else {
img.src = data.iconExp;
this.expand();
}
}
};
if (!sdxDataPack.renderData.canExpand) { tmpNode.dynamicLoadComplete = true; }
return tmpNode;
}
/**
* Get the child records for the given QueryInstance.
* @param {Object} sdxParentNode The parent node we want to find the children of.
* @param {ScopedCallback} onCompleteCallback A scoped-callback function to be executed using the results array.
* @return {Boolean} Returns true to the calling function.
* @return {Array} Returns an array of QueryInstance data represented as SDX Objects (without render data) to the callback function passed.
* @memberOf i2b2.sdx.TypeControllers.QI
* @method
* @author Nick Benik
* @version 1.0
* @alias i2b2.sdx.Master.getChildRecords
*/
i2b2.sdx.TypeControllers.QI.getChildRecords = function(sdxParentNode, onCompleteCallback, options) {
var scopedCallback = new i2b2_scopedCallback();
scopedCallback.scope = sdxParentNode;
scopedCallback.callback = function(results) {
var cl_node = sdxParentNode;
var cl_onCompleteCB = onCompleteCallback;
// THIS function is used to process the AJAX results of the getChild call
// results data object contains the following attributes:
// refXML: xmlDomObject <--- for data processing
// msgRequest: xml (string)
// msgResponse: xml (string)
// error: boolean
// errorStatus: string [only with error=true]
// errorMsg: string [only with error=true]
var retMsg = {
error: results.error,
msgRequest: results.msgRequest,
msgResponse: results.msgResponse,
msgUrl: results.msgUrl,
results: null
};
var retChildren = [];
// find parent node QI node in data model
var dm = i2b2.CRC.model.QueryMasters;
var dm_loc = 'i2b2.CRC.model.QueryMasters';
// Here comes REAL fun, a self-recursive anonymous function instantiated by iteration
// via recursive "collection" calls on Hash objects (Prototype toolkit)
var findFunc = function(item_rec) {
var hash_key = item_rec.key;
var gen_rec = item_rec.value;
var cl_keyValue = keyValue; // <-- closure variable: keyValue must be set before running function
if (gen_rec.sdxInfo.sdxType=="QI") {
// see if this record matches our search
if (gen_rec.sdxInfo.sdxKeyValue == cl_keyValue) { return gen_rec; }
} else {
// recurse into the object's children
var match_children = gen_rec.children.collect(findFunc);
return match_children;
}
}
var keyValue = cl_node.sdxInfo.sdxKeyValue.toString();
var parent_QM = dm.collect(findFunc);
parent_QM = parent_QM.flatten();
parent_QM = parent_QM.compact();
if (parent_QM[0]) {
var pn = parent_QM[0];
} else {
console.error('Parent QM node was not found in the CRC data model!');
return false;
}
// extract records from XML msg
var ps = results.refXML.getElementsByTagName('query_result_instance');
var dm = i2b2.CRC.model.QueryMasters;
var x_plusmn_pats = 3;
for(var i1=0; i1<ps.length; i1++) {
var o = new Object;
o.xmlOrig = ps[i1];
o.QI_id = pn.sdxInfo.sdxKeyValue;
o.QM_id = pn.parent.sdxInfo.sdxKeyValue;
o.size = i2b2.h.getXNodeVal(ps[i1],'set_size');
o.start_date = i2b2.h.getXNodeVal(ps[i1],'start_date');
o.end_date = i2b2.h.getXNodeVal(ps[i1],'end_date');
o.description = i2b2.h.getXNodeVal(ps[i1],'description');
o.qs_name = i2b2.h.getXNodeVal(ps[i1],'query_status_type/name');
//try{
o.result_type = i2b2.h.getXNodeVal(ps[i1],'query_result_type/name');
//o.result_type = i2b2.h.XPath(ps[i1],'query_result_type/name/text()')[0].nodeValue;
//}
//catch(e){
if(typeof o.result_type == 'undefined'){
try{
o.result_type = "SHRINE_ERROR" ;
o.qs_name = i2b2.h.getXNodeVal(ps[i1],'query_status_type/name');
o.description = i2b2.h.getXNodeVal(ps[i1],'description');
o.qs_description = i2b2.h.getXNodeVal(ps[i1],'query_status_type/description');
}
catch(e){
o.result_type = "OTH_ERROR" ;
}
}
//}
var sdxDataNodeChild = null;
//Added for previous query issue -> oRecord should be o object
oRecord = o;
var title = null;
//If Query status = PROCESSING skip printing results
if(o.qs_name == "PROCESSING"){
var t = o.description;
if (!t) { t="Unknown"; }
var d = new Date().getTime();
o.result_instance_id = d;
title = t+" - Still Processing Request";
o.titleCRC = title;
o.title = pn.parent.sdxInfo.sdxDisplayName + ' [PATIENT_COUNT_XML_'+ d +']';
//o.title = 'PATIENT_COUNT_XML_'+o.PRC_id;
sdxDataNodeChild = i2b2.sdx.Master.EncapsulateData('PRC',o);
}
//All other Query Status
else{
switch (o.result_type) {
case "PATIENTSET":
o.PRS_id = i2b2.h.getXNodeVal(ps[i1],'result_instance_id');
// use given title if it exist otherwise generate a title
try {
var t = o.description;
if((t != null) &&
(t == "AGGREGATED")
){
x_plusmn_pats = ((ps.length) - 1) * 3;
}
} catch(e) { var t = null; }
if (!t) { t="Patient Set"; }
// create the title using shrine setting
if (oRecord.size >= 10) {
if (i2b2.PM.model.userRoles.lastIndexOf("DATA_AGG") > -1) {
title = t+" - "+oRecord.size+" patients";
} else {
title = t+" - "+oRecord.size+" ±"+ x_plusmn_pats +
" patients";
}
} else {
if (i2b2.PM.model.userRoles.lastIndexOf("DATA_AGG") > -1) {
title = t+" - "+oRecord.size+" patients";
} else {
- title = t+" - 10 patients or fewer";
+ title = t + " - " + i2b2.h.getMinResultText();
}
}
o.titleCRC = title;
o.title = pn.parent.sdxInfo.sdxDisplayName + ' [PATIENTSET_'+o.PRS_id+']';
o.result_instance_id = o.PRS_id;
sdxDataNodeChild = i2b2.sdx.Master.EncapsulateData('PRS',o);
break;
case "PATIENT_COUNT_XML":
o.PRC_id = i2b2.h.getXNodeVal(ps[i1],'result_instance_id');
// use given title if it exist otherwise generate a title
try {
var t = o.description;
if((t != null) &&
(t == "AGGREGATED")
){
x_plusmn_pats = ((ps.length) - 1) * 3;
}
} catch(e) { var t = null; }
if (!t) { t="Patient Count"; }
// create the title using shrine setting
if (oRecord.size >= 10) {
//@pcori_webclient
if (i2b2.PM.model.userRoles.lastIndexOf("DATA_AGG") > -1) {
title = t+" - "+oRecord.size+" patients";
} else {
title = t+" - "+oRecord.size+" ±"+ x_plusmn_pats +
" patients";
}
} else {
if (i2b2.PM.model.userRoles.lastIndexOf("DATA_AGG") > -1) {
title = t+" - "+oRecord.size+" patients";
} else {
- title = t+" - 10 patients or fewer";
+ title = t + " - " + i2b2.h.getMinResultText();
}
}
o.titleCRC = title;
o.title = pn.parent.sdxInfo.sdxDisplayName + ' [PATIENT_COUNT_XML_'+o.PRC_id+']';
//o.title = 'PATIENT_COUNT_XML_'+o.PRC_id;
o.result_instance_id = o.PRC_id;
sdxDataNodeChild = i2b2.sdx.Master.EncapsulateData('PRC',o);
break;
case "SHRINE_ERROR":
try{
if(o.qs_name == "UNAVALIABLE"){
title = o.description +" - "+ o.qs_description;
}
else{
title = o.description +" - "+ o.qs_description;
}
}
catch(e){
title = o.description +" - "+ e.message;
}
var d = new Date().getTime();
o.titleCRC = title;
o.result_instance_id = d;
o.title = pn.parent.sdxInfo.sdxDisplayName + ' [PATIENT_COUNT_XML_'+ d +']';
//o.title = 'PATIENT_COUNT_XML_'+o.PRC_id;
//o.result_instance_id = o.PRC_id;
sdxDataNodeChild = i2b2.sdx.Master.EncapsulateData('PRC',o);
break;
}
}
// save record in the SDX system
sdxDataNode = i2b2.sdx.Master.Save(sdxDataNodeChild, pn);
// append the data node to our returned results
retChildren.push(sdxDataNode);
}
pn.children.loaded = true;
// TODO: broadcast a data update event of the CRC data model
retMsg.results = retChildren;
if (getObjectClass(cl_onCompleteCB)=='i2b2_scopedCallback') {
cl_onCompleteCB.callback.call(cl_onCompleteCB.scope, retMsg);
} else {
cl_onCompleteCB(retMsg);
}
}
i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryInstanceId("CRC:SDX:QueryInstance", {qi_key_value: sdxParentNode.sdxInfo.sdxKeyValue}, scopedCallback);
}
i2b2.sdx.TypeControllers.QI.SaveToDataModel = function(sdxData, sdxParentNode) {
// save to CRC data model
if (!sdxParentNode) { return false; }
var qm_id = sdxData.sdxInfo.sdxKeyValue;
var qm_hash = i2b2.sdx.Master._KeyHash(qm_id);
// class for all SDX communications
function i2b2_SDX_Encapsulation_EXTENDED() {}
// create an instance and populate with info
var t = new i2b2_SDX_Encapsulation_EXTENDED();
t.origData = Object.clone(sdxData.origData);
t.sdxInfo = Object.clone(sdxData.sdxInfo);
t.parent = sdxParentNode;
t.children = new Hash();
t.children.loaded = false;
// add to hash
sdxParentNode.children.set(qm_hash, t);
// TODO: send data update signal (use JOINING-MUTEX or AGGREGATING-MUTEX to avoid rapid fire of event!)
