This code simulates spent media experiments between two microbial species that interact in different ways. It consists of sets of ordinary differential equations (ODEs). The model has two species and four compounds that can either enhance or inhibit species' growth. Inhibition is implemented as a lengthening of a species' lag phase.
new code after peer-review, more streamlined, parameter sweeps and plotting…
added Python file
README.md file edited
Main file with code added
README.md file added
cd existing_repo git clone https://c4science.ch/diffusion/12144/spentmedia2022.git
Code to simulate model, generate results and make plots for the paper on spent media assays by Dos Santos, Di Martino, Testa, Mitri (2022)
The directory 'src' includes the ipynb file The directory 'figs' is where the figures generated by the code are saved.
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Sara Mitri, Björn Vessman, University of Lausanne
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