R12640/bioc-minimal95817f914766master
bioc-minimal
README.md
{{ name }}
{% if project_description %} {{ project_description }} {% endif %}
Introduction
This is a Renku project - basically a git repository with some bells and whistles. You'll find we have already created some useful things like data and notebooks directories and a Dockerfile.
Working with the project
The simplest way to start your project is right from the Renku platform - just click on the Sessions tab and start a new session. This will start an interactive environment right in your browser.
To work with the project anywhere outside the Renku platform, click the Settings tab where you will find the git repo URLs - use git to clone the project on whichever machine you want.
Changing interactive session dependencies
Initially we install a very minimal set of packages to keep the images small. However, you can add python and conda packages in requirements.txt and environment.yml, and R packages to install.R (listed as, for example, install.packages("ggplot2")), to your heart's content. If you need more fine-grained control over your environment, please see the documentation.
Project configuration
Project options can be found in .renku/renku.ini. In this project there is currently only one option, which specifies the default type of environment to open, in this case /rstudio.
Moving forward
Once you feel at home with your project, we recommend that you replace this README file with your own project documentation! Happy data wrangling!