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module_writeFits.cpp
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/**
* @file module_writeFits.c
* @Author Markus Rexroth, EPFL
* @date July 2015
* @version 0,1
* @brief Write fits files
*
* Markus Rexroth, EPFL (changes to function names, variables names, a few function calls etc. to comply with
modular construction of new LENSTOOL). Main function coding etc. was done by:
Author: JPK
Date: April 2001
Write a double array:
wrf_fits(filename,ima,nx,ny,xmin,xmax,ymin,ymax)
wrf_fits_abs(filename,ima,nx,ny,xmin,xmax,ymin,ymax,ra,dec)
Write a int array:
wri_fits(filename,ima,nx,ny,xmin,xmax,ymin,ymax)
wri_fits_abs(filename,ima,nx,ny,xmin,xmax,ymin,ymax,ra,dec)
Update: Johan Richard
Date: 15 May 2013
Write a double 3D array in a datacube:
wrf_cube_fits(filename,cube,nx,ny,nz,xmin,xmax,ymin,ymax,lmin,lmax)
wrf_cube_fits_abs(filename,cube,nx,ny,nz,xmin,xmax,ymin,ymax,lmin,lmax,ra,dec)
*/
/// Include
///==========================================================================================================
#include <string.h>
#include <stdio.h>
#include <stdlib.h>
#include "fitsio.h"
#include "module_writeFits.hpp"
/// Functions
///==========================================================================================================
void module_writeFits(std::string path, std::string filename, int ii, type_t *map, const struct runmode_param* runmode, const struct grid_param* frame, type_t ra, type_t dec ){
std::string file;
file = path;
file.append("/");
file.append(filename);
file.append("_");
std::ostringstream ss;
ss << ii;
file.append(ss.str());
file.append(".fits");
ss.clear();
char file_char[file.length()+1];
strcpy(file_char,file.c_str());
if(ra == 0. and dec == 0.)
module_writeFits_Image(file_char,map,runmode->amplif_gridcells,runmode->amplif_gridcells,frame->xmin,frame->xmax,frame->ymin,frame->ymax);
else
module_writeFits_ImageAbsoluteCoordinates(file_char,map,runmode->amplif_gridcells,runmode->amplif_gridcells,frame->xmin,frame->xmax,frame->ymin,frame->ymax,ra,dec);
}
/** @brief CPU Print error message
*
* @param status status
*/
// Print error message
void printerror( int status)
{
if (status)
{
fits_report_error(stderr, status); /* print error report */
exit( status ); /* terminate the program, returning error status */
}
}
/** @brief CPU Create a FITS primary array containing a 2-D image
* Write in double array
*
* @param filename name of fits file
* @param ima images 2D array
* @param nx x dimension
* @param ny y dimension
* @param xmin x min value
* @param xmax x max value
* @param ymin y min value
* @param ymax y max value
*/
int module_writeFits_Image(char *filename, double *ima, int nx,int ny, double xmin,double xmax,double ymin,double ymax)
{
fitsfile *fptr; /* pointer to the FITS file, defined in fitsio.h */
int status, ii, jj, k;
long fpixel, nelements;
float crval1,crpix1,cdelt1;
float crval2,crpix2,cdelt2;
float bzero=0.,bscale=1.;
char cunit[10];
char ctype[10];
char origin[10];
float *p_ima;
/* initialize FITS image parameters */
int bitpix=FLOAT_IMG;
long naxis=2; /* 2-dimensional image */
long naxes[2] = { nx, ny }; /* image is nx pixels wide by ny rows */
printf("WRITE: FITS file: %s[%d,%d] (%.2lf:%.2lf,%.2lf:%.2lf)\n",
filename,nx,ny,xmin,xmax,ymin,ymax);
/* Transform the 2D array to a 1D array */
p_ima=(float *)malloc((unsigned) (nx*ny)*sizeof(float));
k=0;
for (jj=0;jj<ny;jj++)
for (ii=0;ii<nx;ii++)
{
p_ima[k]=(float)ima[jj*nx+ii];
k++;
}
remove(filename); /* Delete old file if it already exists */
status = CREATE_DISK_FILE; /* initialize status before calling fitsio routines */
if (fits_create_file(&fptr, filename, &status)) /* create new FITS file */
printerror( status ); /* call printerror if error occurs */
if ( fits_create_img(fptr, bitpix, naxis, naxes, &status) )
printerror( status );
fpixel = 1; /* first pixel to write */
nelements = naxes[0] * naxes[1]; /* number of pixels to write */
crval1=xmin;
crpix1=1;
cdelt1=(xmax-xmin)/(nx-1);
crval2=ymin;
crpix2=1;
cdelt2=(ymax-ymin)/(ny-1);
strcpy(cunit,"arcsec");
strcpy(ctype,"LINEAR");
strcpy(origin,"JPK-SOFT");
/* write the array to the FITS file */
if ( fits_write_img(fptr, TFLOAT, fpixel, nelements, p_ima, &status) )
printerror( status );
/* write another optional keyword to the header */
