diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.factory.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.factory.js
similarity index 99%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.factory.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.factory.js
index 801d12466..da260beaa 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.factory.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.factory.js
@@ -1,44 +1,43 @@
(function () {
angular.module('shrine.steward.statistics')
.factory('OntologyTerm', OntologyTermFactory);
-
function OntologyTermFactory() {
return OntologyTerm;
}
function OntologyTerm(key) {
this.key = key;
this.children = {};
this.queries = {};
this.queryCount = 0;
}
/* static */
OntologyTerm.prototype.maxTermUsedCount = 0;
OntologyTerm.prototype.addQuery = function (queryId, queryData) {
if (!this.queries[queryId]) {
this.queries[queryId] = queryData;
this.queryCount = this.getQueries().length;
if (this.queryCount > OntologyTerm.prototype.maxTermUsedCount) {
OntologyTerm.prototype.maxTermUsedCount = this.queryCount;
}
}
};
OntologyTerm.prototype.getQueries = function () {
return Object.keys(this.queries);
};
OntologyTerm.prototype.getQueryCount = function () {
return this.queryCount;
};
OntologyTerm.prototype.hasChildren = function () {
return !!(Object.keys(this.children).length > 0);
};
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.service.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.service.js
similarity index 98%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.service.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.service.js
index 6ce59e7f1..42027c48e 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.service.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.service.js
@@ -1,156 +1,157 @@
(function () {
'use strict';
angular.module('shrine.steward.statistics')
.service('OntologyTermService', OntologyTermService);
OntologyTermService.$inject = ['OntologyTerm'];
function OntologyTermService(OntologyTerm) {
return {
buildOntology: buildOntology,
getMax: function () {
var maxTermUsedCount = OntologyTerm.prototype.maxTermUsedCount;
+ OntologyTerm.prototype.maxTermUsedCount = 0;
return maxTermUsedCount;
- },
+ }
};
/**
* Build Ontology from array of Query Records.
*/
function buildOntology(queryRecords, topicId) {
var ln = queryRecords.length;
var queryCount = 0;
var ontology = new OntologyTerm('SHRINE');
var topics = {};
//ontology.queryCount = ln;
for (var i = 0; i < ln; i++) {
var record = queryRecords[i];
if (topicId === undefined || (record.topic !== undefined && topicId === record.topic.id)) {
var str = record.queryContents;
ontology = traverse(str.queryDefinition.expr, record.externalId, ontology);
queryCount++;
if (!topics[record.topic.id]) {
topics[record.topic.id] = record.topic;
}
appendTopicIfUnique(record.topic, topics);
}
}
ontology.topics = formatTopicsToArray(topics);
ontology.queryCount = queryCount;
return ontology;
}
function formatTopicsToArray(topicObject) {
var topicArray = [];
var keys = Object.keys(topicObject);
Object.keys(topicObject)
.forEach(function (key) { topicArray.push(topicObject[key]); });
return topicArray;
}
function appendTopicIfUnique(topic, topics) {
var id = topic.id;
if (!topics[id]) {
topics[id] = topic;
}
return topics;
}
/**
* Recursive Traversal of ontological hierarchy.
*/
function traverse(obj, queryId, terms) {
var keys = Object.keys(obj);
// -- nothing to search, we're done. -- //
if (typeof (obj) !== 'object' || !keys.length) {
return terms;
}
// -- traverse each object key, parse all the terms. -- //
for (var i = 0; i < keys.length; i++) {
var key = keys[i];
if (key === 'term') {
if (!Array.isArray(obj.term)) {
processKey(terms, obj.term, queryId);
}
else {
// -- iterate through the termlist -- //
var termList = obj.term;
for (var j = 0; j < termList.length; j++) {
var term = termList[j];
processKey(terms, term, queryId);
}
}
}
else {
traverse(obj[key], queryId, terms);
}
}
return terms;
}
/**
* Parse out a term hierarchy of a term key.
*/
function processKey(terms, key, queryId) {
var prunedKey = key.split('\\\\SHRINE\\SHRINE')[1];
var ontologyList = prunedKey.split('\\').slice(1);
ontologyList = ontologyList.slice(0, ontologyList.length - 1);
var currentLevel = terms;
for (var i = 0; i < ontologyList.length; i++) {
var term = ontologyList[i];
processTerm(currentLevel, term, queryId);
currentLevel = currentLevel.children[term];
}
}
/**
* If a term is already a child of the parent, then add it's query to the list of queries for that term.