return t;
}
i2b2.sdx.TypeControllers.QI.LoadFromDataModel = function(key_value) {}
i2b2.sdx.TypeControllers.QI.ClearAllFromDataModel= function(sdxOptionalParent) {
if (sdxOptionalParent) {
try {
var findFunc = function(item_rec) {
// this function expects the second argument to be the target node's key value
var hash_key = item_rec[0];
var QM_rec = item_rec[1];
if (QM_rec.sdxInfo.sdxKeyValue == this.strip()) { return true; }
}
var dm_loc = 'i2b2.CRC.model.QueryMasters.'+i2b2.sdx.Master._KeyHash(sdxOptionalParent.sdxInfo.sdxKeyValue);
var targets = i2b2.CRC.model.QueryMasters.findAll(findFunc, sdxOptionalParent.sdxInfo.sdxKeyValue);
for (var i=0; i < targets.length; i++) {
var t = parent_QM[i].value;
t.children = new Hash();
}
} catch(e) { console.error('Could not clear children of given parent node!'); }
} else {
var dm_loc = 'i2b2.CRC.model.QueryMasters';
i2b2.CRC.model.QueryMasters.each(function(item_rec) {
try {
item_rec[1].children = new Hash();
} catch(e) { console.error('Could not clear children of all QueryMasters'); }
});
}
// TODO: send data update signal (use JOINING-MUTEX or AGGREGATING-MUTEX to avoid rapid fire of event!)
// updated dm_loc of the data model
return true;
}
i2b2.sdx.TypeControllers.QI.LoadChildrenFromTreeview = function(node, onCompleteCallback) {
var scopedCallback = new i2b2_scopedCallback();
scopedCallback.scope = node.data.i2b2_SDX;
scopedCallback.callback = function(retCellPack) {
var cl_node = node;
var cl_onCompleteCB = onCompleteCallback;
var results = retCellPack.results;
for(var i1=0; i1<1*results.length; i1++) {
var o = results[i1];
// add visual element
switch (o.sdxInfo.sdxType) {
case "PRS": // patient record set
// add visual element
if (i2b2.PM.model.userRoles.indexOf("DATA_LDS") == -1) {
var renderOptions = {
dragdrop: "i2b2.sdx.TypeControllers.PRS.AttachDrag2Data",
icon: "sdx_CRC_PRS.jpg",
title: o.origData.titleCRC,
showchildren: false
};
} else
{
var renderOptions = {
dragdrop: "i2b2.sdx.TypeControllers.PRS.AttachDrag2Data",
icon: "sdx_CRC_PRS.jpg",
title: o.origData.titleCRC,
showchildren: true
};
}
break;
case "ENS": // encounter record set
// add visual element
if (i2b2.PM.model.userRoles.indexOf("DATA_LDS") == -1) {
var renderOptions = {
dragdrop: "i2b2.sdx.TypeControllers.ENS.AttachDrag2Data",
icon: "sdx_CRC_PRS.jpg",
title: o.origData.titleCRC,
showchildren: false
};
} else {
var renderOptions = {
dragdrop: "i2b2.sdx.TypeControllers.ENS.AttachDrag2Data",
icon: "sdx_CRC_PRS.jpg",
title: o.origData.titleCRC,
showchildren: true
};
}
break;
case "PRC": // patient record count
var renderOptions = {
dragdrop: "i2b2.sdx.TypeControllers.PRC.AttachDrag2Data",
icon: "sdx_CRC_PRC.jpg",
title: o.origData.titleCRC,
showchildren: false
};
break;
}
var sdxRenderData = i2b2.sdx.Master.RenderHTML(cl_node.tree.id, o, renderOptions);
i2b2.sdx.Master.AppendTreeNode(cl_node.tree, cl_node, sdxRenderData);
}
// handle the callback
if (getObjectClass(cl_onCompleteCB)=='i2b2_scopedCallback') {
cl_onCompleteCB.callback.call(cl_onCompleteCB.scope, retCellPack);
} else {
cl_onCompleteCB(retCellPack);
}
}
var sdxParentNode = node.data.i2b2_SDX;
var options = i2b2.CRC.params;
i2b2.sdx.Master.getChildRecords(sdxParentNode, scopedCallback, options);
}
// *********************************************************************************
// ATTACH DRAG TO DATA (DEFAULT HANDLER)
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.AttachDrag2Data = function(divParentID, divDataID){
if (Object.isUndefined($(divDataID))) { return false; }
// get the i2b2 data from the yuiTree node
var tvTree = YAHOO.widget.TreeView.getTree(divParentID);
var tvNode = tvTree.getNodeByProperty('nodeid', divDataID);
if (!Object.isUndefined(tvNode.DDProxy)) { return true; }
// attach DD
var t = new i2b2.sdx.TypeControllers.QI.DragDrop(divDataID);
t.yuiTree = tvTree;
t.yuiTreeNode = tvNode;
tvNode.DDProxy = t;
// clear the mouseover attachment function
var tdn = $(divDataID);
if (!Object.isUndefined(tdn.onmouseover)) {
try {
delete tdn.onmouseover;
} catch(e) {
tdn.onmouseover;
}
}
if (!Object.isUndefined(tdn.attributes)) {
for (var i=0;i<tdn.attributes.length; i++) {
if (tdn.attributes[i].name=="onmouseover") {
try {
delete tdn.onmouseover;
} catch(e) {
tdn.onmouseover;
}
}
}
}
}
// *********************************************************************************
// DRAG DROP PROXY CONTROLLER
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.DragDrop = function(id, config) {
if (id) {
this.init(id, 'QI',{isTarget:false});
this.initFrame();
}
var s = this.getDragEl().style;
s.borderColor = "transparent";
s.opacity = 0.75;
s.filter = "alpha(opacity=75)";
s.whiteSpace = "nowrap";
s.overflow = "hidden";
s.textOverflow = "ellipsis";
// add this QM to other DragDrop groups (for translation functionality)
this.addToGroup("PRS");
};
YAHOO.extend(i2b2.sdx.TypeControllers.QI.DragDrop, YAHOO.util.DDProxy);
i2b2.sdx.TypeControllers.QI.DragDrop.prototype.startDrag = function(x, y) {
var dragEl = this.getDragEl();
var clickEl = this.getEl();
dragEl.innerHTML = clickEl.innerHTML;
dragEl.className = clickEl.className;
dragEl.style.backgroundColor = '#FFFFEE';
dragEl.style.color = clickEl.style.color;
dragEl.style.border = "1px solid blue";
dragEl.style.width = "160px";
dragEl.style.height = "20px";
this.setDelta(15,10);
};
i2b2.sdx.TypeControllers.QI.DragDrop.prototype.endDrag = function(e) {
// remove DragDrop targeting CCS
var targets = YAHOO.util.DDM.getRelated(this, true);
for (var i=0; i<targets.length; i++) {
var targetEl = targets[i]._domRef;
try {
var ddCtrlr = YAHOO.util.DragDropMgr.getDDById(targetEl.id);
if(ddCtrlr.groups['QI']) { i2b2.sdx.Master.onHoverOut('QI', e, targetEl, this); }
} catch(e) {}
}
};
i2b2.sdx.TypeControllers.QI.DragDrop.prototype.alignElWithMouse = function(el, iPageX, iPageY) {
var oCoord = this.getTargetCoord(iPageX, iPageY);
if (!this.deltaSetXY) {
var aCoord = [oCoord.x, oCoord.y];
YAHOO.util.Dom.setXY(el, aCoord);
var newLeft = parseInt( YAHOO.util.Dom.getStyle(el, "left"), 10 );
var newTop = parseInt( YAHOO.util.Dom.getStyle(el, "top" ), 10 );
this.deltaSetXY = [ newLeft - oCoord.x, newTop - oCoord.y ];
} else {
var posX = (oCoord.x + this.deltaSetXY[0]);
var posY = (oCoord.y + this.deltaSetXY[1]);
var scrSize = document.viewport.getDimensions();
var maxX = parseInt(scrSize.width-25-160);
var maxY = parseInt(scrSize.height-25);
if (posX > maxX) {posX = maxX;}
if (posX < 6) {posX = 6;}
if (posY > maxY) {posY = maxY;}
if (posY < 6) {posY = 6;}