if ( fits_update_key(fptr, TFLOAT, "BZERO", &bzero, "BZERO", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "BSCALE", &bscale, "BSCALE", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRVAL1", &crval1, "CRVAL1", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRPIX1", &crpix1, "CRPIX1", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CDELT1", &cdelt1, "CDELT1", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT1", &cunit, "CUNIT1", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE1", &ctype, "CTYPE1", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRVAL2", &crval2, "CRVAL2", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRPIX2", &crpix2, "CRPIX2", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CDELT2", &cdelt2, "CDELT2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT2", &cunit, "CUNIT2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE2", &ctype, "CTYPE2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "ORIGIN", &origin, "ORIGIN", &status) )
printerror( status );
if ( fits_write_date(fptr, &status) )
printerror( status );
if ( fits_close_file(fptr, &status) ) /* close the file */
printerror( status );
return 0;
}
/** @brief CCreate a FITS primary array containing a 2-D image
* Write in double array and in absolute coordinates
* EJ 27/12/05 Modified Keyword dectype="DEC---TAN"
* NOT IMPLEMENTED YET
*
* @param filename name of fits file
* @param ima images 2D array
* @param nx x dimension
* @param ny y dimension
* @param xmin x min value
* @param xmax x max value
* @param ymin y min value
* @param ymax y max value
* @param ra ra
* @param dec dec
*/
int module_writeFits_ImageAbsoluteCoordinates(char *filename, double *ima, int nx,int ny, double xmin,double xmax,double ymin,double ymax, double ra,double dec)
{
fitsfile *fptr; /* pointer to the FITS file, defined in fitsio.h */
int status, ii, jj, k;
long fpixel, nelements;
double crval1,crpix1,cdelt1;
double crval2,crpix2,cdelt2;
double bzero=0.,bscale=1.,equinox;
char cunit[10];
char system[10];
char ratype[10];
char dectype[10];
char origin[10];
float *p_ima;
/* initialize FITS image parameters */
int bitpix=FLOAT_IMG;
long naxis=2; /* 2-dimensional image */
long naxes[2] = { nx, ny }; /* image is nx pixels wide by ny rows */
printf("WRITE: FITS file: %s[%d,%d] (%.2lf:%.2lf %.2lf:%.2lf)\n",
filename,nx,ny,xmin,xmax,ymin,ymax);
/* Transform the 2D array to a 1D array */
p_ima=(float *)malloc((unsigned) (nx*ny)*sizeof(float));
k=0;
for (jj=0;jj<ny;jj++)
for (ii=0;ii<nx;ii++)
{
p_ima[k] =(float)ima[jj*nx+ii];
k++;
}
remove(filename); /* Delete old file if it already exists */
status = 0; /* initialize status before calling fitsio routines */
if (fits_create_file(&fptr, filename, &status)) /* create new FITS file */
printerror( status ); /* call printerror if error occurs */
if ( fits_create_img(fptr, bitpix, naxis, naxes, &status) )
printerror( status );
fpixel = 1; /* first pixel to write */
nelements = naxes[0] * naxes[1]; /* number of pixels to write */
crval1=ra;
crpix1=-(nx - 1)*xmin/(xmax-xmin) + 1; // nx-1 because if xmin=0, xmax=3, nx=4
cdelt1=-(xmax-xmin)/(nx-1)/3600; // then delta=(xmax - xmin) / (nx-1)
crval2=dec;
crpix2=-(ny - 1)*ymin/(ymax-ymin) + 1;
cdelt2=(ymax-ymin)/(ny-1)/3600;
strcpy(cunit,"deg");
strcpy(origin,"JPK-SOFT");
equinox=2000.0;
strcpy(cunit,"deg");
strcpy(origin,"JPK-SOFT");
strcpy(system,"FK5");
strcpy(ratype,"RA---TAN");
strcpy(dectype,"DEC--TAN");
/* write the array to the FITS file */
if ( fits_write_img(fptr, TFLOAT, fpixel, nelements, p_ima, &status) )
printerror( status );
/* write another optional keyword to the header */
if ( fits_update_key(fptr, TDOUBLE, "BZERO", &bzero, "BZERO", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "BSCALE", &bscale, "BSCALE", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "EQUINOX", &equinox, "EQUINOX", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "RADECSYS", &system, "RADECSYS", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE1", &ratype, "CTYPE1", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "CRVAL1", &crval1, "CRVAL1", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "CRPIX1", &crpix1, "CRPIX1", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "CDELT1", &cdelt1, "CDELT1", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT1", &cunit, "CUNIT1", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE2", &dectype, "CTYPE2", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "CRVAL2", &crval2, "CRVAL2", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "CRPIX2", &crpix2, "CRPIX2", &status) )