* Otherwise, create a new term object and add it to the parent.
*/
function processTerm(terms, key, queryId) {
var term;
if (!terms.children[key]) {
term = addTerm(terms, key, queryId);
}
else {
term = terms.children[key];
term.addQuery(queryId, queryId);
}
}
/**
* Add an instance of a query term to it's parent in the ontolgy.
*/
function addTerm(terms, key, queryId) {
var term = getNewTerm(key);
term.addQuery(queryId, queryId);
terms.children[key] = term;
return term;
}
/**
* Return Instance of Ontology Term.
*/
function getNewTerm(name) {
return new OntologyTerm(name);
}
}
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.service.spec.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.service.spec.js
similarity index 99%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.service.spec.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.service.spec.js
index 1b66461c6..ea6a6384f 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/ontology-term.service.spec.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/ontology-term.service.spec.js
@@ -1,36 +1,37 @@
(function () {
'use strict';
describe('statistics model tests', OntologyTermServiceSpec);
function OntologyTermServiceSpec() {
var ontologyTermService, OntologyTerm;
function setup() {
module('shrine.steward.statistics');
inject(function (_OntologyTerm_, _OntologyTermService_) {
ontologyTermService = _OntologyTermService_;
OntologyTerm = _OntologyTerm_;
});
}
beforeEach(setup);
it('Parse Query History', function () {
var queryHistory = getQueryData();
var ontologyTree = ontologyTermService.buildOntology(queryHistory.queryRecords);
expect(ontologyTree.key).toBe('SHRINE');
- expect(ontologyTermService.getMax()).toEqual(OntologyTerm.prototype.maxTermUsedCount);
+ var maxTermUsedCount = OntologyTerm.prototype.maxTermUsedCount;
+ expect(ontologyTermService.getMax()).toEqual(maxTermUsedCount);
expect(ontologyTree.children).toBeDefined();
});
}
/**
* Simulate call to retrieve query history.
*/
function getQueryData() {
return { "totalCount": 144, "skipped": 0, "queryRecords": [{ "name": "(042)-R3: B-Male@16:00:47", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 2648707654509368797, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587248893, "stewardId": 400, "queryContents": { "queryDefinition": { "expr": { "and": { "term": "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\", "or": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Infectious and parasitic diseases (001-139.99)\\Human immunodeficiency virus [hiv] infection (042-042.99)\\(042) Human immunodeficiency virus [HIV] disease\\", "\\\\SHRINE\\SHRINE\\medications\\RE000\\RE500\\RE515\\161\\"] } } }, "name": "(042)-R3: B-Male@16:00:47" } } }, { "name": "Aceta-R3: B-Male@16:01:13", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 3600437163069893043, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587275020, "stewardId": 401, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\medications\\RE000\\RE500\\RE515\\161\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\"] } }, "name": "Aceta-R3: B-Male@16:01:13" } } }, { "name": "(042)-R3: B-Male@16:02:11", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 6263453912784003804, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587332322, "stewardId": 402, "queryContents": { "queryDefinition": { "expr": { "and": { "term": "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\", "or": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Infectious and parasitic diseases (001-139.99)\\Human immunodeficiency virus [hiv] infection (042-042.99)\\(042) Human immunodeficiency virus [HIV] disease\\", "\\\\SHRINE\\SHRINE\\medications\\RE000\\RE599\\1886\\"] } } }, "name": "(042)-R3: B-Male@16:02:11" } } }, { "name": "Caffe-R3: B-Male@16:02:29", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 4379134945899344034, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587350694, "stewardId": 403, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\medications\\RE000\\RE599\\1886\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\"] } }, "name": "Caffe-R3: B-Male@16:02:29" } } }, { "name": "(042)-R3: B-Male@16:02:53", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 8443382336139319396, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587374744, "stewardId": 404, "queryContents": { "queryDefinition": { "expr": { "and": { "term": "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\", "or": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Infectious and parasitic diseases (001-139.99)\\Human immunodeficiency virus [hiv] infection (042-042.99)\\(042) Human immunodeficiency virus [HIV] disease\\", "\\\\SHRINE\\SHRINE\\medications\\RE000\\RE599\\1191\\"] } } }, "name": "(042)-R3: B-Male@16:02:53" } } }, { "name": "Aspir-R3: B-Male@16:03:07", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 6855029845924574963, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587388451, "stewardId": 405, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\medications\\RE000\\RE599\\1191\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\"] } }, "name": "Aspir-R3: B-Male@16:03:07" } } }, { "name": "(042)-R3: B-Male@16:03:39", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 898006392648873638, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587420556, "stewardId": 406, "queryContents": { "queryDefinition": { "expr": { "and": { "term": "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\", "or": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Infectious and parasitic diseases (001-139.99)\\Human immunodeficiency virus [hiv] infection (042-042.99)\\(042) Human immunodeficiency virus [HIV] disease\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\"] } } }, "name": "(042)-R3: B-Male@16:03:39" } } }, { "name": "Acarb-R3: B-Male@16:03:47", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 5208850828805054186, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587429005, "stewardId": 407, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\"] } }, "name": "Acarb-R3: B-Male@16:03:47" } } }, { "name": "(042)-R3: B-Male@16:04:09", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 7425009544481708263, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587450208, "stewardId": 408, "queryContents": { "queryDefinition": { "expr": { "and": { "term": "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\", "or": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Infectious and parasitic diseases (001-139.99)\\Human immunodeficiency virus [hiv] infection (042-042.99)\\(042) Human immunodeficiency virus [HIV] disease\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\30009\\"] } } }, "name": "(042)-R3: B-Male@16:04:09" } } }, { "name": "migli-R3: B-Male@16:04:18", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 1750973852506559058, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587459931, "stewardId": 409, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\medications\\zzzz\\30009\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\"] } }, "name": "migli-R3: B-Male@16:04:18" } } }, { "name": "(042)-R3: B-Male@16:04:47", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 4360123140814019270, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587488444, "stewardId": 410, "queryContents": { "queryDefinition": { "expr": { "and": { "term": "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\", "or": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Infectious and parasitic diseases (001-139.99)\\Human immunodeficiency virus [hiv] infection (042-042.99)\\(042) Human immunodeficiency virus [HIV] disease\\", "\\\\SHRINE\\SHRINE\\medications\\HS000\\HS500\\HS502\\6809\\"] } } }, "name": "(042)-R3: B-Male@16:04:47" } } }, { "name": "Metfo-R3: B-Male@16:04:54", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health impact of dietary related chronic diseases on HIV positive patients" }, "stewardResponse": "Approved", "externalId": 4898171657067570139, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472587495732, "stewardId": 411, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\medications\\HS000\\HS500\\HS502\\6809\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\Demographics\\Gender\\Male\\"] } }, "name": "Metfo-R3: B-Male@16:04:54" } } }, { "name": "(042)-R3: B-Male@16:05:17", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Understanding potential health impacts of increasingly prevalent chronic dietary related health conditions, on patients with HIV, specifically among African American populations - where prevalence of such chronic conditions is particularly high; and understanding any impact of medications for chronic conditions in management of HIV.", "createDate": 1472586655712, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 18, "changeDate": 1472587022939, "name": "Health 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Ishus", "roles": ["Researcher"] }, "id": 20, "changeDate": 1472587157443, "name": "Comparing impact of medications for patients with multiple chronic health conditions" }, "stewardResponse": "Approved", "externalId": 5944191251893031620, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472657775334, "stewardId": 539, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Diseases of the circulatory system (390-459.99)\\Hypertensive disease (401-405.99)\\Essential hypertension (401)\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\", "\\\\SHRINE\\SHRINE\\medications\\CV000\\CV800\\29046\\"] } }, "name": "Ess-R3:-Aca-Lis@11:36:14" } } }, { "name": "Ess-R3:-Aca-Ate@11:36:28", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Comparing impact and effectiveness of medications for patients with multiple dietary related chronic health conditions, specifically diabetes mellitus type 2 and hypertension", "createDate": 1472586703950, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 20, "changeDate": 1472587157443, "name": "Comparing impact of medications