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Thu, Dec 12, 01:12

allocation.cpp
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//
// This file is part of lenstoolhpc
// authors: gilles.fourestey@epfl.ch
//
#include <math.h>
#include <cuda_runtime.h>
#include "module_cosmodistances.hpp"
#include "module_readParameters.hpp"
#include "allocation.hpp"
void PotentialSOAAllocation(Potential_SOA **lens_SOA, const int nhalos)
{
Potential_SOA* p;
#if (defined __WITH_GPU) && (defined __UNIFIED_MEM)
#warning "Using unified memory"
cudaError error = cudaMallocManaged(lens_SOA, sizeof(Potential_SOA));
//if (error == 0) printf("Allocation error\n");
p = *lens_SOA;
cudaMallocManaged(&(p->type), nhalos*sizeof(int));
cudaMallocManaged(&p->position_x , nhalos*sizeof(size_t));
cudaMallocManaged(&p->position_y , nhalos*sizeof(size_t));
cudaMallocManaged(&p->b0 , nhalos*sizeof(size_t));
cudaMallocManaged(&p->ellipticity_angle , nhalos*sizeof(size_t));
cudaMallocManaged(&p->ellipticity , nhalos*sizeof(size_t));
cudaMallocManaged(&p->ellipticity_potential, nhalos*sizeof(size_t));
cudaMallocManaged(&p->rcore , nhalos*sizeof(size_t));
cudaMallocManaged(&p->rcut , nhalos*sizeof(size_t));
cudaMallocManaged(&p->vdisp , nhalos*sizeof(size_t));
cudaMallocManaged(&p->z , nhalos*sizeof(size_t));
cudaMallocManaged(&p->anglecos , nhalos*sizeof(size_t));
cudaMallocManaged(&p->anglesin , nhalos*sizeof(size_t));
cudaMallocManaged(&p->SOA_index , nhalos*sizeof(int));
//printf("Unified memory: %p\n", p->type); fflush(stdout);
#else
//p = *lens_SOA;
//printf("p = %p, %p\n", lens_SOA, p);
*lens_SOA = (Potential_SOA*) malloc(sizeof(Potential_SOA));
p = *lens_SOA;
//printf("p = %p, %p\n", lens_SOA, p);
p->type = (int*) malloc(sizeof(int)*nhalos);
p->position_x = (double*) malloc(sizeof(double)*nhalos);
p->position_y = (double*) malloc(sizeof(double)*nhalos);
p->b0 = (double*) malloc(sizeof(double)*nhalos);
p->ellipticity_angle = (double*) malloc(sizeof(double)*nhalos);
p->ellipticity = (double*) malloc(sizeof(double)*nhalos);
p->ellipticity_potential = (double*) malloc(sizeof(double)*nhalos);
p->rcore = (double*) malloc(sizeof(double)*nhalos);
p->rcut = (double*) malloc(sizeof(double)*nhalos);
p->vdisp = (double*) malloc(sizeof(double)*nhalos);
p->z = (double*) malloc(sizeof(double)*nhalos);
p->anglecos = (double*) malloc(sizeof(double)*nhalos);
p->anglesin = (double*) malloc(sizeof(double)*nhalos);
p->SOA_index = (int*) malloc(sizeof(int)*nhalos);
//lens_SOA->position_x = new type_t[nhalos];
//lens_SOA->position_y = new type_t[nhalos];
//lens_SOA->b0 = new type_t[nhalos];
//lens_SOA->ellipticity_angle = new type_t[nhalos];
//lens_SOA->ellipticity = new type_t[nhalos];
//lens_SOA->ellipticity_potential = new type_t[nhalos];
//lens_SOA->rcore = new type_t[nhalos];
//lens_SOA->rcut = new type_t[nhalos];
//lens_SOA->z = new type_t[nhalos];
//lens_SOA->anglecos = new type_t[nhalos];
//lens_SOA->anglesin = new type_t[nhalos];
#endif
}
void PotentialSOADeallocation(Potential_SOA *lens_SOA)
{
#if (defined __WITH_GPU) && (defined __UNIFIED_MEM)
#warning "Using unified memory"
cudaFree(lens_SOA->type);
cudaFree(lens_SOA->position_x);
cudaFree(lens_SOA->position_y);
cudaFree(lens_SOA->b0);