printerror( status );
if ( fits_update_key(fptr, TDOUBLE, "CDELT2", &cdelt2, "CDELT2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT2", &cunit, "CUNIT2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "ORIGIN", &origin, "ORIGIN", &status) )
printerror( status );
if ( fits_write_date(fptr, &status) )
printerror( status );
if ( fits_close_file(fptr, &status) )/* close the file */
printerror( status );
return 0;
}
/** @brief Write fits cube
*
* @param filename name of fits file
* @param cube 3D array
* @param nx x dimension
* @param ny y dimension
* @param nz z dimension
* @param xmin x min value
* @param xmax x max value
* @param ymin y min value
* @param ymax y max value
* @param lmin l min value
* @param lmax l max value
*/
int module_writeFits_cube(char *filename, double ***cube, int nx,int ny, int nz, double xmin,double xmax,double ymin,double ymax, double lmin, double lmax)
{
fitsfile *fptr; /* pointer to the FITS file, defined in fitsio.h */
int status, ii, jj, kk, k;
long fpixel, nelements;
float crval1,crpix1,cdelt1;
float crval2,crpix2,cdelt2;
float crval3,crpix3,cdelt3;
float bzero=0.,bscale=1.;
char cunit[10];
char cunitw[10];
char ctype[10];
char origin[10];
float *p_ima;
/* initialize FITS image parameters */
int bitpix=FLOAT_IMG;
long naxis=3; /* 3-dimensional image */
long naxes[3] = { nx, ny, nz }; /* image is nx pixels wide by ny rows by nz slices*/
printf("WRITE: FITS file: %s[%d,%d,%d] (%.2lf:%.2lf,%.2lf:%.2lf,%.2lf:%.2lf)\n",
filename,nx,ny,nz,xmin,xmax,ymin,ymax,lmin,lmax);
/* Transform the 3D array to a 1D array */
p_ima=(float *)malloc((unsigned) (nx*ny*nz)*sizeof(float));
k=0;
for (kk=0;kk<nz;kk++)
for (jj=0;jj<ny;jj++)
for (ii=0;ii<nx;ii++)
{
p_ima[k]=(float)cube[jj][ii][kk];
k++;
}
remove(filename); /* Delete old file if it already exists */
status = CREATE_DISK_FILE; /* initialize status before calling fitsio routines */
if (fits_create_file(&fptr, filename, &status)) /* create new FITS file */
printerror( status ); /* call printerror if error occurs */
if ( fits_create_img(fptr, bitpix, naxis, naxes, &status) )
printerror( status );
fpixel = 1; /* first pixel to write */
nelements = naxes[0] * naxes[1] * naxes[2]; /* number of pixels to write */
crval1=xmin;
crpix1=1;
cdelt1=(xmax-xmin)/(nx-1);
crval2=ymin;
crpix2=1;
cdelt2=(ymax-ymin)/(ny-1);
crval3=lmin;
crpix3=1;
cdelt3=(lmax-lmin)/(nz-1);
strcpy(cunit,"arcsec");
strcpy(cunitw,"Angstroms");
strcpy(ctype,"LINEAR");
strcpy(origin,"JPK-SOFT");
/* write the array to the FITS file */
if ( fits_write_img(fptr, TFLOAT, fpixel, nelements, p_ima, &status) )
printerror( status );
/* write another optional keyword to the header */
if ( fits_update_key(fptr, TFLOAT, "BZERO", &bzero, "BZERO", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "BSCALE", &bscale, "BSCALE", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRVAL1", &crval1, "CRVAL1", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRPIX1", &crpix1, "CRPIX1", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CDELT1", &cdelt1, "CDELT1", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT1", &cunit, "CUNIT1", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE1", &ctype, "CTYPE1", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRVAL2", &crval2, "CRVAL2", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRPIX2", &crpix2, "CRPIX2", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CDELT2", &cdelt2, "CDELT2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT2", &cunit, "CUNIT2", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE2", &ctype, "CTYPE2", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRVAL3", &crval3, "CRVAL3", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CRPIX3", &crpix3, "CRPIX3", &status) )
printerror( status );
if ( fits_update_key(fptr, TFLOAT, "CDELT3", &cdelt3, "CDELT3", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CUNIT3", &cunitw, "CUNIT3", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "CTYPE3", &ctype, "CTYPE3", &status) )
printerror( status );
if ( fits_update_key(fptr, TSTRING, "ORIGIN", &origin, "ORIGIN", &status) )
printerror( status );
if ( fits_write_date(fptr, &status) )
printerror( status );
if ( fits_close_file(fptr, &status) ) /* close the file */
printerror( status );
return 0;
}

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