YAHOO.util.Dom.setStyle(el, "left", posX + "px");
YAHOO.util.Dom.setStyle(el, "top", posY + "px");
}
this.cachePosition(oCoord.x, oCoord.y);
this.autoScroll(oCoord.x, oCoord.y, el.offsetHeight, el.offsetWidth);
};
i2b2.sdx.TypeControllers.QI.DragDrop.prototype.onDragOver = function(e, id) {
// check to see if on-the-fly object type translation is needed
var translateTo = false;
if (Object.isUndefined(this.DDM.dragOvers[id])) { return false; }
// we must save which target we are over for the DragOut event later
this.lastDragOver = this.DDM.dragOvers[id];
var t = this.DDM.dragOvers[id].groups;
if (!t['QI']) {
// TRANSLATION NEEDED!
if (t['PRS']) {
translateTo = "PRS";
}
} else {
var translateTo = "QI";
}
// fire the onHoverOver (use SDX so targets can override default event handler)
if (translateTo) { i2b2.sdx.Master.onHoverOver(translateTo, e, id, this); }
};
i2b2.sdx.TypeControllers.QI.DragDrop.prototype.onDragOut = function(e, id) {
// fire the onHoverOut handler (use SDX so targets can override default event handlers)
// check to see if on-the-fly object type translation is needed
var translateTo = false;
if (Object.isUndefined(this.lastDragOver)) { return false; }
var t = this.lastDragOver.groups;
if (!t['QI']) {
// TRANSLATION NEEDED!
if (t['PRS']) {
translateTo = "PRS";
}
} else {
var translateTo = "QI";
}
// fire the onHoverOver (use SDX so targets can override default event handler)
if (translateTo) { i2b2.sdx.Master.onHoverOut(translateTo, e, id, this); }
};
i2b2.sdx.TypeControllers.QI.DragDrop.prototype.onDragDrop = function(e, id) {
// check to see if on-the-fly object type translation is needed
var translateTo = false;
if (Object.isUndefined(this.lastDragOver)) { return false; }
var t = this.lastDragOver.groups;
if (!t['QI']) {
// TRANSLATION NEEDED!
if (t['PRS']) {
translateTo = "PRS";
}
} else {
var translateTo = "QI";
}
// fire the onHoverOver (use SDX so targets can override default event handler)
if (translateTo) {
i2b2.sdx.Master.onHoverOut(translateTo, e, id, this);
// retreive the concept data from the dragged element
// PERFROM on-the-fly OBJECT TRANSLATION HERE!!
var draggedData;
switch (translateTo) {
case "QI":
// no translation needed
var draggedData = this.yuiTreeNode.data.i2b2_SDX;
// send no so translated info to the drop target handler
i2b2.sdx.Master.ProcessDrop(draggedData, id);
break;
case "PRS":
var draggedData = this.yuiTreeNode.data.i2b2_SDX;
if (draggedData.children.size() == 0) {
// a little explaination about the below code: loading/expanding the
// treeview recursively via asynchronous calls
i2b2.sdx.Master.LoadChildrenFromTreeview(this.yuiTreeNode, (function(){
var cl_tn1 = this.yuiTreeNode;
var cl_id1 = id;
cl_tn1.dynamicLoadComplete = true;
cl_tn1.expand();
for (var i1=0; i1<cl_tn1.children.length; i1++) {
var draggedData = cl_tn1.children[i1].data.i2b2_SDX;
// send translated info to the drop target handler
i2b2.sdx.Master.ProcessDrop(draggedData, cl_id2);
}
}));
} else {
// dump PRS hash as an array of SDX objects
i2b2.sdx.Master.ProcessDrop(draggedData.children.values(), id);
}
break;
}
}
};
// *********************************************************************************
// <BLANK> DROP HANDLER
// !!!! DO NOT EDIT - ATTACH YOUR OWN CUSTOM ROUTINE USING
// !!!! THE i2b2.sdx.Master.setHandlerCustom FUNCTION
// *********************************************************************************
i2b2.sdx.TypeControllers.QI.DropHandler = function(sdxData) {
alert('[QueryInstance DROPPED] You need to create your own custom drop event handler.');
}
console.timeEnd('execute time');
console.groupEnd();
diff --git a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_view_DownloadData.js b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_view_DownloadData.js
index 8ad86d037..883db6cc9 100644
--- a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_view_DownloadData.js
+++ b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_view_DownloadData.js
@@ -1,414 +1,416 @@
/**
* @projectDescription View controller for the download data window (which is a GUI-only component of the CRC module).
* @inherits i2b2.CRC.view
* @namespace i2b2.CRC.view.DownloadData
* @author Bhaswati Ghosh
* @version 1.3
* ----------------------------------------------------------------------------------------
*/
console.group('Load & Execute component file: CRC > view > DownloadData');
console.time('execute time');
// create and save the screen objects
i2b2.CRC.view.downloadData = new i2b2Base_cellViewController(i2b2.CRC, 'downloadData');
i2b2.CRC.view.downloadData.visible = false;
i2b2.CRC.view.downloadData.show = function() {
i2b2.CRC.view.downloadData.visible = true;
$('crcDownloadDataBox').show();
}
i2b2.CRC.view.downloadData.hide = function() {
i2b2.CRC.view.downloadData.visible = false;
$('crcDownloadDataBox').hide();
}
i2b2.CRC.view.downloadData.hideDisplay = function() {
$('infoDownloadStatusData').hide();
}
i2b2.CRC.view.downloadData.showDisplay = function() {
var targs = $('infoDownloadStatusData').parentNode.parentNode.select('DIV.tabBox.active');
// remove all active tabs
targs.each(function(el) { el.removeClassName('active'); });
// set us as active
$('infoDownloadStatusData').parentNode.parentNode.select('DIV.tabBox.tabDownloadData')[0].addClassName('active');
$('infoQueryStatusText').hide();
$('infoQueryStatusChart').hide();
$('infoQueryStatusReport').hide();
$('infoDownloadStatusData').show();
var output = "";
if(typeof i2b2.CRC.view.downloadData.active_qm_id === 'undefined'){
} else {
output = "<div style=\"padding:15px;text-align:center;font-size:16px;\"><img src=\"js-i2b2/cells/plugins/biobankportal/BiobankDatafile/assets/csv_icon.png\" align=\"absmiddle\"/> You can download the de-identified data for this query as an Excel/CSV file. ";
output += "<input onclick=\"loadDownloadData();i2b2.BiobankDatafile.queryAutoDropped(i2b2.CRC.view.downloadData.active_qm_id);\" type=\"button\" class=\"BiobankDatafile-button\" value=\"Proceed to the Download\">";
output += "</div>";
}
$('infoDownloadStatusData').innerHTML = output;
}
i2b2.CRC.view.downloadData.createCSV = function() {
var formattedResObj = i2b2.CRC.ctrlr.currentQueryResults;
var resString = formattedResObj.resultString;
if(resString && resString.length>0)
{
var asInputFragments = i2b2.CRC.view.graphs.parseInputIntoArray(resString,true);
i2b2.CRC.view.downloadData.getFormattedResults(asInputFragments);
i2b2.CRC.view.downloadData.getCSVFromResultsHash();
}
}
allSiteNamesHash = $H(); //This hash keeps all the facility names.
