diff --git a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js
index c49bb4d2f..23cb03ce6 100755
--- a/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js
+++ b/shrine-webclient/src/main/html/js-i2b2/cells/CRC/CRC_ctrlr_QryStatus.js
@@ -1,735 +1,736 @@
/**
* @projectDescription The Asynchronous Query Status controller (GUI-only controller).
* @inherits i2b2.CRC.ctrlr
* @namespace i2b2.CRC.ctrlr.QueryStatus
* @author Nick Benik, Griffin Weber MD PhD
* @version 1.0
* ----------------------------------------------------------------------------------------
* updated 8-10-09: Initial Creation [Nick Benik]
*/
function cgmUtcDateParser(dateString){
//Date format: 2011-02-21T14:35:03.480-05:00
try{
splitDateAndTime = dateString.split("T");
vrDate = splitDateAndTime[0].split("-");
vrTime = splitDateAndTime[1].split(":");
strYear = vrDate[0];
strMonth = vrDate[1] - 1;
strDay = vrDate[2];
/*
alert("Year: "+ strYear);
alert("Month: "+ strMonth);
alert("Day: "+ strDay);*/
strHours = vrTime[0];
strMins = vrTime[1];
strSecs = null;
strMills = null;
vSecs = vrTime[2].split(".");
strSecs = vSecs[0];
vMills = vSecs[1].split("-");
strMills = vMills[0];
/*
alert("Hours: "+ strHours);
alert("Minutes: "+ strMins);
alert("Seconds: "+ strSecs);
alert("MilliSeconds: "+ strMills);*/
return new Date(strYear, strMonth, strDay, strHours, strMins, strSecs, strMills);
}
catch(e){
return null;
}
}
i2b2.CRC.ctrlr.QueryStatus = function(dispDIV) { this.dispDIV = dispDIV; };
function trim(sString) {
while (sString.substring(0,1) == '\n') {
sString = sString.substring(1, sString.length);
}
while (sString.substring(sString.length-1, sString.length) == '\n') {
sString = sString.substring(0,sString.length-1);
}
return sString;
}
i2b2.CRC.ctrlr.QueryStatus.prototype = function() {
var private_singleton_isRunning = false;
var private_startTime = false;
var private_refreshInterrupt = false;
function private_refresh_status() {
// callback processor to check the Query Instance
var scopedCallbackQRSI = new i2b2_scopedCallback();
scopedCallbackQRSI.scope = self;
scopedCallbackQRSI.callback = function(results) {
if (results.error) {
alert(results.errorMsg);
return;
} else {
// find our query instance
var ri_list = results.refXML.getElementsByTagName('query_result_instance');
var l = ri_list.length;
for (var i=0; i<l; i++) {
var temp = ri_list[i];
var description = i2b2.h.XPath(temp, 'descendant-or-self::description')[0].firstChild.nodeValue;
self.dispDIV.innerHTML += "<div style=\"clear: both; padding-top: 10px; font-weight: bold;\">" + description + "</div>";
}
var crc_xml = results.refXML.getElementsByTagName('crc_xml_result');
l = crc_xml.length;
for (var i=0; i<l; i++) {
var temp = crc_xml[i];
var xml_value = i2b2.h.XPath(temp, 'descendant-or-self::xml_value')[0].firstChild.nodeValue;
var xml_v = i2b2.h.parseXml(xml_value);
var params = i2b2.h.XPath(xml_v, 'descendant::data[@column]/text()/..');
for (var i2 = 0; i2 < params.length; i2++) {
var name = params[i2].getAttribute("name");
if (i2b2.PM.model.isObfuscated) {
if ( params[i2].firstChild.nodeValue < 4) {
var value = "<3";
} else {
var value = params[i2].firstChild.nodeValue + "±3" ;
}
} else
{
var value = params[i2].firstChild.nodeValue;
}
