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convert_array.sh
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Wed, Aug 14, 20:29

convert_array.sh
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#!/bin/bash
#SBATCH --qos serial
#SBATCH --nodes 1
#SBATCH --ntasks 1
#SBATCH --cpus-per-task 1
#SBATCH --mem 230G
#SBATCH --time 1-01:01:01
#SBATCH --error=slurm-%j.stderr
#SBATCH --output=slurm-%j.stdout
#SBATCH --job-name=convert_temperature
#SBATCH --mail-type=NONE
#SBATCH --mail-user=recep.kubilay@epfl.ch
#SBATCH --array=281-333
module purge
source /home/kubilay/anaconda3/bin/activate
conda activate muspectre_env2
export LD_LIBRARY_PATH=/home/kubilay/pnetcdf/lib/:$LD_LIBRARY_PATH
export OPENBLAS_NUM_THREADS=1
LOG_FILE="convert_temperature_mesh_"${SLURM_ARRAY_TASK_ID}".log"
echo $z >$LOG_FILE
python3 adjust_temperature_mesh.py ${SLURM_ARRAY_TASK_ID} >> $LOG_FILE
conda deactivate
echo "*** JOB FINISHED ***" >>$LOG_FILE
#sbatch ./convert_layer.sh ${SLURM_ARRAY_TASK_ID}
#LOG_FILE="convert_temperature_mesh.log"
#START_LAYER=268
#LAYERS=268
#echo "*** STARTING JOB ***" >$LOG_FILE
#echo "START PART GEOMETRY"
#module purge
#source /home/kubilay/anaconda3/bin/activate
#conda activate freecad_env
#for z in $(seq $START_LAYER 1 $LAYERS)
#do
#echo $z >>$LOG_FILE
#python3 meshing.py $z >> $LOG_FILE
#done
#echo "END PART GEOMETRY"
#conda deactivate
#echo "START XDMF GEOMETRY"
#module purge
#source /home/kubilay/anaconda3/bin/activate
#conda activate muspectre_env2
#for z in $(seq $START_LAYER 1 $LAYERS)
#do
#echo $z >>$LOG_FILE
#python3 convert_mesh.py $z >> $LOG_FILE
#done
#echo "END TEMPERATURE TRANSFER"
#conda deactivate
#echo "START XDMF GEOMETRY"
#module purge
#source /home/kubilay/anaconda3/bin/activate
#conda activate muspectre_env2
#export LD_LIBRARY_PATH=/home/kubilay/pnetcdf/lib/:$LD_LIBRARY_PATH
#export OPENBLAS_NUM_THREADS=1
##for z in $(seq $START_LAYER 1 $LAYERS)
##do
#echo $z >>$LOG_FILE
#python3 adjust_temperature_mesh.py $z >> $LOG_FILE
##done
#echo "END TEMPERATURE TRANSFER"
#conda deactivate
#echo "*** JOB FINISHED ***" >>$LOG_FILE
#SOURCE_DIRECTORY="/scratch/kubilay/mechanical_model/results/coarse/"
#DEST_DIRECTORY="/work/lammm/kubilay/mechanical_model/"
#cp -r $SOURCE_DIRECTORY $DEST_DIRECTORY

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