diff --git a/setup.m b/setup.m index f1a2730..3250812 100644 --- a/setup.m +++ b/setup.m @@ -1,39 +1,40 @@ function setup() % to execute once after cloning the repo. createDefaultConfigFile(); addpath(genpath(pwd)); end function createDefaultConfigFile() defaultConfig.maxSCaseIDDigits = 3; defaultConfig.SCaseIDValidTypes = ["N", "P"]; defaultConfig.pythonDir = "/shoulder/methods/python/rcseg"; defaultConfig.dataDir = "/shoulder/dataDev"; + defaultConfig.casesToMeasure = ["*"]; defaultConfig.shouldersToMeasure.rightAuto = true; defaultConfig.shouldersToMeasure.rightManual = true; defaultConfig.shouldersToMeasure.leftAuto = true; defaultConfig.shouldersToMeasure.leftManual = true; defaultConfig.standardMeasurementsToRun.loadData = true; defaultConfig.standardMeasurementsToRun.morphology = true; defaultConfig.standardMeasurementsToRun.measureFirst = true; defaultConfig.standardMeasurementsToRun.measureSecond = true; defaultConfig.specialMeasurementsToRun.sliceAndSegment = false; defaultConfig.specialMeasurementsToRun.calcDensity = false; defaultConfig.specialMeasurementsArguments.sliceAndSegment = []; defaultConfig.specialMeasurementsArguments.calcDensity = []; defaultConfig.overwriteMeasurements = false; defaultConfig.saveMeasurements = false; defaultConfig.saveAllMeasurementsInOneFile = false; fid = fopen('config.json','w'); fprintf(fid, replace(jsonencode(defaultConfig), ",", ",\n")); fclose(fid); end \ No newline at end of file