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 20px; float: left; height: 16px; line-height: 16px;\">" + params[i2].getAttribute("column") + ": <font color=\"#0000dd\">" + value + "</font></div>";
}
var ri_id = i2b2.h.XPath(temp, 'descendant-or-self::result_instance_id')[0].firstChild.nodeValue;
}
//self.dispDIV.innerHTML += this.dispMsg;
}
}
var self = i2b2.CRC.ctrlr.currentQueryStatus;
// this private function refreshes the display DIV
var d = new Date();
var t = Math.floor((d.getTime() - private_startTime)/100)/10;
var s = t.toString();
if (s.indexOf('.') < 0) {
s += '.0';
}
if (private_singleton_isRunning) {
self.dispDIV.innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Running Query: "'+self.QM.name+'"</div>';
// display the current run duration
self.dispDIV.innerHTML += '<div style="float:right">['+s+' secs]</div>';
} else {
self.dispDIV.innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Finished Query: "'+self.QM.name+'"</div>';
self.dispDIV.innerHTML += '<div style="float:right">['+s+' secs]</div>';
// self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; height:16px; line-height:16px; "><div height:16px; line-height:16px; ">Compute Time: ' + (Math.floor((self.QI.end_date - self.QI.start_date)/100))/10 + ' secs</div></div>';
// self.dispDIV.innerHTML += '</div>';
$('runBoxText').innerHTML = "Run Query";
}
self.dispDIV.innerHTML += '</div>';
if ((!private_singleton_isRunning) && (undefined != self.QI.end_date)){
self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; line-height:16px; ">Compute Time: '+ (Math.floor((self.QI.end_date - self.QI.start_date)/100))/10 +' secs</div>';
}
var foundError = false;
for (var i=0; i < self.QRS.length; i++) {
var rec = self.QRS[i];
if (rec.QRS_time) {
var t = '<font color="';
switch(rec.QRS_Status) {
case "ERROR":
self.dispDIV.innerHTML += '<div style="clear:both; height:16px; line-height:16px; "><div style="float:left; font-weight:bold; height:16px; line-height:16px; ">'+rec.title+'</div><div style="float:right; height:16px; line-height:16px; "><font color="#dd0000">ERROR</font></div>';
// self.dispDIV.innerHTML += '<div style="float:right; height:16px; line-height:16px; "><font color="#dd0000">ERROR</font></div>'; //['+rec.QRS_time+' secs]</div>';
foundError = true;
break;
case "COMPLETED":
case "FINISHED":
foundError = false;
//t += '#0000dd">'+rec.QRS_Status;
break;
case "INCOMPLETE":
case "WAITTOPROCESS":
case "PROCESSING":
self.dispDIV.innerHTML += '<div style="clear:both; height:16px;line-height:16px; "><div style="float:left; font-weight:bold; height:16px; line-height:16px; ">'+rec.title+'</div><div style="float:right; height:16px; line-height:16px; "><font color="#00dd00">PROCESSING</font></div>';
// self.dispDIV.innerHTML += '<div style="float:right; height:16px; line-height:16px; "><font color="#00dd00">PROCESSING</font></div>'; //['+rec.QRS_time+' secs]</div>';
alert('Your query has timed out and has been rescheduled to run in the background. The results will appear in "Previous Queries"');
foundError = true;
//t += '#00dd00">'+rec.QRS_Status;
break;
}
t += '</font> ';
//self.dispDIV.innerHTML += '<div style="float:right; height:16px; line-height:16px; ">'+t+'['+rec.QRS_time+' secs]</div>';
}
self.dispDIV.innerHTML += '</div>';
if (foundError == false) {
if (rec.QRS_DisplayType == "CATNUM") {
//make call to get QRSI.
