diff --git a/pipelineall.run b/pipelineall.run
new file mode 100644
index 0000000..2fccea2
--- /dev/null
+++ b/pipelineall.run
@@ -0,0 +1,60 @@
+#!/bin/bash
+#SBATCH -p debug
+#SBATCH --workdir /home/aymanns/motion-correction-paper
+#SBATCH --nodes 1
+#SBATCH --ntasks 1
+#SBATCH --cpus-per-task 1
+#SBATCH --mem 128000
+#SBATCH --time 01:00:00
+module load matlab
+module load jdk
+module load gcc
+module load openblas/0.2.19-openmp
+
+echo STARTING at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="files_4_170609_fly1_000.json"'
+echo FINISHED preprocessing at `date`
+matlab -nodesktop -nodisplay -r "test('files_4_170609_fly1_000.json')"
+echo FINISHED Matlab at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="files_4_170609_fly1_000.json"'
+echo FINISHED Fiji at `date`
+
+echo STARTING at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="files_2_170608_fly1_007.json"'
+echo FINISHED preprocessing at `date`
+matlab -nodesktop -nodisplay -r "test('files_2_170608_fly1_007.json')"
+echo FINISHED Matlab at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="files_2_170608_fly1_007.json"'
+echo FINISHED Fiji at `date`
+
+echo STARTING at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="files_4_170609_fly1_001.json"'
+echo FINISHED preprocessing at `date`
+matlab -nodesktop -nodisplay -r "test('files_4_170609_fly1_001.json')"
+echo FINISHED Matlab at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="files_4_170609_fly1_001.json"'
+echo FINISHED Fiji at `date`
+
+echo STARTING at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="files_4_170609_fly1_005.json"'
+echo FINISHED preprocessing at `date`
+matlab -nodesktop -nodisplay -r "test('files_4_170609_fly1_005.json')"
+echo FINISHED Matlab at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="files_4_170609_fly1_005.json"'
+echo FINISHED Fiji at `date`
+
+echo STARTING at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="files_5_170609_fly2_005.json"'
+echo FINISHED preprocessing at `date`
+matlab -nodesktop -nodisplay -r "test('files_5_170609_fly2_005.json')"
+echo FINISHED Matlab at `date`
+/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="files_5_170609_fly2_005.json"'
+echo FINISHED Fiji at `date`
+
+#echo STARTING at `date`
+#/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/preprocessing.py 'parameter_file="files_1_170414_fly1_000.json"'
+#echo FINISHED preprocessing at `date`
+#matlab -nodesktop -nodisplay -r "test('files_1_170414_fly1_000.json')"
+#echo FINISHED Matlab at `date`
+#/home/aymanns/Fiji.app/ImageJ-linux64 --ij2 --headless --console --run /home/aymanns/motion-correction-paper/fiji_script_vertical_combination.py 'parameter_file="files_1_170414_fly1_000.json"'
+#echo FINISHED Fiji at `date`