convert_hea.sh
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	#!/bin/bash

	#SBATCH --qos serial
	#SBATCH --nodes 1
	#SBATCH --ntasks 1
	#SBATCH --cpus-per-task 10
	#SBATCH --mem 230G
	#SBATCH --time 01:00:00
	#SBATCH --error=slurm-%j.stderr
	#SBATCH --output=slurm-%j.stdout
	#SBATCH --job-name=convert_temperature
	#SBATCH --mail-type=NONE
	#SBATCH --mail-user=recep.kubilay@epfl.ch


	LOG_FILE="convert_temperature_mesh.log"
	START_LAYER=268
	LAYERS=268
	echo "* STARTING JOB *" >$LOG_FILE
	echo "START PART GEOMETRY"
	module purge
	source /home/kubilay/anaconda3/bin/activate
	conda activate freecad_env
	#for z in $(seq $START_LAYER 1 $LAYERS)
	#do
	#echo $z >>$LOG_FILE
	#python3 meshing.py $z >> $LOG_FILE
	#done
	echo "END PART GEOMETRY"
	conda deactivate

	echo "START XDMF GEOMETRY"
	module purge
	source /home/kubilay/anaconda3/bin/activate
	conda activate muspectre_env2
	#for z in $(seq $START_LAYER 1 $LAYERS)
	#do
	#echo $z >>$LOG_FILE
	#python3 convert_mesh.py $z >> $LOG_FILE
	#done
	echo "END TEMPERATURE TRANSFER"
	conda deactivate

	echo "START XDMF GEOMETRY"
	module purge
	source /home/kubilay/anaconda3/bin/activate
	conda activate muspectre_env2
	export LD_LIBRARY_PATH=/home/kubilay/pnetcdf/lib/:$LD_LIBRARY_PATH
	export OPENBLAS_NUM_THREADS=1
	for z in $(seq $START_LAYER 1 $LAYERS)
	do
	echo $z >>$LOG_FILE
	python3 -u adjust_temperature_mesh.py $z >> $LOG_FILE
	done
	echo "END TEMPERATURE TRANSFER"
	conda deactivate
	echo "* JOB FINISHED *" >>$LOG_FILE

	#SOURCE_DIRECTORY="/scratch/kubilay/mechanical_model/results/coarse/"
	#DEST_DIRECTORY="/work/lammm/kubilay/mechanical_model/"

	#cp -r $SOURCE_DIRECTORY $DEST_DIRECTORY