for patients with multiple chronic health conditions" }, "stewardResponse": "Approved", "externalId": 6680919560460432205, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472657789699, "stewardId": 540, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Diseases of the circulatory system (390-459.99)\\Hypertensive disease (401-405.99)\\Essential hypertension (401)\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\1202\\"] } }, "name": "Ess-R3:-Aca-Ate@11:36:28" } } }, { "name": "Ess-R3:-Aca-Met@11:36:42", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Comparing impact and effectiveness of medications for patients with multiple dietary related chronic health conditions, specifically diabetes mellitus type 2 and hypertension", "createDate": 1472586703950, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 20, "changeDate": 1472587157443, "name": "Comparing impact of medications for patients with multiple chronic health conditions" }, "stewardResponse": "Approved", "externalId": 9091099492570587120, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472657804003, "stewardId": 541, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Diseases of the circulatory system (390-459.99)\\Hypertensive disease (401-405.99)\\Essential hypertension (401)\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\", "\\\\SHRINE\\SHRINE\\medications\\CV000\\CV100\\6918\\"] } }, "name": "Ess-R3:-Aca-Met@11:36:42" } } }, { "name": "Ess-R3:-Aca-Hyd@11:36:57", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Comparing impact and effectiveness of medications for patients with multiple dietary related chronic health conditions, specifically diabetes mellitus type 2 and hypertension", "createDate": 1472586703950, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 20, "changeDate": 1472587157443, "name": "Comparing impact of medications for patients with multiple chronic health conditions" }, "stewardResponse": "Approved", "externalId": 8707285113581419320, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472657818752, "stewardId": 542, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Diseases of the circulatory system (390-459.99)\\Hypertensive disease (401-405.99)\\Essential hypertension (401)\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\", "\\\\SHRINE\\SHRINE\\medications\\CV000\\CV400\\5487\\"] } }, "name": "Ess-R3:-Aca-Hyd@11:36:57" } } }, { "name": "Ess-R3:-Aca-Chl@11:37:11", "topic": { "changedBy": { "userName": "dave", "fullName": "Steward Test Steward Dave", "roles": ["DataSteward", "Researcher"] }, "description": "Comparing impact and effectiveness of medications for patients with multiple dietary related chronic health conditions, specifically diabetes mellitus type 2 and hypertension", "createDate": 1472586703950, "state": "Approved", "createdBy": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "id": 20, "changeDate": 1472587157443, "name": "Comparing impact of medications for patients with multiple chronic health conditions" }, "stewardResponse": "Approved", "externalId": 5475903983983046083, "user": { "userName": "drevil", "fullName": "Mal Ishus", "roles": ["Researcher"] }, "date": 1472657833014, "stewardId": 543, "queryContents": { "queryDefinition": { "expr": { "and": { "term": ["\\\\SHRINE\\SHRINE\\Diagnoses\\Diseases of the circulatory system (390-459.99)\\Hypertensive disease (401-405.99)\\Essential hypertension (401)\\", "\\\\SHRINE\\SHRINE\\Demographics\\Race\\Black or African American\\", "\\\\SHRINE\\SHRINE\\medications\\zzzz\\16681\\", "\\\\SHRINE\\SHRINE\\medications\\CV000\\CV400\\2409\\"] } }, "name": "Ess-R3:-Aca-Chl@11:37:11" } } }] };
}
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term-digest.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term-digest.js
similarity index 92%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term-digest.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/term-digest.js
index cd6b8f063..66d8fbdc3 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term-digest.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term-digest.js
@@ -1,59 +1,60 @@
(function () {
'use strict';
angular.module('shrine.steward.statistics')
.directive('termDigest', TermDigestDirective);
function TermDigestDirective(OntologyTermService) {
- var templateUrl = './app/client/statistics/directives/' +
+ var templateUrl = './app/client/statistics/' +
'ontology-term/term-digest.tpl.html';
var termDigest = {
restrict: 'E',
templateUrl: templateUrl,
controller: QueryDigestController,
controllerAs: 'digest',
scope: {
ontology: '='
},
link: TermDigestLinker,
transclude: true
};
return termDigest;
}
QueryDigestController.$inject = ['$scope', 'OntologyTermService'];
function QueryDigestController($scope, OntologyTermService) {
var digest = this;
//digest.ontologyTermService = OntologyTermService;
var cache = {};
this.getOntologyByTopic = getOntologyByTopic;
function getOntologyByTopic(topicId) {
var defaultData = {
ontology: {},
max: 0
};
var digest = $scope.digest;
