run_import_files.sh
3e9a1d30b01fmaster

run_import_files.sh
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			#!/bin/bash

			#SBATCH --qos parallel
			#SBATCH --nodes 2
			#SBATCH --ntasks 4
			#SBATCH --cpus-per-task 36
			#SBATCH --mem-per-cpu 1G
			#SBATCH --time 00:59:00
			#SBATCH --error=slurm-%j.stderr
			#SBATCH --output=slurm-%j.stdout
			#SBATCH --job-name=mech_model

			module purge
			#source /home/kubilay/anaconda3/bin/activate
			#conda activate muspectre_env2
			export LD_LIBRARY_PATH=/home/kubilay/PnetCDF/lib/:$LD_LIBRARY_PATH

			#module load gcc mvapich2
			#module load gcc mvapich2/2.3.4 boost/1.73.0-mpi eigen/3.3.7 fenics/2019.1.0-mpi-openmp python/3.7.7
			#source /scratch/kubilay/virtualenv/${SYS_TYPE}_gcc_mvapich/bin/activate

			echo "* STARTING JOB *"
			module restore am_env

			LOG_FILE="mechanical_model.log"

			which python3 > $LOG_FILE
			which mpirun >> $LOG_FILE
			which srun >> $LOG_FILE

			echo "* STARTING JOB *" >> $LOG_FILE

			srun -n 4 python3 -c "from mpi4py import MPI; comm = MPI.COMM_WORLD; print('srun: rank ', comm.rank, ' of ', comm.size)" >> $LOG_FILE

			srun -n 4 python3 -c "from dolfin import Mesh, XDMFFile, MeshTransformation, Point, HDF5File, FunctionSpace, Function" >> $LOG_FILE

			#mpirun -np 4 python3 -c "from mpi4py import MPI; comm = MPI.COMM_WORLD; print('mpirun: rank ', comm.rank, ' of ', comm.size)" >> $LOG_FILE

			#mpirun -np 4 python3 -c "from dolfin import Mesh, XDMFFile, MeshTransformation, Point, HDF5File, FunctionSpace, Function" >> $LOG_FILE

			srun -n 4 python3 import_files.py >> $LOG_FILE

			#mpirun -np 4 python3 import_files.py >> $LOG_FILE

			#conda deactivate

			echo "* JOB FINISHED *"

			echo "* JOB FINISHED *" >> $LOG_FILE