i2b2.CRC.ajax.getQueryResultInstanceList_fromQueryResultInstanceId("CRC:QueryStatus", {qr_key_value: rec.QRS_ID}, scopedCallbackQRSI);
} else if ((rec.QRS_DisplayType == "LIST") && (foundError == false)) {
self.dispDIV.innerHTML += "<div style=\"clear: both; padding-top: 10px; font-weight: bold;\">" + rec.QRS_Description + "</div>";
} else if (i2b2.h.isDQ) {
self.dispDIV.innerHTML += "<div style=\"margin-left:20px; clear:both; height:16px; line-height:16px; \"><div style=\"float:left; height:16px; line-height:16px; \">" + rec.title + "</div><div style=\"float:right; height:16px; line-height:16px; \"><font color=\"#0000dd\">" + rec.QRS_Status + "</font> [" + rec.QRS_time + " secs]</div></div>";
}
if (rec.QRS_Type == "PATIENTSET") {
// Check to see if timeline is checked off, if so switch to timeline
var t2 = $('dialogQryRun').select('INPUT.chkQueryType');
for (var i=0;i<t2.length; i++) {
var curItem = t2[i].nextSibling.data;
if (curItem != undefined)
{
curItem = curItem.toLowerCase();
//curitem = curItem.trim();
}
if ((t2[i].checked == true) && (rec.size > 0) && (curItem == " timeline")
&& !(i2b2.h.isBadObjPath('i2b2.Timeline.cfg.config.plugin'))
) {
i2b2.hive.MasterView.setViewMode('Analysis');
i2b2.PLUGINMGR.ctrlr.main.selectPlugin("Timeline");
//Process PatientSet
rec.QM_id = self.QM.id;
rec.QI_id = self.QI.id;
rec.PRS_id = rec.QRS_ID;
rec.result_instance_id = rec.PRS_id;
var sdxData = {};
sdxData[0] = i2b2.sdx.Master.EncapsulateData('PRS', rec);
i2b2.Timeline.prsDropped(sdxData);
i2b2.Timeline.setShowMetadataDialog(false);
//Process Concepts, put all concepts in one large set
sdxData = {};
for (var j2 = 0; j2 < i2b2.CRC.model.queryCurrent.panels.length; j2++) {
var panel_list = i2b2.CRC.model.queryCurrent.panels[j2]
var panel_cnt = panel_list.length;
for (var p2 = 0; p2 < panel_cnt; p2++) {
// Concepts
for (var i2=0; i2 < panel_list[p2].items.length; i2++) {
sdxData[0] = panel_list[p2].items[i2];
i2b2.Timeline.conceptDropped(sdxData);
}
}
}
//$('Timeline-pgstart').value = '1';
//$('Timeline-pgsize').value = '10';
//i2b2.Timeline.pgGo(0);
i2b2.Timeline.yuiTabs.set('activeIndex', 1);
i2b2.Timeline.setShowMetadataDialog(true);
}
}
}
}
}
if ((undefined != self.QI.message) && (foundError == false)) {
self.dispDIV.innerHTML += '<div style="clear:both; float:left; padding-top: 10px; font-weight:bold">Status</div>';
var mySplitResult = self.QI.message.split("<?xml");
for(i3 = 1; i3 < mySplitResult.length; i3++){
var xml_v = i2b2.h.parseXml(trim("<?xml " + mySplitResult[i3]));
for (var i2 = 0; i2 < xml_v.childNodes.length; i2++) {
try {
if (i2b2.PM.model.isObfuscated) {
if (i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue < 4)
{
var value = "<3";
} else {
var value = i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue + "±3";
}
} else
{
var value = i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue;
}
self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; line-height:16px; ">' + i2b2.h.XPath(xml_v, 'descendant::name/text()/..')[i2].firstChild.nodeValue + '<font color="#0000dd">: ' + value + ' secs</font></div>';
//self.dispDIV.innerHTML += '<div style="float: left; height: 16px; margin-right: 100px; line-height: 16px;"><font color="#0000dd">: ' + i2b2.h.XPath(xml_v, 'descendant::total_time_second/text()/..')[i2].firstChild.nodeValue + ' secs</font></div>';