finalOrderdSiteNamesHash = $H(); //In this hash we order the names of all facilities and assign them an index number
resultsHash = $H(); //This hashtable keeps {'breakdown|category',{{'facility Name',{integer value,obfuscated value}}} pairs
errorsHash = $H(); //This hastable keeps {facility name, error message} pairs for all sites that returns error
finalResultsArray = new Array([]); // This is a 2-D array. Keeps data in tabular format where the columns are the sites and rows are the category of results.This array wiil be used to create the CSV table easily.
breakdownHash = $H(); //This hashtable will keep al breakdown categories in lowercase letters. This will help resolve case sensitivity issues for same categories
i2b2.CRC.view.downloadData.getFormattedResults = function(inpArray) {
try{
//Clear all the hashtables
allSiteNamesHash = $H();
resultsHash = $H();
errorsHash = $H();
breakdownHash = $H();
//Populate the facility names hash and results hash tables
inpArray.each(function(item){
var qryName = item[0];
var brkDownCategoryOrError = item[1];
var facilityName = item[2];
var brkDownLabelorErrorMsg = item[3];
var brkDownValue = item[4];
var obfuscatedEntry = item[5];
var obfuscatedVal = item[5];
if(obfuscatedVal)
{
var tempObfuscated = obfuscatedEntry.split(" - ");
if(tempObfuscated && tempObfuscated.length>1)
obfuscatedVal = tempObfuscated[1];
}
var errorEntry = false;
if(brkDownCategoryOrError && brkDownCategoryOrError.indexOf("ERROR") > -1)
errorEntry = true;
if(brkDownCategoryOrError && brkDownCategoryOrError.indexOf("Still Processing Request") > -1)
errorEntry = true;
if(brkDownCategoryOrError && brkDownCategoryOrError.indexOf("Results not available") > -1)
errorEntry = true;
if(facilityName && qryName)
allSiteNamesHash.set(facilityName.trim(),qryName.trim());
//Is this a result entry or error entry
if(errorEntry)
{
if(facilityName && qryName)
errorsHash.set(facilityName.trim(),brkDownLabelorErrorMsg.trim());
}
else //this is a result entry
{
if(brkDownCategoryOrError && brkDownLabelorErrorMsg && obfuscatedVal)
{
var brkDownCategory = brkDownCategoryOrError.trim();
var brkDownLabel = brkDownLabelorErrorMsg.trim();
var keyId = brkDownCategory + "|" + brkDownLabel;
if(resultsHash.get(keyId))
{
var thisKeyDict = resultsHash.get(keyId);
//Save this site entry in proper breakdown hash
thisKeyDict.set(facilityName,{'integerValue' : brkDownValue, 'obfuscated':obfuscatedVal});
}
else
{
//Create a dictionary for the site in the very first entry
var thisKeyDict = $H();
//Create a dictionary for break down category for the very first site in input array
var thisSiteDict = $H();
thisSiteDict.set(facilityName,{'integerValue' : brkDownValue, 'obfuscated':obfuscatedVal});
resultsHash.set(keyId,thisSiteDict);
}
}
}
});
//We have all our required data hashed. Now lets make a tabular format from it.
var maxRowsNum = resultsHash.size();
var maxColsNum = allSiteNamesHash.size();
finalResultsArray = new Array(maxRowsNum+1);
for (var i = 0; i <= maxRowsNum; i++) {
finalResultsArray[i] = new Array(maxColsNum+1);
}
for(var i = 0 ; i<=maxRowsNum ; i++)
{
for(var j = 0 ;j<=maxColsNum; j++)
{
finalResultsArray[i][j]=' ';
}
}
finalOrderdSiteNamesHash = $H();
var count = 1;
allSiteNamesHash.keys().sort().each(function(orderedEntry)
{
finalOrderdSiteNamesHash.set(orderedEntry,count);
count++;
});
//Fill in the first row of the 2-D array with all site names in alphabetic order
finalResultsArray[0][0]='Site names';
finalOrderdSiteNamesHash.each(function(entry)
{
var col = entry.value;
var colEntry = entry.key;
finalResultsArray[0][col]=colEntry;
});
//Fill in the first column of the 2-D array with all the break down categories
var i=0;
var rowIndex = 0;
var temporaryCatgryArr = new Array(maxRowsNum);
resultsHash.keys().sort().each(function(breakdown){
try{
var patCountRow = false;
var lowerCaseBrkDown = breakdown.toLowerCase(); //Resolving case issue for same breakdown fact
if(breakdown.indexOf("Patient Count") > -1)
patCountRow = true;
if(!patCountRow)
{
if(!(breakdownHash.get(lowerCaseBrkDown))){
breakdownHash.set(lowerCaseBrkDown,rowIndex+2);
rowIndex++;
}
}
else
{
//Reserve the 2nd row for patient count data
finalResultsArray[1][0] = breakdown;
breakdownHash.set(lowerCaseBrkDown,1);
}
temporaryCatgryArr[i++] = breakdown;
}
catch(err1)
{
console.error("Error while sorting the breakdown categories : " + err1);
}
});
//Fill in the rest of data in the array
for(var i = 0 ; i < temporaryCatgryArr.length ; i++)
{
try{
var breakdownCat = temporaryCatgryArr[i];
var lowerCaseBrkDown = breakdownCat.toLowerCase();
var rowIndex = breakdownHash.get(lowerCaseBrkDown);
if(rowIndex){
var patCountRow = false;
if(breakdownCat.indexOf("Patient Count") > -1)
patCountRow = true;
if(resultsHash.get(breakdownCat))
{
var thisBrkDnHash = resultsHash.get(breakdownCat);
if(patCountRow) //Fill in the 2nd row with patient count data
finalResultsArray[1][0] = 'All Patients';
else
finalResultsArray[rowIndex][0] = breakdownCat;
thisBrkDnHash.each(function(item){
var siteName = item.key;
var siteIndex = finalOrderdSiteNamesHash.get(siteName);
var integerVal = item.value.integerValue;
finalResultsArray[rowIndex][siteIndex] = integerVal;
});
}
else
{
var err = "Caltegory " + breakdown + " was not found in resullt hashtable";
console.error(err);
}
}
}
catch(err1)
{
console.error("Error while putting together the results table : " + err1);
continue;
}
}
return finalResultsArray;
}
catch(err)
{
console.error(err);
return null;
}
};
i2b2.CRC.view.downloadData.getCSVFromResultsHash = function() {
var numberOfSites = finalOrderdSiteNamesHash.size();
if(numberOfSites>0)
{
var maxRowsNum = breakdownHash.size()+1;