cudaFree(lens_SOA->ellipticity_angle);
cudaFree(lens_SOA->ellipticity);
cudaFree(lens_SOA->ellipticity_potential);
cudaFree(lens_SOA->rcore);
cudaFree(lens_SOA->rcut);
cudaFree(lens_SOA->vdisp);
cudaFree(lens_SOA->z);
cudaFree(lens_SOA->anglecos);
cudaFree(lens_SOA->anglesin);
cudaFree(lens_SOA->SOA_index);
#else
free(lens_SOA->type);
free(lens_SOA->position_x);
free(lens_SOA->position_y);
free(lens_SOA->b0);
free(lens_SOA->ellipticity_angle);
free(lens_SOA->ellipticity);
free(lens_SOA->ellipticity_potential);
free(lens_SOA->rcore);
free(lens_SOA->rcut);
free(lens_SOA->z);
free(lens_SOA->anglecos);
free(lens_SOA->anglesin);
free(lens_SOA);
#endif
}
void read_potentialSOA_ntypes(std::string infile, int N_type[])
{
int ind = 0;
std::string first, second, third, line1, line2;
std::ifstream IN(infile.c_str(), std::ios::in);
//First sweep throught the runmode file to find N_type (number of types)
if ( IN )
{
while(std::getline(IN,line1))
{
std::istringstream read1(line1); // create a stream for the line
read1 >> first;
if (!strncmp(first.c_str(), "potent", 6)) // Read in potential
{
while(std::getline(IN,line2))
{
std::istringstream read2(line2);
read2 >> second >> third;
if (strcmp(second.c_str(), "end") == 0) // Move to next potential and initialize it
{
break; // Break while loop and move to next potential
}
if ( !strcmp(second.c_str(), "profil") || // Get profile
!strcmp(second.c_str(), "profile") )
{
if(!strcmp(third.c_str(), "PIEMD") ||
!strcmp(third.c_str(), "1") )
{
ind=atoi(third.c_str());
N_type[ind] += 1;
}
else if(!strcmp(third.c_str(), "NFW") ||
!strcmp(third.c_str(), "2") )
{
ind=atoi(third.c_str());
N_type[ind] += 1;
}
else if(!strcmp(third.c_str(), "SIES") ||
!strcmp(third.c_str(), "3") )
{
ind=atoi(third.c_str());
N_type[ind] += 1;
}
else if(!strncmp(third.c_str(), "point", 5) ||
!strcmp(third.c_str(), "4") )
{
ind=atoi(third.c_str());
N_type[ind] += 1;
}
else if(!strcmp(third.c_str(), "SIE") ||
!strcmp(third.c_str(), "5") )
{
ind=atoi(third.c_str());
N_type[ind] += 1;
}
else if(!strcmp(third.c_str(), "8") ) //PIEMD
{
ind=atoi(third.c_str());
N_type[ind] += 1;
}
else if(!strcmp(third.c_str(), "81") ) //PIEMD81
{
ind=atoi(third.c_str());
N_type[ind] += 1;
//std::cerr << "Type First: " << ind << std::endl;
}
else if(!strcmp(third.c_str(), "14") ) //PIEMD81
{
ind=atoi(third.c_str());
N_type[ind] += 1;
//std::cerr << "Type First: " << ind << std::endl;
}
else{
printf( "ERROR: Unknown Lensprofile, Emergency stop\n");
exit (EXIT_FAILURE);
}
}
}
}
}
}
IN.close();
IN.clear();
IN.open(infile.c_str(), std::ios::in);
}
void module_readParameters_PotentialSOA_local(std::string infile, Potential_SOA *lens_SOA, int nhalos, int n_tot_halos, cosmo_param cosmology)
{
//printf("lenses_SOA = %p\n", lens_SOA); fflush(stdout);
//printf("lenses_SOA->type = %p\n", lens_SOA->type); fflush(stdout);
//
double DTR=acos(-1.)/180.; /* 1 deg in rad = pi/180 */
//
double core_radius_kpc = 0.;
double cut_radius_kpc = 0.;
int N_type [100];
int Indice_type[100];
int ind, initial_index;
Potential lens_temp;
//Used to store the initial index of lenses
initial_index = 0;
//Init of N_types and Indice_type (Number of lenses of a certain type)
for(int i=0;i < 100; ++i){
N_type[i] = 0;
Indice_type[i] = 0;