} catch (e) {}
}
}
}
self.dispDIV.style.display = 'none';
self.dispDIV.style.display = 'block';
if (!private_singleton_isRunning && private_refreshInterrupt) {
// make sure our refresh interrupt is turned off
try {
clearInterval(private_refreshInterrupt);
private_refreshInterrupt = false;
} catch (e) {}
}
}
function private_cancelQuery() {
if (private_singleton_isRunning) {
try {
var self = i2b2.CRC.ctrlr.currentQueryStatus;
i2b2.CRC.ctrlr.history.queryDeleteNoPrompt(self.QM.id);
clearInterval(private_refreshInterrupt);
private_refreshInterrupt = false;
private_singleton_isRunning = false;
$('runBoxText').innerHTML = "Run Query";
self.dispDIV.innerHTML += '<div style="clear:both; height:16px; line-height:16px; text-align:center; color:r#ff0000;">QUERY CANCELLED</div>';
i2b2.CRC.ctrlr.currentQueryStatus = false;
} catch (e) {}
}
}
function private_startQuery() {
var self = i2b2.CRC.ctrlr.currentQueryStatus;
if (private_singleton_isRunning) {
return false;
}
private_singleton_isRunning = true;
self.dispDIV.innerHTML = '<b>Processing Query: "'+this.name+'"</b>';
self.QM.name = this.name;
self.QRS = [];
self.QI = {};
// callback processor to run the query from definition
this.callbackQueryDef = new i2b2_scopedCallback();
this.callbackQueryDef.scope = this;
this.callbackQueryDef.callback = function(results) {
//if error
if (results.error) {
var temp = results.refXML.getElementsByTagName('response_header')[0];
if (undefined != temp) {
results.errorMsg = i2b2.h.XPath(temp, 'descendant-or-self::result_status/status')[0].firstChild.nodeValue;
if (results.errorMsg.substring(0,9) == "LOCKEDOUT")
{
results.errorMsg = 'As an "obfuscated user" you have exceeded the allowed query repeat and are now LOCKED OUT, please notify your system administrator.';
}
}
alert(results.errorMsg);
private_cancelQuery();
return;
}
//query was successful so update global settings.
clearInterval(private_refreshInterrupt);
private_refreshInterrupt = false;
private_singleton_isRunning = false;
//update the ui
var self = i2b2.CRC.ctrlr.currentQueryStatus;
// this private function refreshes the display DIV
var d = new Date();
var t = Math.floor((d.getTime() - private_startTime)/100)/10;
var s = t.toString();
if (s.indexOf('.') < 0) {
s += '.0';
}
self.dispDIV.innerHTML = '<div style="clear:both;"><div style="float:left; font-weight:bold">Finished Query: "'+self.QM.name+'"</div>';
self.dispDIV.innerHTML += '<div style="float:right">['+s+' secs]</div><br/>';
$('runBoxText').innerHTML = "Run Query";
//------------ QI Logic -------------------//
// find our query instance
var qi_list = results.refXML.getElementsByTagName('query_instance');
var l = qi_list.length;
for (var i=0; i<l; i++) {
var qiNode = qi_list[i];
var qi_id = i2b2.h.XPath(qiNode, 'descendant-or-self::query_instance_id')[0].firstChild.nodeValue;
this.QI.message = i2b2.h.getXNodeVal(qiNode, 'message');
//start date.
this.QI.start_date = i2b2.h.getXNodeVal(qiNode, 'start_date');
if (!Object.isUndefined(this.QI.start_date)) {
this.QI.start_date = new Date(this.QI.start_date.substring(0,4), this.QI.start_date.substring(5,7)-1, this.QI.start_date.substring(8,10), this.QI.start_date.substring(11,13),this.QI.start_date.substring(14,16),this.QI.start_date.substring(17,19),this.QI.start_date.substring(20,23));
}
//end date.