var maxColNumber = numberOfSites+1;
var content = "<img src=\"js-i2b2/cells/CRC/assets/csv.png\"/> <a href='#' onclick='javascript:i2b2.CRC.view.downloadData.exportTableToCSV();return false;'>Download CSV File</a><br/><br/><br/>";
content += "<table id='resultsTable'>";
content += "<tr>"+ //Beginning of Site names row
"<th colspan=\"" + maxColNumber + "\">SHRINE QUERY RESULTS (OBFUSCATED PATIENT COUNTS)</th>"+
"</tr>";
for(var i = 0 ; i < maxRowsNum ; i++)
{
content += "<tr>";
for(var j = 0 ; j < maxColNumber ; j++)
{
var thisRowColItem = finalResultsArray[i][j];
if(thisRowColItem)
{
- if((thisRowColItem.trim().indexOf("10 patients or fewer"))>0)
+ if(i2b2.h.isMinObfuscation(thisRowColItem.trim()){
thisRowColItem = 0;
+ }
+
if(i==0 && j==0)
content += "<td> </td>";
else{
if(thisRowColItem==' ')
content += "<td> </td>";
else
content += "<td>" + thisRowColItem + "</td>";
}
}
else
content += "<td> </td>";
}
content += "</tr>";
}
content += "</table>";
jQuery('#infoDownloadStatusData').append(content);
}
else
{}
}
i2b2.CRC.view.downloadData.exportTableToCSV = function () {
var table = jQuery('#resultsTable');
var filename = 'export.csv';
var rows = table.find('tr:has(td)');
// Temporary delimiter characters unlikely to be typed by keyboard
// This is to avoid accidentally splitting the actual contents
var tmpColDelim = String.fromCharCode(11); // vertical tab character
var tmpRowDelim = String.fromCharCode(0); // null character
// actual delimiter characters for CSV format
var colDelim = '","';
var rowDelim = '"\r\n"';
// Grab text from table into CSV formatted string
var csv = '"' + jQuery(rows).map(function (i, row) {
var row = jQuery(row),
cols = row.find('td');
return jQuery(cols).map(function (j, col) {
var col = jQuery(col),
text = col.text();
if(i==0 && j==0)
text = "SHRINE QUERY RESULTS (OBFUSCATED PATIENT COUNTS)";
else
{
if(elementIsEmpty(col))
text = "";
}
text = text.replace(/"/g, '""'); // escape double quotes
return text.replace(/,/g, '",'); // escape comma inside a field
}).get().join(tmpColDelim);
}).get().join(tmpRowDelim)
.split(tmpRowDelim).join(rowDelim)
.split(tmpColDelim).join(colDelim) + '"';
// Check Browser
var ua = window.navigator.userAgent;
var msie = ua.indexOf("MSIE ");
var trident = ua.indexOf('Trident/');
var edge = ua.indexOf('Edge/');
var browserIsIE = false;
if (msie > 0) { // IE 10 or older
browserIsIE = true;
}
else if (trident > 0) { // IE 11
browserIsIE = true;
}
else if (edge > 0) { // Edge
browserIsIE = true;
}
else
browserIsIE = false;
if(browserIsIE)
{
if (window.navigator.msSaveOrOpenBlob) { // IE 10+
// var fileData = ['\ufeff'+csv];
// blobObject = new Blob(fileData);
var blobObject = new Blob([decodeURIComponent(encodeURI(csv))], {
type: "text/csv;charset=utf-8;"
});
navigator.msSaveOrOpenBlob(blobObject, filename);
return false;
}
else
{
var IEwindow = window.open();
IEwindow.document.write('sep=,\r\n' + csv);
IEwindow.document.close();
var success = IEwindow.document.execCommand('SaveAs', true, filename);
IEwindow.close();
if (!success)
alert("Sorry, your browser does not support this feature");
}
}
else
{
var mylink = document.createElement('a');
var csvData = 'data:application/csv;charset=utf-8,' + encodeURIComponent(csv);
mylink.download = filename;
mylink.href = csvData;
document.body.appendChild(mylink);
mylink.click();
}
}
function elementIsEmpty(td) {
if (td.text == '' || td.text() == ' ' || td.html() == ' ' || td.is(":not(:visible)")) {
return true;
}
return false;
}
// ================================================================================================== //
console.timeEnd('execute time');
console.groupEnd();
\ No newline at end of file
diff --git a/shrine-webclient/src/main/html/js-i2b2/hive/hive_helpers.js b/shrine-webclient/src/main/html/js-i2b2/hive/hive_helpers.js
index df9acbe50..a8731e7b3 100644
--- a/shrine-webclient/src/main/html/js-i2b2/hive/hive_helpers.js
+++ b/shrine-webclient/src/main/html/js-i2b2/hive/hive_helpers.js
@@ -1,807 +1,853 @@
/**
* @projectDescription Various helper functions used by the i2b2 framework and cells.
* @inherits i2b2
* @namespace i2b2
* @author Nick Benik, Griffin Weber MD PhD
* @version 1.3
* ----------------------------------------------------------------------------------------
* updated 9-15-08: RC4 launch [Nick Benik]
*/
console.group('Load & Execute component file: hive > helpers');
console.time('execute time');
if (Object.isUndefined(i2b2.h)) i2b2.h = {};
// ================================================================================================== //
// Hack PrototypeJS to accept multiple parameters for its Object.isUndefined function call
// (utilize a closure to store a protected reference to prototype's original Object.isUndefined object)
i2b2.protoObjhack = (function() {
var origFunction = Object.isUndefined;
var newFunction = function(){
for(var i=0; i<arguments.length; i++) {
if (origFunction(arguments[i])) { return true; }
}
return false;
};
return newFunction;
});
Object.isUndefined = i2b2.protoObjhack();
delete i2b2.protoObjhack;
// ================================================================================================== //
i2b2.h.parseXml = function(xmlString){
var xmlDocRet = false;
var isActiveXSupported = false;
try { new ActiveXObject ("MSXML2.DOMDocument.6.0"); isActiveXSupported = true; } catch (e) { isActiveXSupported = false; }
if (isActiveXSupported) {
//Internet Explorer
xmlDocRet = new ActiveXObject("Microsoft.XMLDOM");
xmlDocRet.async = "false";
xmlDocRet.loadXML(xmlString);
xmlDocRet.setProperty("SelectionLanguage", "XPath");
} else {
//Firefox, Mozilla, Opera, etc.