}
//First sweep through the runmode file to find N_type (number of types)
read_potentialSOA_ntypes(infile, N_type);
//Calcuting starting points for each type in lens array
for(int i=1;i < 100; ++i)
{
Indice_type[i] = N_type[i]+Indice_type[i-1];
//printf("%d %d \n ",N_type[i], Indice_type[i]);
}
std::string first, second, third, line1, line2;
std::ifstream IN(infile.c_str(), std::ios::in);
if(IN){
while(std::getline(IN,line1))
{
first = "";
std::istringstream read1(line1); // create a stream for the line
read1 >> first;
//std::cerr << " 1: " << first << std::endl;
if (!strncmp(first.c_str(), "potent", 6)) // Read in potential
{
lens_temp.position.x = lens_temp.position.y = 0.;
lens_temp.ellipticity = 0;
lens_temp.ellipticity_potential = 0.;
lens_temp.ellipticity_angle = 0.;
lens_temp.vdisp = 0.;
lens_temp.rcut = 0.;
lens_temp.rcore = 0;
lens_temp.b0 = 0;
core_radius_kpc = 0.;
cut_radius_kpc = 0;
lens_temp.weight = 0;
lens_temp.rscale = 0;
lens_temp.exponent = 0;
lens_temp.alpha = 0.;
lens_temp.einasto_kappacritic = 0;
lens_temp.z = 0;
while(std::getline(IN,line2))
{
//Init temp potential
std::istringstream read2(line2);
read2 >> second >> third;
//std::cerr << line2 << std::endl;
//std::cerr << " 2: " << second << std::endl;
if (strcmp(second.c_str(), "end") == 0) // Move to next potential and initialize it
{
if ( lens_temp.z == 0. ) // Check if redshift from current halo was initialized
{
fprintf(stderr, "ERROR: No redshift defined for potential at position x: %f and y: %f \n", lens_temp.position.x , lens_temp.position.y);
exit(-1);
}
break; // Break while loop and move to next potential
}
//Find profile
if ( !strcmp(second.c_str(), "profil") || // Get profile
!strcmp(second.c_str(), "profile") )
{
lens_temp.type=atoi(third.c_str());
//std::cerr << lens_temp.type << std::endl;
}
else if (!strcmp(second.c_str(), "name")) // Get name of lens
{
sscanf(third.c_str(),"%s",lens_temp.name);
}
else if (!strcmp(second.c_str(), "x_centre") || // Get x center
!strcmp(second.c_str(), "x_center") )
{
lens_temp.position.x=atof(third.c_str());
//std::cout << "PositionX : " << std::setprecision(15) << lens_temp.position.x << std::endl;
}
else if (!strcmp(second.c_str(), "y_centre") || // Get y center
!strcmp(second.c_str(), "y_center") )
{
lens_temp.position.y=atof(third.c_str());
}
else if ( !strcmp(second.c_str(), "ellipticitymass") || !strcmp(second.c_str(), "ellipticity") || !strcmp(second.c_str(), "ellipticite") ) // Get ellipticity
{
lens_temp.ellipticity=atof(third.c_str());
//lens_temp.ellipticity=lens_temp.ellipticity/3.;
}
else if (!strcmp(second.c_str(), "ellipticity_angle") || !strcmp(second.c_str(), "angle_pos")) // Get ellipticity angle
{
lens_temp.ellipticity_angle=atof(third.c_str());
lens_temp.ellipticity_angle *= DTR;
}
else if ( !strcmp(second.c_str(), "rcore") || !strcmp(second.c_str(), "core_radius")) // Get core radius
{
lens_temp.rcore=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "rcut") || !strcmp(second.c_str(), "cut_radius")) // Get cut radius
{
lens_temp.rcut=atof(third.c_str());
}
else if ( !strcmp(second.c_str(), "core_radius_kpc")) // Get core radius
{
core_radius_kpc=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "cut_radius_kpc")) // Get cut radius