this.QI.end_date = i2b2.h.getXNodeVal(qiNode, 'end_date');
if (!Object.isUndefined(this.QI.end_date)) {
this.QI.end_date = new Date(this.QI.end_date.substring(0,4), this.QI.end_date.substring(5,7)-1, this.QI.end_date.substring(8,10), this.QI.end_date.substring(11,13),this.QI.end_date.substring(14,16),this.QI.end_date.substring(17,19),this.QI.end_date.substring(20,23));
}
// found the query instance, extract the info
this.QI.status = i2b2.h.XPath(qiNode, 'descendant-or-self::query_status_type/name')[0].firstChild.nodeValue;
this.QI.statusID = i2b2.h.XPath(qiNode, 'descendant-or-self::query_status_type/status_type_id')[0].firstChild.nodeValue;
}
//add the compute time.
self.dispDIV.innerHTML += '</div>';
self.dispDIV.innerHTML += '<div style="margin-left:20px; clear:both; line-height:16px; ">Compute Time: '+ s +' secs</div>';
// -- query result instance vars -- //
- var qriNodeList = results.refXML.getElementsByTagName('query_result_instance'),
+ var qriNodeList = results.refXML.getElementsByTagName('query_result_instance'),
qriIdx, qriNode, qriObj, breakdownType,
+ errorObjects = [];
// -- breakdown vars -- //
brdNodeList, brdNode, brdIdx, brdObj;
-
- var errorObjects = [];
//iterate through each query result.
for (qriIdx = 0; qriIdx < qriNodeList.length; qriIdx++) {
//init qri vars.
qriNode = qriNodeList[qriIdx];
qriObj = parseQueryResultInstance(qriNode);
breakdownType = '';
//which hospital
self.dispDIV.innerHTML += '<div style="clear:both;"><br/><div style="float:left; font-weight:bold; margin-left:20px;">' + qriObj.description + ' "' +self.QM.name+ '"</div>';
- //for testing.
- qriObj.statusName = "ERROR"
-
//if there was an error display it.
if((qriObj.statusName == "ERROR") || (qriObj.statusName == "UNAVAILABLE")){
var errorObj = {
shortDescription: "Desination site was unable to translate SHRINE query term to local ontology.",
stackTrace: "Error mapping query terms from" +
" network to local forms. request:" +
"RunQueryRequest(I2B2_PROJECT_NAME,180000 milliseconds,"+
"AuthenticationInfo(*****,****,Credential(******,false)),"+
"QUERY_ID,None,Set(PATIENT_COUNT_XML)," +
"QueryDefinition(QUERY_NAME,Some(" +
"Term(\\PROJECT\\AND\\CONCEPT\\PATH\\OF\\UNMAPPED\\TERM),"+
"Some(ANY),None,None,None,List())))",
longDescription:
'The site responding to the query does not understand how to map the SHRINE query term it was given to its own local i2b2 term.)',
wikiUrl:
'https://open.med.harvard.edu/wiki/display/SHRINETEAM/Error+Types+for+Improved+Error+Messaging'
};
errorObjects.push(errorObj);
self.dispDIV.innerHTML += "<span title='" + qriObj.statusDescription +"'> <b><a class='query-error-anchor' href='#' style='color:#ff0000'> <b><span color='#ff0000'>" + errorObj.shortDescription + "</span></b></a></b></span>";
continue;
}
else if((qriObj.statusName == "PROCESSING")){
self.dispDIV.innerHTML += " - <span><b><font color='#00dd00'>Still Processing Request</font></b></span>";
continue;
}
else if(["COMPLETED","FINISHED"].indexOf(qriObj.statusName) < 0){
self.dispDIV.innerHTML += " - <span><b><font color='#dd0000'>Results not available</font></b></span>";
continue;
}
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 30px; float: left; height: 16px; line-height: 16px;\">"
+ "Patient Count"
+ ": <font color=\"#0000dd\">"
+ getObfuscatedResult(qriObj.setSize, 10)
+ "</font></div>";
//grab breakdown data.
brdNodeList = i2b2.h.XPath(qriNode, 'descendant-or-self::breakdown_data/column');
for(brdIdx = 0; brdIdx < brdNodeList.length; brdIdx ++){
//init brd vars.