parser = new DOMParser();
xmlDocRet = parser.parseFromString(xmlString, "text/xml");
}
return xmlDocRet;
};
i2b2.h.XPath = function(xmlDoc, xPath) {
var retArray = [];
if (!xmlDoc) {
console.warn("An invalid XMLDoc was passed to i2b2.h.XPath");
return retArray;
}
try {
if (window.ActiveXObject || "ActiveXObject" in window) {
if((!!navigator.userAgent.match(/Trident.*rv\:11\./)) && (typeof xmlDoc.selectNodes == "undefined")) { // IE11 handling
var doc = new ActiveXObject('Microsoft.XMLDOM');
doc.loadXML(new XMLSerializer().serializeToString(xmlDoc));
xmlDoc = doc;
}
// Microsoft's XPath implementation
// HACK: setProperty attempts execution when placed in IF statements' test condition, forced to use try-catch
try {
xmlDoc.setProperty("SelectionLanguage", "XPath");
} catch(e) {
try {
xmlDoc.ownerDocument.setProperty("SelectionLanguage", "XPath");
} catch(e) {}
}
retArray = xmlDoc.selectNodes(xPath);
}
else if (document.implementation && document.implementation.createDocument) {
// W3C XPath implementation (Internet standard)
var ownerDoc = xmlDoc.ownerDocument;
if (!ownerDoc) {ownerDoc = xmlDoc; }
var nodes = ownerDoc.evaluate(xPath, xmlDoc, null, XPathResult.ANY_TYPE, null);
var rec = nodes.iterateNext();
while (rec) {
retArray.push(rec);
rec = nodes.iterateNext();
}
}
} catch (e) {
console.error("An error occurred while trying to perform XPath query.");
console.dir(e);
}
return retArray;
};
i2b2.h.getXNodeVal = function(xmlElement, nodeName, includeChildren) {
var gotten = i2b2.h.XPath(xmlElement, "descendant-or-self::"+nodeName+"/text()");
var final = "";
if (gotten.length > 0) {
if (includeChildren == true || includeChildren == true) {
for (var i=0; i<gotten.length; i++) {
final += gotten[i].nodeValue;
}
} else {
final = gotten[0].nodeValue;
}
} else {
final = undefined;
}
return final;
}
i2b2.h.GenerateAlphaNumId = function(ReqIdLength) {
var IdLen = 0;
var retId = "";
while (IdLen <= ReqIdLength) {
IdLen++;
switch(Math.floor(Math.random() * 3)) {
case 0:
// add a number
retId += Math.floor(Math.random() * 10).toString();
break;
case 1:
// upper case letter
retId += String.fromCharCode(Math.floor(Math.random() * 26)+65);
break;
case 2:
// lower case letter
retId += String.fromCharCode(Math.floor(Math.random() * 26)+97);
break;
}
}
return retId;
};
i2b2.h.GenerateISO8601DateTime = function(inDate) {
if (!inDate) { inDate = new Date(); }
var year = inDate.getYear();
if (year < 2000) year = year + 1900;
var month = inDate.getMonth() + 1;
var day = inDate.getDate();
var hour = inDate.getHours();
var hourUTC = inDate.getUTCHours();
var diff = hour - hourUTC;
var hourdifference = Math.abs(diff);
var minute = inDate.getMinutes();
var minuteUTC = inDate.getUTCMinutes();
var minutedifference;
var second = inDate.getSeconds();
var timezone;
if (minute != minuteUTC && minuteUTC < 30 && diff < 0) { hourdifference--; }
if (minute != minuteUTC && minuteUTC > 30 && diff > 0) { hourdifference--; }
if (minute != minuteUTC) {
minutedifference = ":30";
} else {
minutedifference = ":00";
}
if (hourdifference < 10) {
timezone = "0" + hourdifference + minutedifference;
} else {
timezone = "" + hourdifference + minutedifference;
}
if (diff < 0) {
timezone = "-" + timezone;
} else {
timezone = "+" + timezone;
}
if (month <= 9) month = "0" + month;
if (day <= 9) day = "0" + day;
if (hour <= 9) hour = "0" + hour;
if (minute <= 9) minute = "0" + minute;
if (second <= 9) second = "0" + second;
return (year + "-" + month + "-" + day + "T" + hour + ":" + minute + ":" + second + timezone);
};
i2b2.h.Escape = function(inStrValue) {
if (typeof inStrValue == "number") {
var t = inStrValue.toString();
} else {
var t = new String(inStrValue);
}
t = t.replace(/&/g, "&");
t = t.replace(/</g, "<");
t = t.replace(/>/g, ">");
return t;
};
i2b2.h.Unescape = function(inStrValue) {
var t = new String(inStrValue);
t = t.replace(/>/g, ">");
t = t.replace(/</g, "<");
t = t.replace(/&/g, "&");
return t;
};
i2b2.h.EscapeTemplateVars = function(refTemplateVals, arryIgnoreVars) {
for (var vname in refTemplateVals) {
var ignore = false;
for (var i=0; i<arryIgnoreVars.length; i++) {
if (vname == arryIgnoreVars[i]) {
ignore = true;
break;
}
}
if (!ignore) {
// escaping value
refTemplateVals[vname] = this.Escape(refTemplateVals[vname]);
}
}
};
i2b2.h.LoadingMask = {
show: function() {
var sz = document.viewport.getDimensions();
var w = window.innerWidth || (window.document.documentElement.clientWidth || window.document.body.clientWidth);
var h = window.innerHeight || (window.document.documentElement.clientHeight || window.document.body.clientHeight);
if (w < 840) {w = 840;}
if (h < 517) {h = 517;}
var mn = $('topMask');
mn.style.width=w-10;
mn.style.height=h-10;
mn.innerHTML = "<TABLE height='100%' width='100%'><TR><TD align='center' valign='center'><BR/><H1><FONT size='12' color='white'>LOADING</FONT></H1></TD></TR></TABLE>";
mn.zindex = 50000;
// mn.style.cursor = 'wait';
mn.show();
},
hide: function() {
// hide the loading mask
var mn = $('topMask');
mn.innerHTML='';
mn.hide();
}
};
// created this object to allow the joining of forked execution paths (Waiting for Multiple AJAX calls)
i2b2.h.JoiningMutex = {
_contexts: {},
_contextGenID: 0,
_createContextProxy: function(contextRef) {
// create a proxy object (via closure) to encapsulate data
// and route actions to the JoinMutex singleton
var cl_JoinMutextRef = contextRef;
function JoiningMutexContextProxy() {
this._JoiningMutexContext = cl_JoinMutextRef;
this._alreadyRun = false;
this.name = function() { return this._JoiningMutexContext.name; };
this.openThreads = function() { return this._JoiningMutexContext.openThreads; };
this.executeOnce = function() { return this._JoiningMutexContext.executeOnce; };
this.executionCount = function() { return this._JoiningMutexContext.executionCount; };
this.isActive = function() { return this._JoiningMutexContext.active; };
this.ThreadFinished = function() {
if (!this._JoiningMutexContext.active) {
return {error: true, errorObj: undefined, errorMsg: 'JoiningMutexProxy.ThreadFinished() failed because the giving context is no longer active'};
}
if (this._JoiningMutexContext._alreadyRun) {
return {error: true, errorObj: undefined, errorMsg: 'JoiningMutexProxy.ThreadFinished() failed because the MutexProxy has already been run'};
}
if (this._JoiningMutexContext.openThreads > 0) {
this._JoiningMutexContext.openThreads--;
this._alreadyRun = true;
if (this._JoiningMutexContext.openThreads == 0) {
// all threads finished
if (this._JoiningMutexContext.executeOnce) {
// this is going to be our only run of the callback function
this._JoiningMutexContext.active = false;
}
this._JoiningMutexContext.executionCount++;
this._JoiningMutexContext.callbackFinished();
return true;
} else {
// everything is OK but there are still outstanding threads to finish
return false;
}
} else {
return {error: true, errorObj: undefined, errorMsg: 'JoiningMutexProxy.ThreadFinished() failed because there are no outstanding thread executions'};
}
};
}
return new JoiningMutexContextProxy;
},
contextCreate: function(sContextName, fZeroRunFunction, bSingleRun) {
// make sure context is new
var validName = sContextName;
try {
if (!validName) {
this._contextGenID++;
validName = "AUTOGEN-"+this._contextGenID;
}
if (this._contexts[validName]) {
return {error: true, errorObj: undefined, errorMsg: 'JoiningMutex.contextCreate() failed because the giving context name already exists'};
}
// verify that the name can be used as an object identifier (with throw an error if invalid)
this._contexts[validName] = true;
delete this._contexts[validName];
} catch(e) {
return {error: true, errorObj: e, errorMsg: 'an error occurred within JoiningMutex.contextCreate()'};
}
// create new context object
function JoiningMutexContext(inName, inFinishFunction, inSingleExecution) {
this.name = inName;
this.callbackFinished = inFinishFunction;
this.openThreads = 0;
this.executeOnce = inSingleExecution;
this.executionCount = 0;
this.active = true;
}
var bSingleRun = Boolean.parseTo(bSingleRun);
this._contexts[validName] = new JoiningMutexContext(validName, fZeroRunFunction, bSingleRun);
// add ourselves to the thread count
var cl_JoinMutextRef = this._contexts[validName];
cl_JoinMutextRef.openThreads++;
return this._createContextProxy(cl_JoinMutextRef);
},
contextJoin: function(sContextName) {
// make sure context already exists
var validName = sContextName;
if (!this._contexts[validName]) {
return {error: true, errorObj: undefined, errorMsg: 'JoiningMutex.contextCreate() failed because the context name does not exist'};
}
var cl_JoinMutextRef = this._contexts[validName];
// Add this thread to the count
cl_JoinMutextRef.openThreads++;
return this._createContextProxy(cl_JoinMutextRef);
},
contextJoinCreate: function(sContextName, fZeroRunFunction, bSingleRun) {
// Join context or create it if it exists
var ctx = false;
if (!sContextName || !this._contexts[sContextName]) {
ctx = this.contextCreate.call(this, sContextName, fZeroRunFunction, bSingleRun);
} else {
ctx = this.contextJoin.call(this, sContextName);
}
return ctx;
},
contextDestroy: function(sContextName) {
if (!sContextName || !this._contexts[sContextName]) {
return false;
} else {
// Garbage collection will not execute until all
// the JoiningMutexContextProxy are deleted so
// invalidate the context as well as delete it!
