diff --git a/ShoulderCase/@Muscle/Muscle.m b/ShoulderCase/@Muscle/Muscle.m
index fe596dd..bd5f8dc 100644
--- a/ShoulderCase/@Muscle/Muscle.m
+++ b/ShoulderCase/@Muscle/Muscle.m
@@ -1,140 +1,140 @@
 classdef Muscle < handle
 % The Muscle class is linked to a segmented muscle file (a mask)
 % and to the slice it has been segmented out of.
 %
 % Then, this class can measured values linked to the PCSA and the
 % muscle's degeneration.
 
   properties
     container = nan;
     name = "";
     segmentationName = "";
     sliceName = "";
     
     PCSA = nan;
     atrophy = nan;
     fat = nan;
     osteochondroma = nan;
     degeneration = nan;
 
     centroid = nan;
     forceApplicationPoint = nan;
     forceVector = nan;
   end
 
   properties (Access = ?RotatorCuff)
     subdivisions 
   end
 
   methods
     function obj = Muscle(musclesContainer,muscleName)
       obj.container = musclesContainer;
       obj.name = muscleName;
 
       [~, ~] = mkdir(obj.dataPath);
       [~, ~] = mkdir(obj.dataMaskPath);
     end
 
     function output = dataPath(obj)
       output = fullfile(obj.container.dataPath, obj.name);
     end
 
     function output = dataMaskPath(obj)
       output = fullfile(obj.dataPath, "mask");
     end
 
     function output = dataContourPath(obj)
       output = fullfile(obj.dataPath, "contour");
     end
 
     function setSliceName(obj, value)
       obj.sliceName = value;
     end
 
     function setSegmentationName(obj, value)
       obj.segmentationName = value;
     end
 
     function output = loadMask(obj, maskSuffix)
       output = logical(imread(fullfile(obj.dataMaskPath,...
         obj.segmentationName+"_"+maskSuffix+".png")));
     end
 
     function saveMask(obj, mask, maskSuffix)
       imwrite(mask, fullfile(obj.dataMaskPath,...
         obj.segmentationName+"_"+maskSuffix+".png"));
     end
 
     function output = loadSlice(obj, sliceSuffix)
       filePattern = fullfile(obj.container.dataSlicesPath,...
         obj.sliceName + "_" + sliceSuffix + "*");
       matchingFile = dir(filePattern);
       assert(not(isempty(matchingFile)),...
         "File matching %s not found", filePattern);
       assert(length(matchingFile) <= 1,...
         "Multiple matching files found. Include file extension in given suffix");
 
       if endsWith(matchingFile.name, ".mat")
         loadedFile = load(fullfile(matchingFile.folder, matchingFile.name));
         % loaded Matlab archives are structures whose fields contain the saved 
         % variables. When only one variable is saved we want to return its value 
         % directly and avoid having to retrieve the original variable name.
         loadedVariables = string(fields(loadedFile));
         if isequal(length(loadedVariables), 1)
           loadedFile = loadedFile.(loadedVariables);
         end
         output = loadedFile;
       elseif endsWith(matchingFile.name, ".png")
         output = imread(fullfile(matchingFile.folder, matchingFile.name));
       end
     end
 
     function output = measureFirst(obj)
       % Call methods that can be run after morphology() methods has been run 
       % by all ShoulderCase objects.
-      obj.setSliceName("rotatorCuffMatthieu");
-      obj.setSegmentationName("autoMatthieu");
+      obj.setSliceName(getConfig().rotatorCuffSliceName);
+      obj.setSegmentationName(getConfig().rotatorCuffSegmentationName);
       radialSubdivisions = getConfig().numberOfMuscleSubdivisions.radial;
       angularSubdivisions = getConfig().numberOfMuscleSubdivisions.angular;
       success = Logger.timeLogExecution(...
         obj.name+sprintf(" subdivide segmentation %d by %d: ",...
           radialSubdivisions, angularSubdivisions),...
         @(obj) obj.subdivide(radialSubdivisions, angularSubdivisions), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" measure and save contour: ",...
         @(obj) obj.measureAndSaveContour(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" measure and save centroid: ",...
         @(obj) obj.measureAndSaveCentroid(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" PCSA: ",...
         @(obj) obj.measurePCSA(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" atrophy: ",...
         @(obj) obj.measureAtrophy(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" fat infiltration: ",...
         @(obj) obj.measureFatInfiltration(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" osteochondroma: ",...
         @(obj) obj.measureOsteochondroma(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" degeneration: ",...
         @(obj) obj.measureDegeneration(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" humeral head contact point: ",...
         @(obj) obj.measureHumerusContactPoint(), obj);
       success = success | Logger.timeLogExecution(...
         obj.name+" force: ",...
         @(obj) obj.measureForceVector(), obj);
       % Saving subdivisions resulting from obj.subdivide(10,10) increases the 
       % file size by roughly 15MB (x2000%) for 1 shoulder only.
       % This caused problems with the MATLAB save/load functions and, even
       % if saving in the v7.3 MAT-file version solved the problems, subdivisions 
       % don't need to be saved so they are removed here.
       obj.subdivisions = [];
       output = success;
     end
   end
 
 end
diff --git a/setup.m b/setup.m
index c3c641e..61b62a5 100644
--- a/setup.m
+++ b/setup.m
@@ -1,43 +1,45 @@
 function setup()
     % to execute once after cloning the repo.
     createDefaultConfigFile();
 
     addpath(genpath(pwd));
 end
 
 
 
 function createDefaultConfigFile()
     defaultConfig.maxSCaseIDDigits = 3;
     defaultConfig.SCaseIDValidTypes = ["N", "P"];
     defaultConfig.pythonDir = "/shoulder/methods/python/rcseg";
     defaultConfig.dataDir = "/shoulder/dataDev";
     defaultConfig.casesToMeasure = ["*"];
     
     defaultConfig.shouldersToMeasure.rightAuto = true;
     defaultConfig.shouldersToMeasure.rightManual = true;
     defaultConfig.shouldersToMeasure.leftAuto = true;
     defaultConfig.shouldersToMeasure.leftManual = true;
     
     defaultConfig.standardMeasurementsToRun.loadData = true;
     defaultConfig.standardMeasurementsToRun.morphology = true;
     defaultConfig.standardMeasurementsToRun.measureFirst = true;
     defaultConfig.standardMeasurementsToRun.measureSecond = true;
 
     defaultConfig.specialMeasurementsToRun.sliceAndSegment = false;
     defaultConfig.specialMeasurementsToRun.calcDensity = false;
 
     defaultConfig.specialMeasurementsArguments.sliceAndSegment = [];
     defaultConfig.specialMeasurementsArguments.calcDensity = [];
 
+    defaultConfig.rotatorCuffSliceName = "rotatorCuffMatthieu";
+    defaultConfig.rotatorCuffSegmentationName = "autoMatthieu";
     defaultConfig.numberOfMuscleSubdivisions.radial = 10;
     defaultConfig.numberOfMuscleSubdivisions.angular = 10;
 
     defaultConfig.overwriteMeasurements = false;
     defaultConfig.saveMeasurements = false;
     defaultConfig.saveAllMeasurementsInOneFile = false;
 
     fid = fopen('config.json','w');
     fprintf(fid, replace(jsonencode(defaultConfig), ",", ",\n"));
     fclose(fid);
 end
\ No newline at end of file