brdNode = brdNodeList[brdIdx];
brdObj = parseBreakdown(brdNode);
if(brdObj.parentResultType !== breakdownType){
breakdownType = brdObj.parentResultType;
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 30px; float: left; height: 16px; line-height: 16px;\"><br/><font>"
+ getBreakdownTitle(brdObj.parentResultType)
+ ":</font></div>";
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 40px; float: left; height: 16px; line-height: 16px;\"></div>";
}
self.dispDIV.innerHTML += "<div style=\"clear: both; margin-left: 40px; float: left; height: 16px; line-height: 16px;\">"
+ brdObj.name
+ ": <font color=\"#0000dd\">"
+ getObfuscatedResult(brdObj.value, 10)
+ "</font></div>";
}
}
createErrorDialogue(self.dispDIV, errorObjects);
i2b2.CRC.ctrlr.history.Refresh();
}
/**
* Scope for error dialog.
*/
function createErrorDialogue (container, errorObjects) {
+ // -- no errors abandon ship! -- //
+ if(errorObjects.length < 1) {
+ return;
+ }
+
var anchors, btnExpand, btnContract, errObjects = errorObjects, errorData;
//this sets up the events.
anchors = container.getElementsByClassName('query-error-anchor');
if(anchors.length == 0) {
return;
}
addAnchorEvents();
function expandErrorDetailDiv (ev) {
btnExpand.style.display = 'none';
btnContract.style.display = 'inline';
document.getElementById('errorDetailDiv').style.height = '200px';
$('errorDetailDiv').innerHTML = '<span style="font-weight: bold">' +errorData.shortDescription + '<br/><br/>' +
errorData.longDescription + '<br/><br/>' +
errorData.stackTrace + '<span/><br/><br/><a href="' +
errorData.wikiUrl + '"' +' target="_blank">Click here for more information.</a>';
}
function retractErrorDetailDiv (ev) {
btnExpand.style.display = 'inline';
btnContract.style.display = 'none';
document.getElementById('errorDetailDiv').style.height = '80px';
$('errorDetailDiv').innerHTML = '<span style="font-weight: bold">' +errorData.shortDescription + '<br/><br/>' +
errorData.longDescription + '<br/><br/>'
}
function onClick(event) {
event.preventDefault();
errorData = event.currentTarget.__errorData__;
btnExpand = document.getElementById('btnExpandErrorDetail');
btnContract = document.getElementById('btnContractErrorDetail');
// -- add event listeners for expand and contract as well --//
btnExpand.addEventListener('click', expandErrorDetailDiv, false);
btnContract.addEventListener('click', retractErrorDetailDiv, false);
showErrorDetail(errorData);
}
function showErrorDetail(detailObj) {
var handleCancel = function() {
this.cancel();
removeAllEvents();
retractErrorDetailDiv();
};
var dialogErrorDetail = new YAHOO.widget.SimpleDialog("dialogErrorDetail", {
width: "820px",
fixedcenter: true,
constraintoviewport: true,
modal: true,
zindex: 700,
buttons: [ {
text: "Done",
handler: handleCancel,
isDefault: true
}]
});
dialogErrorDetail._doClose = function (e) {
e.preventDefault();
this.cancel();
removeAllEvents();
retractErrorDetailDiv();
}
$('dialogErrorDetail').show();
dialogErrorDetail.validate = function(){
return true;
};
dialogErrorDetail.render(document.body);
// / display the dialoge
dialogErrorDetail.center();
dialogErrorDetail.show();
$('errorDetailDiv').innerHTML = '<span style="font-weight: bold">' + errorData.shortDescription + '<span/>';
}
function addAnchorEvents () {
var el, length = anchors.length;
// -- will need to iterate over these once they are created and add event listeners.