this._contexts[sContextName].active = false;
this._contexts[sContextName].callbackFinished = function() { return null; };
delete this._contexts[sContextName];
return true;
}
}
};
// this function will hide/show elements tagged with the "debug" classname
i2b2.h.debugElements = function(rootElement) {
var el = $(rootElement);
if (!el) { return; }
var tns = el.select('.debug');
var sflg = i2b2.h.inDebugMode();
for (var i=0; i<tns.length; i++) {
if (sflg) {
tns[i].show();
} else {
tns[i].hide();
}
}
}
i2b2.events.afterLogin.subscribe(
(function(en,co,a) {
// remove debugging functionality from GUI
i2b2.h.debugElements(document.documentElement);
// remove the analysis link if configuration tells us to
if (!i2b2.h.allowAnalysis()) { $('allowAnalysis').hide(); }
})
);
i2b2.h.isBadObjPath = function(sObjectHierarchy) {
try {
var t = eval("("+sObjectHierarchy+")");
return Object.isUndefined(t);
} catch (e) {
return true;
}
}
// Extend JS Objects
// ================================================================================================== //
String.prototype.repeat = function(l){
return new Array(l+1).join(this);
};
// ================================================================================================== //
function padNumber(num, req_digits) {
num = parseInt(num, 10)+"";
var pad = req_digits - num.length;
if (pad > 0 ) num = "0".repeat(pad)+num;
return num;
}
// wrap YUI functions into the JS Object constructor to augment Protype-JS functions
// ================================================================================================== //
Object.isObject = function(testObj) { return YAHOO.lang.isObject(testObj); }
Object.isNull = function(testObj) { return YAHOO.lang.isNull(testObj); }
Object.isBoolean = function(testObj) { return YAHOO.lang.isBoolean(testObj); }
Boolean.parseTo = function(inputValue) {
if (typeof inputValue == "string") {
return /\btrue/i.match(inputValue);
}
return (inputValue==true);
}
// This is a special closure-based function to return a unique ID every time called.
// The closure counter gets wrapped into a private "bubble" within the JsVM that
// is not accessable from other calls... Let the scope-chain bending begin!
// ================================================================================================== //
i2b2.GUID = (function() {
var closure_Counter = 0 ;
function closure_nextID() {
var prevID = closure_Counter;
closure_Counter++;
if (prevID > closure_Counter) console.error("[i2b2.GUID function's internal counter encountered an overflow!!!]");
return closure_Counter;
}
return (function() { return closure_nextID(); });
})();
// Global helper functions
// ================================================================================================== //
function parseBoolean(inputStr) { return /\btrue/i.match(inputStr); }
// function needed to perform processing
// only on objects that match a specific type
// ================================================================================================== //
Object.getClass = getObjectClass;
function getObjectClass(obj) {
if (obj && obj.constructor && obj.constructor.toString) {
var arr = obj.constructor.toString().match(/function\s*(\w+)/);
if (arr && arr.length == 2) { return arr[1]; }
}
return undefined;
}
// Extend the YAHOO.widget.TreeView object
// ================================================================================================== //
YAHOO.widget.TreeView.findTreeByChildDiv = function(divChild) {
var parentNode;
var isDone = false;
var tdiv = $(divChild);
if (!tdiv) { return undefined; }
do {
if (tdiv.id) {
var tree = this.getTree(tdiv.id);
if (tree) { isDone = true; }
}
if (tdiv.parentNode) {
tdiv = tdiv.parentNode;
} else {
isDone = true;
}
} while (!isDone)
return tree;
}
YAHOO.widget.TreeView.getNode_orig = YAHOO.widget.TreeView.getNode;
YAHOO.widget.TreeView.getNode = function(treeId, nodeIndex) {
// This is an enhanced version which overrides the default function within the
// YUI library, This is needed to handle HTML <-> data structure mismatches
// which occurs because we are separating and redisplaying our Root nodes
// in different treesview controller instances. This function falls back on
// the original function calls which should prevent any problems with future versions
var retNode = YAHOO.widget.TreeView.getNode_orig(treeId, nodeIndex);
if (!retNode) {
// start special processing to find our node in the list of other tree controllers
for (var ntn in YAHOO.widget.TreeView.trees) {
var nexttree = YAHOO.widget.TreeView.trees[ntn];
if (nexttree.toString) {
var n = nexttree.toString();
var s = n.split(' ',2);
if (s[0] == "TreeView") {
retNode = YAHOO.widget.TreeView.getNode_orig(s[1], nodeIndex);
if (retNode) { break; }
}
}
}
}
return retNode;
}
// ================================================================================================== //
YAHOO.widget.Node.prototype.refresh_orig = YAHOO.widget.Node.prototype.refresh;
YAHOO.widget.Node.prototype.refresh = function() {
// Intercept call to default node.refresh() and extend it to fire original call
// then fire the YAHOO.util.DDM.reattachHandlers() function to reattach
// drag & drop handlers that are used by the trees.
var ret = this.refresh_orig.call(this);
YAHOO.util.DDM.reattachHandlers();
console.warn("reattach DD handlers");
return ret;
}
// ================================================================================================== //
YAHOO.widget.TreeView.attachRootNodeToTree = function(obRootNode, objTree) {
if (obRootNode == objTree.root) return true;
// this is our recursive set tree function
var recursiveSetTree = function(oTree, oNode, recFunc) {
if (oNode.tree) { oNode.tree = oTree; }
try {
for (var i=0; i<oNode.children.length; i++) {
recFunc(oTree, oNode.children[i], recFunc);
}
} catch(e) {}
}
var recursiveTreePopulate = function(oTreeArrayNode, oNode, recFunc) {
if (oNode.index) { oTreeArrayNode[oNode.index] = oNode; }
try {
for (var i=0; i<oNode.children.length; i++) {
recFunc(oTreeArrayNode, oNode.children[i], recFunc);
}
} catch(e) {}
}
var recursiveApplyParent = function(oNode, recFunc) {
try {
for (var i=0; i<oNode.children.length; i++) {
oNode.children[i].applyParent(oNode);
recFunc(oNode.children[i], recFunc);
}
} catch(e) {}
}
objTree._nodes.clear();
// attach the new root node to the tree
objTree.root = obRootNode;
obRootNode.tree = objTree;
for (var i=0; i<obRootNode.children.length; i++) {
obRootNode.children[i].applyParent(obRootNode);
}
//recursiveSetTree(objTree, objTree.root, recursiveSetTree);
recursiveTreePopulate(objTree._nodes, objTree.root, recursiveTreePopulate);
// reattach the dynamic load event if it was lost
objTree.setDynamicLoad(i2b2.CRC.ctrlr.QT._loadTreeDataForNode,1);
return true;
}
YAHOO.widget.Node.prototype.isDescendant = function(srchNode) {
// is the current node a descendant of srchNode? Used to prevent parents being dragged into its child nodes.
var thisNode = this;
if (!srchNode) { return undefined; }
while (thisNode.parent) {
if (thisNode == srchNode) {
return true;
}
thisNode = thisNode.parent;
}
return false;
}
// this function is a very clever hack to reattach all YUI drag & drop handlers which have
// gotten detached and have (newer copies of) their elements in the visible DOM tree
YAHOO.util.DDM.reattachHandlers = function() {
for (var grps in YAHOO.util.DDM.ids) {
// interaction groups
for (var el in YAHOO.util.DDM.ids[grps]) {
try {
var t = YAHOO.util.DDM.ids[grps][el];
// copy the info
var ddId = t.id;
var ddGrps = Object.clone(t.groups);
var ddCfg = Object.clone(t.config);
var ddTargeted = t.isTarget;
var fEl = $(el);
if (!fEl) {
if (t.available) {
// remove DD for non-existent HTML elements and
// only after the DD has been initialized
t._domRef = null;
t.unreg();
}
} else {
// reattach
if (t._domRef != fEl) {
t._domRef = fEl;
t.init(ddId);
t.groups = Object.clone(ddGrps);
t.isTarget = ddTargeted;
}
}
} catch(e) { console.warn("Error while reattaching DD handlers: "+e.message); }
}
}
}
// ================================================================================================== //
// Patch a bug in the YUI overlay subsystem which ignores/destroys zIndex parameter given
// to modal forms during initial creation. TODO: REMOVE THIS WHEN YAHOO FIXES THIS BUG!