if (!$scope.ontology.length) {
digest.ontology = defaultData;
}
else {
digest.ontology = OntologyTermService.buildOntology($scope.ontology, topicId);
+ digest.totalQueries = digest.ontology.queryCount;
digest.max = OntologyTermService.getMax();
}
}
}
function TermDigestLinker(scope) {
scope.$watch('ontology', function (before, after) {
scope.digest.getOntologyByTopic();
});
}
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term-digest.tpl.html b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term-digest.tpl.html
similarity index 100%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term-digest.tpl.html
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/term-digest.tpl.html
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.js
similarity index 78%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.js
index f9ad04841..1a3e1fcce 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.js
@@ -1,24 +1,25 @@
(function () {
'use strict';
angular.module('shrine.steward.statistics')
.directive('queryTerm', TermDirectiveFactory);
function TermDirectiveFactory () {
- var templateUrl = './app/client/statistics/directives/' +
+ var templateUrl = './app/client/statistics/' +
'ontology-term/term.tpl.html';
var termDirective = {
restrict: 'A',
templateUrl: templateUrl,
- controller: TermController
+ controller: TermController,
+ require: '^termDigest'
};
return termDirective;
}
TermController.$inject = ['$scope', 'TermService'];
function TermController ($scope, service) {
$scope.svc = service;
}
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.service.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.service.js
similarity index 100%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.service.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.service.js
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.tpl.html b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.tpl.html
similarity index 83%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.tpl.html
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.tpl.html
index 55378b939..0721cc1fa 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/term.tpl.html
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/term.tpl.html
@@ -1,15 +1,15 @@
<div>
<span class="expandable {{svc.getStyleByFrequency(value.queryCount, 200)}}" ng-show="value.hasChildren()" ng-click="show=!show">
{{(show)? '-' : '+'}}
</span>
<a ng-init="show=false " ng-click="show=!show;" class="{{svc.getStyleByFrequency(value.queryCount, 200)}} tooltip-toggle" aria-label="{{value.queryCount}} queries">
- {{value.key}} - {{svc.getPct(value.queryCount, 200)}}%
+ {{value.key}} - {{svc.getPct(value.queryCount, digest.totalQueries)}}%
</a>
<ul ng-if="value.hasChildren() && show ">
<li ng-repeat="(key, value) in value.children" query-term>
</li>
</ul>
</div>
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/topic-dropdown.js b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/topic-dropdown.js
similarity index 94%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/topic-dropdown.js
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/topic-dropdown.js
index 5241b98e0..681e8d43b 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/topic-dropdown.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/topic-dropdown.js
@@ -1,44 +1,44 @@
(function () {
'use strict';
angular.module('shrine.steward.statistics')
.directive('topicDropdown', TopicDropdownFactory);
function TopicDropdownFactory() {
- var templateUrl = './app/client/statistics/directives/' +
+ var templateUrl = './app/client/statistics/' +
'ontology-term/topic-dropdown.tpl.html';
var topicDropdown = {
scope: {
topics: '=',
topicSelected: '&'
},
restrict: 'E',
controller: TopicDropdownController,
link: TopicDropdownLinker,
controllerAs: 'dropdown',
templateUrl: templateUrl
};
return topicDropdown;
}
TopicDropdownController.$inject = ['$scope', 'OntologyTermService'];
function TopicDropdownController($scope, OntologyTermService) {
var dropdown = this;
dropdown.ontologyTermService = OntologyTermService;
dropdown.topics = $scope.topics;
}
function TopicDropdownLinker(scope) {
var clearWatch = scope.$watch('topics', function (after, before) {
var dropdown = scope.dropdown;
if (after && after.length) {
dropdown.topics = after;
clearWatch();
}
});
}
})();
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/topic-dropdown.tpl.html b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/topic-dropdown.tpl.html
similarity index 59%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/topic-dropdown.tpl.html
rename to apps/steward-app/src/main/js/app/client/statistics/ontology-term/topic-dropdown.tpl.html
index e377da250..a0409b5c3 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/ontology-term/topic-dropdown.tpl.html
+++ b/apps/steward-app/src/main/js/app/client/statistics/ontology-term/topic-dropdown.tpl.html
@@ -1,16 +1,16 @@
<div class="topic-dropdown">
<span class="title">
Filter By Topic:
<span>
<button class="tdd-btn">