for(var i = 0; i < length; i ++) {
var el = anchors[i];
el.__errorData__ = errorObjects[i];
el.addEventListener('click', onClick, false);
}
}
function removeAllEvents () {
btnExpand.removeEventListener('click', expandErrorDetailDiv);
btnContract.removeEventListener('click', retractErrorDetailDiv);
}
}
/**
*
* @param qriNode
* @returns {{qiStatusName: string, qiStatusDescription: string, qiSetSize: string, qiDescription: string, qiResultName: string, qiResultDescription: string}}
*/
function parseQueryResultInstance(qriNode){
var qriObj = {
statusName: grabXmlNodeData(qriNode, 'descendant-or-self::query_status_type/name'),
statusDescription: grabXmlNodeData(qriNode, 'descendant-or-self::query_status_type/description'),
description: grabXmlNodeData(qriNode, 'descendant-or-self::description')
};
if(qriObj.statusName == "ERROR"){
return qriObj;
}
qriObj.setSize = grabXmlNodeData(qriNode, 'descendant-or-self::set_size');
qriObj.resultName = grabXmlNodeData(qriNode, 'descendant-or-self::query_result_type/name');
qriObj.resultDescription = grabXmlNodeData(qriNode, 'descendant-or-self::query_result_type/description');
//if is obfuscated.
/*if (i2b2.PM.model.isObfuscated) {
qriObj.setSize = (+qriObj.setSize < 4)? "<3" : qriObj.setSize + "+-3";
}*/
return qriObj;
}
/**
*
* @param brdNode
*/
function parseBreakdown(brdNode){
var brdObj = {
name: grabXmlNodeData(brdNode, 'name'),
value: grabXmlNodeData(brdNode, 'value'),
parentResultType: grabXmlNodeData(brdNode, 'parent::breakdown_data/resultType')
}
return brdObj;
}
/**
* Return breakdown title based on breakdown type.
* @param breakdownType
* @returns {*}
*/
function getBreakdownTitle(breakdownType) {
return {
'PATIENT_AGE_COUNT_XML': 'Patient Age Count Breakdown',
'PATIENT_GENDER_COUNT_XML': 'Patient Gender Count Breakdown',
'PATIENT_RACE_COUNT_XML': 'Patient Race Count Breakdown',
'PATIENT_VITALSTATUS_COUNT_XML':'Patient Vital Status Count Breakdown'
}[breakdownType];
};
/**
* Method for hiding the precise value of a query below a certain result.
* @param resultCount - the number of results from a query.
* @param obfuscationSetting - do not reveal this number of results
*/
function getObfuscatedResult(resultCount, obfuscationSetting) {
var resultTitle = " - ",
name = " patients",
offsetText = " +-3",
isException = i2b2.PM.model.isObfuscated === false;
//default to 10.
obfuscationSetting = (arguments.length > 1) ? arguments[1] : 10;
//if user role is an exception. return result.
if (isException) {
return resultTitle += resultCount + name;
}
resultTitle += ((resultCount >= obfuscationSetting)?
resultCount + offsetText + name: obfuscationSetting + name + " or fewer");
return resultTitle;
}
/**
* Grab data for node, return empty string if none.
* @param node
* @param xPathString
* @returns {string}
*/
function grabXmlNodeData(node, xPathString){
return (i2b2.h.XPath(node, xPathString).length)? i2b2.h.XPath(node, xPathString)[0].firstChild.nodeValue : '';
}
// switch to status tab
i2b2.CRC.view.status.showDisplay();
// timer and display refresh stuff
private_startTime = new Date();
private_refreshInterrupt = setInterval("i2b2.CRC.ctrlr.currentQueryStatus.refreshStatus()", 100);
// AJAX call
i2b2.CRC.ajax.runQueryInstance_fromQueryDefinition("CRC:QueryTool", this.params, this.callbackQueryDef);
}
return {
name: "",
polling_interval: 1000,
QM: {id:false, status:""},
QI: {id:false, status:""},
QRS:{},
displayDIV: false,
running: false,
started: false,
startQuery: function(queryName, ajaxParams) {
this.name = queryName;
this.params = ajaxParams;
private_startQuery.call(this);
},
cancelQuery: function() {
private_cancelQuery();
},
isQueryRunning: function() {
return private_singleton_isRunning;
},
refreshStatus: function() {
private_refresh_status();
}
};
}();
i2b2.CRC.ctrlr.currentQueryStatus = false;