This code simulates spent media experiments between two microbial species that interact in different ways. It consists of sets of ordinary differential equations (ODEs). The model has two species and four compounds that can either enhance or inhibit species' growth. Inhibition is implemented as a lengthening of a species' lag phase.
Diffusion spentMedia2022 (master)
Recent Commits
Recent Commits
| Commit | Author | Details | Committed | ||||
|---|---|---|---|---|---|---|---|
| bf21bc7443c9 | smitri | new code after peer-review, more streamlined, parameter sweeps and plotting… | Jun 27 2022 | ||||
| a75ef6cd547c | smitri | added Python file | Mar 3 2022 | ||||
| d8953b886d6c | smitri | README.md file edited | Mar 3 2022 | ||||
| 1dfd29e8bd01 | smitri | Main file with code added | Mar 3 2022 | ||||
| c2a88ccaf9bd | smitri | README.md file added | Mar 3 2022 |
README.md
README.md
spentmedia2022
cd existing_repo git clone https://c4science.ch/diffusion/12144/spentmedia2022.git
Description
Code to simulate model, generate results and make plots for the paper on spent media assays by Dos Santos, Di Martino, Testa, Mitri (2022)
Usage
The directory 'src' includes the ipynb file The directory 'figs' is where the figures generated by the code are saved.
Support
Send an email to sara.mitri@unil.ch
Authors and acknowledgment
Sara Mitri, Björn Vessman, University of Lausanne
License
For open source projects, say how it is licensed.
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