Diffusion functions (master) History

R10177/R_funcs.R
master6893a2a12861eb13c5d96fb…

Apr 16 2020

added cv error and cv std to the result lists of getActivities
6893a2a12861
·pulver on Apr 16 2020, 10:28.
added lamba_min to the return of getActivities
2ef96af9c686
·pulver on Apr 16 2020, 10:15.

Apr 15 2020

camelCap getActivities
48057c61b909
·pulver on Apr 15 2020, 15:31.

Apr 9 2020

corrected perspectives
1d8d54950a2f
·pulver on Apr 9 2020, 19:47.
plotActivities
d4a2d7ac5a71
·pulver on Apr 9 2020, 18:29.
TPM mappable normalization not finished
c66180c8bfd1
·pulver on Apr 9 2020, 09:47.

Apr 6 2020

simple parallel with 1 core per glmnet instance, no parallel on CV
5f9fd1c6fd93
·pulver on Apr 6 2020, 19:33.

Apr 3 2020

default k fold = 5
f7804fe4fb09
·pulver on Apr 3 2020, 19:25.
clean output as list of r2 and activities for get_activities
cecfd2d4e51d
·pulver on Apr 3 2020, 18:56.

Mar 24 2020

get_coefficients polished and tested on sample matrices. Not confirmed on whole…
15c3143b1f5d
·pulver on Mar 24 2020, 17:38.

Mar 23 2020

get_coefficients for ISMARA like TF activity analysis, doesnt run yet
2c9dca0a3566
·pulver on Mar 23 2020, 18:43.

Mar 16 2020

corrected high leverage function to work with hat and not hatvalues (predictor…
9c18b24957b9
·pulver on Mar 16 2020, 19:26.
bullshit function purge high leverage points and aliases lm()
06f2b57d66dd
·pulver on Mar 16 2020, 18:39.
get aliased predictors from lm()
998681712f0b
·pulver on Mar 16 2020, 15:39.
high leverage points
2210fb6c958f
·pulver on Mar 16 2020, 10:13.

Mar 11 2020

R function source file get_TPM and correlation heatmap
fd2803c34f0a
·pulver on Mar 11 2020, 09:14.