run_hea_1q_2.sh
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	#!/bin/bash

	#SBATCH --qos serial
	#SBATCH --nodes 1
	#SBATCH --ntasks 1
	#SBATCH --cpus-per-task 36
	#SBATCH --mem 252000
	#SBATCH --time 71:59:59
	#SBATCH --error=slurm-%j.stderr
	#SBATCH --output=slurm-%j.stdout
	#SBATCH --job-name=mech_model
	#SBATCH --mail-user=recep.kubilay@epfl.ch
	#SBATCH --mail-type=BEGIN,END,FAIL

	set -e

	module purge
	source /home/kubilay/anaconda3/bin/activate
	conda activate muspectre_env2
	export LD_LIBRARY_PATH=/home/kubilay/pnetcdf/lib/:$LD_LIBRARY_PATH

	LOG_FILE="mechanical_model_hea10.log"
	echo "* STARTING JOB *" >$LOG_FILE

	START_LAYER=268
	LAYERS=333
	PROCS=27
	export OPENBLAS_NUM_THREADS=1

	FACTOR=1.0
	TARGET_DIRECTORY="/scratch/kubilay/mechanical_model/results/rate_dependent/factor"_$FACTOR
	mkdir -p $TARGET_DIRECTORY

	for z in $(seq $START_LAYER 1 $LAYERS)
	do
	echo $z >>$LOG_FILE
	mpirun -np 36 python3 -u residual_stress_analysis_hea_1q_2.py $z $PROCS $FACTOR $TARGET_DIRECTORY >>$LOG_FILE
	python3 -u netcdf2h5_hea_1q_2.py $z $FACTOR $TARGET_DIRECTORY >> $LOG_FILE
	done

	conda deactivate

	echo "* JOB FINISHED *" >>$LOG_FILE