i2b2.bugfix1 = function () {};
i2b2.bugfix1.prototype.bringToTop = function() {
var Dom = YAHOO.util.Dom;
var Overlay = YAHOO.widget.Overlay;
var Lang = YAHOO.lang;
var aOverlays = [],
oElement = this.element;
function compareZIndexDesc(p_oOverlay1, p_oOverlay2) {
var sZIndex1 = Dom.getStyle(p_oOverlay1, "zIndex"),
sZIndex2 = Dom.getStyle(p_oOverlay2, "zIndex"),
nZIndex1 = (!sZIndex1 || isNaN(sZIndex1)) ? 0 : parseInt(sZIndex1, 10),
nZIndex2 = (!sZIndex2 || isNaN(sZIndex2)) ? 0 : parseInt(sZIndex2, 10);
if (nZIndex1 > nZIndex2) {
return -1;
} else if (nZIndex1 < nZIndex2) {
return 1;
} else {
return 0;
}
}
function isOverlayElement(p_oElement) {
var oOverlay = Dom.hasClass(p_oElement, Overlay.CSS_OVERLAY),
Panel = YAHOO.widget.Panel;
if (oOverlay && !Dom.isAncestor(oElement, oOverlay)) {
if (Panel && Dom.hasClass(p_oElement, Panel.CSS_PANEL)) {
aOverlays[aOverlays.length] = p_oElement.parentNode;
} else {
aOverlays[aOverlays.length] = p_oElement;
}
}
}
Dom.getElementsBy(isOverlayElement, "DIV", document.body);
aOverlays.sort(compareZIndexDesc);
var oTopOverlay = aOverlays[0],
nTopZIndex;
if (oTopOverlay) {
nTopZIndex = Dom.getStyle(oTopOverlay, "zIndex");
if (!isNaN(nTopZIndex)) {
var bRequiresBump = false;
if (oTopOverlay != oElement) {
bRequiresBump = true;
} else if (aOverlays.length > 1) {
var nNextZIndex = Dom.getStyle(aOverlays[1], "zIndex");
// Don't rely on DOM order to stack if 2 overlays are at the same zindex.
if (!isNaN(nNextZIndex) && (nTopZIndex == nNextZIndex)) {
bRequiresBump = true;
}
}
// <PATCH: make sure the zIndex is >= any zIndex given in the initial creation settings>
if (!Lang.isUndefined(this.cfg.config.zindex)) {
if (parseInt(this.cfg.config.zindex.value, 10) >= parseInt(nTopZIndex,10)) {
nTopZIndex = this.cfg.config.zindex.value;
bRequiresBump = true;
}
}
// </PATCH: make sure the zIndex is >= any zIndex given in the initial creation settings>
if (bRequiresBump) {
this.cfg.setProperty("zindex", (parseInt(nTopZIndex, 10) + 2));
}
}
}
};
i2b2.bugfix2 = function() {
YAHOO.lang.augmentProto(YAHOO.widget.Overlay, i2b2.bugfix1, true);
delete i2b2.bugfix1;
delete i2b2.bugfix2;
};
setTimeout('i2b2.bugfix2()',200);
// AJAX/XML
// ================================================================================================== //
function getHtmlText(node) {
if (node.innerText) { // IE;
return node.innerText;
} else {
if (node.textContent) {
return node.textContent;
}
}
console.error('getHtmlText(): no innerText or textContent.');
}
// ================================================================================================== //
function showXML(c,r,t) {
switch (t) {
case "Request":
var s = i2b2[c].view[r]['query'+t];
if (s) {
s = s.replace(new RegExp('<','g'),'<');
s = s.replace(new RegExp('>','g'),'>');
} else {
s = '';
}
i2b2.hive.MsgSniffer.showSingleMsgRequest(s);
break;
case "Response":
var s = i2b2[c].view[r]['query'+t];
if (s) {
s = s.replace(new RegExp('<','g'),'<');
s = s.replace(new RegExp('>','g'),'>');
} else {
s = '';
}
i2b2.hive.MsgSniffer.showSingleMsgResponse(s);
break;
case "Stack":
if (c=="WORK" && r=="main") {
i2b2.hive.MsgSniffer.showStack("Workplace", ["WORK:Workplace"], ["WORK"]);
return;
}
if (c=="ONT" && r=="nav") {
i2b2.hive.MsgSniffer.showStack("Ontology Navigation", ["ONT:SDX:Concept","ONT:generalView"], ["ONT"]);
return;
}
if (c=="ONT" && r=="find") {
i2b2.hive.MsgSniffer.showStack("Ontology Search", ["ONT:SDX:Concept","ONT:FindBy","ONT:generalView"], ["ONT"]);
return;
}
if (c=="CRC" && r=="history") {
i2b2.hive.MsgSniffer.showStack("History", ["CRC:History", "CRC:SDX:QueryMaster", "CRC:SDX:QueryInstance", "CRC:SDX:PatientRecordSet"], ["CRC"]);
return;
}
if (c=="CRC" && r=="QT") {
i2b2.hive.MsgSniffer.showStack("Query Tool", ["CRC:QueryTool"]);
return;
}
if (c=="PLUGINMGR" && r=="PlugView") {
i2b2.hive.MsgSniffer.show();
return;
}
if (c=="PM" && r=="Admin") {
i2b2.hive.MsgSniffer.showStack("PM Admin", ["PM:Admin"]);
return;
}
alert("captured "+c+" :: "+r+" :: "+t);
break;
}
}
// ================================================================================================== //
i2b2.h.Xml2String = function(x) {
var xmlSerializer;
try {
xmlSerializer = new XMLSerializer();
var s = xmlSerializer.serializeToString(x);
if (s) {
return s;
} else {
return 'Browser not supported yet. (Try Firefox)';
}
}
catch (e) {
return x.xml;
}
}
// helper function to build a sniffer package for Cell Communications events
i2b2.h.BuildSniffPack = function(cellName, cellFuncName, results, signalOrigin) {
//i2b2.h.BuildSniffPack = function(viewName, cellName, cellFuncName, results) {
function i2b2_CellCommPackage() {}
var sniffPackage = new i2b2_CellCommPackage();
// if (undefined == viewName) {
// sniffPackage.ViewName = viewName;
// }
sniffPackage.CellName = cellName;
sniffPackage.CellAction = cellFuncName;
sniffPackage.CommDetails = results;
sniffPackage.SignalOrigin = signalOrigin;
return sniffPackage;
}
+i2b2.h.getFormattedResult = getFormattedResult;
+i2b2.h.getMinResultText = getMinResultText;
+i2b2.h.isMinObfuscation = isMinObfuscation;
+/**
+ * Method for creating obfuscation text
+ * @param: rawResult - If null or undefined, will default to 0.
+ */
+function getFormattedResult(rawResult) {
+
+ var resultTitle = ' - ';
+ var obfuscationSetting = i2b2.hive.cfg.obfuscation;
+ var isException = i2b2.PM.model.isObfuscated === false;
+ rawResult = rawResult || 0;
+
+ if (isException) {
+ return resultTitle += rawResult + ' ' + i2b2.hive.cfg.resultName;
+ }
+
+ resultTitle += (rawResult >= obfuscationSetting) ? getResultText(rawResult) : getMinResultText();
+
+ return resultTitle;
+}
+
+/**
+ * Method for getting default result text if result is less than minimum obfuscation value.
+ */
+function getMinResultText() {
+ i2b2.hive.cfg.obfuscation + ' ' + i2b2.hive.cfg.resultName + ' or fewer';
+}
+
+/**
+ * True if title represents a result value that is less than the obfuscation minimum value.
+ * @param: title of a node.
+ */
+function isMinObfuscation (title) {
+ return !!title.indexOf(getMinResultText()) > 0;
+}
+
+/**
+ * Format raw query count as texxt
+ * @param: Raw query count.
+ */
+function getResultText(rawResult) {
+ var text = rawResult + ' +-' + i2b2.hive.cfg.obfuscation + ' ' + i2b2.hive.cfg.resultName;
+ return text;
+}
console.timeEnd('execute time');
console.groupEnd();