<span ng-init="dropdown.selected={title: 'All'}">{{dropdown.selected.title}}</span>
<ul class="tdd-list">
- <li ng-class="{'active': c.tabIndex === undefined}" ng-click="dropdown.selected={title: 'All'}; topicSelected()">
+ <li ng-class="{'active': dropdown.selected.id === undefined}" ng-click="dropdown.selected={title: 'All'}; topicSelected()">
<a href="" >All</a>
</li>
- <li ng-repeat="topic in dropdown.topics" ng-class="{'active': c.tabIndex === undefined}" ng-click="dropdown.selected={title: topic.name, id: topic.id}; topicSelected({topicId: topic.id})">
+ <li ng-repeat="topic in dropdown.topics" ng-class="{'active': dropdown.selected.id === topic.id}" ng-click="dropdown.selected={title: topic.name, id: topic.id}; topicSelected({topicId: topic.id})">
<a href="" >{{topic.name}}</a>
</li>
</ul>
</button>
</div>
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/bar.js b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/bar.js
similarity index 89%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/bar.js
rename to apps/steward-app/src/main/js/app/client/statistics/statistics-graph/bar.js
index d90206439..70bc119d0 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/bar.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/bar.js
@@ -1,35 +1,35 @@
(function () {
'use strict';
angular.module('shrine.steward.statistics')
.directive('graphBar', GraphBarDirective);
function GraphBarDirective() {
- var templateUrl = './app/client/statistics/directives/statistics-graph/' +
+ var templateUrl = './app/client/statistics/statistics-graph/' +
'bar.tpl.html';
var graphBar = {
restrict: 'E',
templateUrl: templateUrl,
controller: GraphBarController,
link: GraphBarLinker,
controllerAs: 'bar',
scope: {
username: '@',
value: '@',
percentage: '@'
}
};
return graphBar;
}
GraphBarController.$inject = ['$scope'];
function GraphBarController($scope) {
var bar = this;
}
function GraphBarLinker(scope) {
var test = arguments;
}
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/bar.tpl.html b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/bar.tpl.html
similarity index 100%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/bar.tpl.html
rename to apps/steward-app/src/main/js/app/client/statistics/statistics-graph/bar.tpl.html
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/new-topic.tpl.html b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/new-topic.tpl.html
similarity index 100%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/new-topic.tpl.html
rename to apps/steward-app/src/main/js/app/client/statistics/statistics-graph/new-topic.tpl.html
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.js b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.js
similarity index 94%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.js
rename to apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.js
index e517f29e1..8ebfea566 100644
--- a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.js
+++ b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.js
@@ -1,48 +1,48 @@
(function () {
angular.module('shrine.steward.statistics')
.directive('statisticsGraph', StatisticsGraphDirective);
function StatisticsGraphDirective() {
- var templateUrl = './app/client/statistics/directives/statistics-graph/' +
+ var templateUrl = './app/client/statistics/statistics-graph/' +
'statistics-graph.tpl.html';
var statisticsGraph = {
restrict: 'E',
templateUrl: templateUrl,
controller: StatisticsGraphController,
controllerAs: 'graph',
link: StatisticsGraphLink,
scope: {
graphData: '=',
graphClick: '&' /** todo pass in click handler. **/
}
};
return statisticsGraph;
}
StatisticsGraphController.$inject = ['$scope', 'StatisticsGraphService'];
function StatisticsGraphController($scope, svc) {
var graph = this;
//graphService = svc;
graph.graphData = $scope.graphData;
graph.toPercentage = toPercentage;
graph.graphClick = $scope.graphClick;
function toPercentage(value) {
var maxQueryCount = svc.getMaxUserQueryCount(graph.graphData.users) || 1;
return svc.getCountAsPercentage(value, maxQueryCount);
}
}
StatisticsGraphLink.$inject = ['scope'];
function StatisticsGraphLink(scope) {
scope.$watch('graphData', function(before, after) {
var graph = scope.graph;
graph.graphData = scope.graphData;
});
var test = arguments;
}
})();
\ No newline at end of file
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.service.js b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.service.js
similarity index 100%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.service.js
rename to apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.service.js
diff --git a/apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.tpl.html b/apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.tpl.html
similarity index 100%
rename from apps/steward-app/src/main/js/app/client/statistics/directives/statistics-graph/statistics-graph.tpl.html
rename to apps/steward-app/src/main/js/app/client/statistics/statistics-graph/statistics-graph.tpl.html