{
cut_radius_kpc=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "NFW_rs") || // Get scale radius of NFW
!strcmp(second.c_str(), "rscale"))
{
lens_temp.rscale=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "exponent") ) // Get exponent
{
lens_temp.exponent=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "alpha") ) // Get alpha
{
lens_temp.alpha=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "einasto_kappacritic") || // Get critical kappa
!strcmp(second.c_str(), "kappacritic"))
{
lens_temp.einasto_kappacritic=atof(third.c_str());
}
else if (!strcmp(second.c_str(), "z_lens")) // Get redshift
{
lens_temp.z=atof(third.c_str());
//std::cerr << lens_temp.z << std::endl;
}
else if (!strcmp(second.c_str(), "v_disp")) // Get Dispersion velocity
{
lens_temp.vdisp=atof(third.c_str());
//std::cerr << "vdisp : "<< third << " " << lens_temp.vdisp << std::endl;
}
else if ( !strncmp(second.c_str(), "virial_mass", 6) || // Get virial mass
!strcmp(second.c_str(), "masse") ||
!strcmp(second.c_str(), "m200") ||
!strcmp(second.c_str(), "mass") )
{
lens_temp.weight=atof(third.c_str());
}
} // closes inner while loop
// Converting distance in kpc to arcsec.
double d1 = d0/cosmology.h*module_cosmodistances_observerObject(lens_temp.z,cosmology);
//printf(" D1 HPC : %f %f %f %f\n",d1, d0,cosmology.h,lens_temp.z );
// Set rcore value in kpc or in arcsec.
if ( core_radius_kpc != 0. )
lens_temp.rcore = core_radius_kpc / d1;
else
core_radius_kpc = lens_temp.rcore * d1;
// Set rcut value in kpc or in arcsec.
if ( core_radius_kpc != 0. )
lens_temp.rcore = core_radius_kpc / d1;
else
core_radius_kpc = lens_temp.rcore * d1;
// Set rcut value in kpc or in arcsec.
if ( cut_radius_kpc != 0. )
{
//std::cerr << "d1 " << d1 << std::endl;
lens_temp.rcut = cut_radius_kpc / d1;}
else
cut_radius_kpc = lens_temp.rcut * d1;
//Calculate parameters like b0, potential ellipticity and anyother parameter depending on the profile
module_readParameters_calculatePotentialparameter(&lens_temp);
//assign value to SOA
//std::cerr << "Type + indice :" << lens_temp.type << Indice_type[lens_temp.type-1] << std::endl;
//printf("%p %p\n", lens_SOA, lens_SOA->type[0]);
if(Indice_type[lens_temp.type-1] <nhalos)
{
ind = Indice_type[lens_temp.type-1];
//std::cerr<< ind << std::endl;
lens_SOA->type[ind] = lens_temp.type;
lens_SOA->position_x[ind] = lens_temp.position.x;
lens_SOA->position_y[ind] = lens_temp.position.y;
lens_SOA->b0[ind] = lens_temp.b0;
lens_SOA->vdisp[ind] = lens_temp.vdisp;
lens_SOA->ellipticity_angle[ind] = lens_temp.ellipticity_angle;
lens_SOA->ellipticity[ind] = lens_temp.ellipticity;
lens_SOA->ellipticity_potential[ind] = lens_temp.ellipticity_potential;
lens_SOA->vdisp[ind] = lens_temp.vdisp;
lens_SOA->rcore[ind] = lens_temp.rcore;
lens_SOA->rcut[ind] = lens_temp.rcut;
lens_SOA->z[ind] = lens_temp.z;
lens_SOA->anglecos[ind] = cos(lens_temp.ellipticity_angle);
lens_SOA->anglesin[ind] = sin(lens_temp.ellipticity_angle);
//Store new index for bayes map purposes
lens_SOA->SOA_index[initial_index] = ind;
//
initial_index += 1;
Indice_type[lens_temp.type-1] += 1;
}
} // closes if loop
} // closes while loop
}
IN.close();
}

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