run_mechanical_model_helvetios.sh
676f9f89ff91master

run_mechanical_model_helvetios.sh
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			#!/bin/bash

			#SBATCH --partition debug
			#SBATCH --ntasks 1
			#SBATCH --cpus-per-task 36
			#SBATCH --mem-per-cpu 2G
			#SBATCH --time 00:59:00
			#SBATCH --error=slurm-%j.stderr
			#SBATCH --output=slurm-%j.stdout
			#SBATCH --job-name=mech_model
			#SBATCH --exclusive

			source /home/kubilay/anaconda3/bin/activate
			conda activate muspectre_env2
			export LD_LIBRARY_PATH=/home/kubilay/pnetcdf/lib/:$LD_LIBRARY_PATH

			#module load gcc mvapich2

			echo "* STARTING JOB *"

			LOG_FILE="mechanical_model.log"

			echo "* STARTING JOB *" > $LOG_FILE

			which python3 > $LOG_FILE
			which mpirun >> $LOG_FILE
			which srun >> $LOG_FILE
			ulimit -a >> $LOG_FILE
			START_LAYER=60
			LAYERS=61

			echo $OPENBLAS_NUM_THREAD >> $LOG_FILE
			export OPENBLAS_NUM_THREADS=1
			echo $OPENBLAS_NUM_THREADS >> $LOG_FILE


			for z in $(seq $START_LAYER $LAYERS)
			do
			echo $z
			conda activate muspectre_env2
			#valgrind --leak-check=full -s mpirun -np 16 python3 residual_stress_analysis.py $z 15 >> $LOG_FILE
			mpirun -n 36 python3 residual_stress_analysis.py $z 35 >>$LOG_FILE
			#mpirun -np 5 amplxe-cl -collect hotspots -r /scratch/kubilay/additive-manufacturing-work/mechanical_model/profiling -- python3 residual_stress_analysis.py 60 4 >> $LOG_FILE
			#python3 netcdf2h5.py $z >> $LOG_FILE
			conda deactivate
			done

			conda deactivate

			echo "* JOB FINISHED *"

			echo "* JOB FINISHED *" >> $LOG_FILE