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jupyterhub.docker
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FROM debian:bullseye
MAINTAINER Guillaume Anciaux <guillaume.anciaux@epfl.ch>
ENV LANG C.UTF-8
ENV LC_ALL C.UTF-8
## for apt to be noninteractive
ENV DEBIAN_FRONTEND noninteractive
ENV DEBCONF_NONINTERACTIVE_SEEN true
RUN apt-get -qq update && apt-get install -y cmake cmake-curses-gui build-essential python3-dev libboost-dev libfftw3-dev libgsl-dev gfortran liblapack-dev libopenmpi-dev sharutils git doxygen graphviz python3-pip texlive-latex-base libmumps-dev libscotch-dev && apt -y clean && rm -rf /var/lib/apt/lists/*
RUN apt-get -qq update && apt-get install -y xsltproc ccache bc libgtest-dev && apt -y clean && rm -rf /var/lib/apt/lists/*
RUN apt-get -qq update && apt-get install -y libocct-data-exchange-dev libocct-foundation-dev libocct-modeling-algorithms-dev libocct-modeling-data-dev libocct-ocaf-dev && apt -y clean && rm -rf /var/lib/apt/lists/*
RUN echo "\
deb http://deb.debian.org/debian testing main contrib non-free" >> /etc/apt/sources.list
RUN echo " \
Package: * \
Pin: release a=stable \
Pin-Priority: 800 \
\
Package: * \
Pin: release a=testing \
Pin-Priority: 600 \
" >> /etc/apt/preferences.d/priorities
RUN apt-get -qq update && apt-get install -t testing -y libgmsh-dev
RUN apt-get update && apt -y install nodejs npm git-lfs libgl1-mesa-glx xvfb imagemagick && apt -y clean && rm -rf /var/lib/apt/lists/*
RUN apt-get update && apt -y install python3-pip && apt -y clean && rm -rf /var/lib/apt/lists/*
RUN pip3 install jupyterhub
RUN npm install -g configurable-http-proxy
# RUN mkdir /repos && cd /repos && git clone https://github.com/InsightSoftwareConsortium/itkwidgets.git
# RUN cd /repos/itkwidgets && pip install -e .
RUN pip3 install jupyterlab notebook jupyterlab-git numpy scipy sympy matplotlib pyvista ipyvtklink itkwidgets gmsh akantu meshio pep8 tamaas
RUN pip3 install git+https://gitlab.com/ganciaux/slides.git
RUN pip3 install sphinx breathe sphinx-rtd-theme pytest scipy xmltodict meshio pep8
RUN pip3 install --upgrade setuptools wheel twine
RUN mkdir -p /srv/jupyterhub/
WORKDIR /srv/jupyterhub/
RUN ln -sf /dev/stdout /var/log/jupytherhub.log
RUN mkdir /etc/users && mv /etc/passwd /etc/users && mv /etc/group /etc/users
RUN jupyter nbextension install --py itkwidgets
RUN jupyter nbextension enable itkwidgets --py
CMD ["jupyterhub", "&>>" ,"/var/log/jupyterhub.log"]
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