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Tue, May 28, 03:59

Stats.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package deconvolution;
import java.awt.BorderLayout;
import java.awt.Dimension;
import java.io.File;
import java.util.ArrayList;
import javax.swing.BorderFactory;
import javax.swing.JFrame;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import bilib.table.CustomizedColumn;
import bilib.table.CustomizedTable;
import bilib.tools.NumFormat;
import deconvolutionlab.Constants;
import deconvolutionlab.Lab;
import deconvolutionlab.monitor.Monitors;
import deconvolutionlab.system.SystemUsage;
import signal.RealSignal;
import signal.SignalCollector;
public class Stats {
public enum Mode {NO, SHOW, SAVE, SHOWSAVE};
private CustomizedTable table;
private float[] statsInput;
private Mode mode;
private boolean embedded = false;
public Stats(Mode mode) {
this.mode = mode;
ArrayList<CustomizedColumn> columns = new ArrayList<CustomizedColumn>();
columns.add(new CustomizedColumn("Iterations", String.class, 100, false));
columns.add(new CustomizedColumn("Mean", String.class, 100, false));
columns.add(new CustomizedColumn("Minimum", String.class, 100, false));
columns.add(new CustomizedColumn("Maximum", String.class, 100, false));
columns.add(new CustomizedColumn("Stdev", String.class, 100, false));
columns.add(new CustomizedColumn("Energy", String.class, 100, false));
columns.add(new CustomizedColumn("Time", String.class, 100, false));
columns.add(new CustomizedColumn("Memory", String.class, 100, false));
columns.add(new CustomizedColumn("Signal", String.class, 100, false));
columns.add(new CustomizedColumn("PSNR", String.class, 100, false));
columns.add(new CustomizedColumn("SNR", String.class, 100, false));
columns.add(new CustomizedColumn("Residu", String.class, 100, false));
table = new CustomizedTable(columns, true);
}
public void setEmbeddedInFrame(boolean embedded) {
this.embedded = embedded;
}
/**
* Show the stats table in a frame if it is not yet embedded in another frame.
*/
public void show() {
if (embedded)
return;
if (mode == Mode.SHOW || mode == Mode.SHOWSAVE) {
JFrame frame = new JFrame("Stats");
frame.getContentPane().add(getPanel());
frame.pack();
Lab.setVisible(frame);
}
}
public void save(Monitors monitors, String path) {
if (mode == Mode.SAVE || mode == Mode.SHOWSAVE) {
String filename = path + File.separator + "stats.csv";
monitors.log("Stats save " + filename);
table.saveCSV(filename);
}
}
public void addInput(RealSignal x) {
statsInput = x.getStats();
table.append(compute(x, "In: " + x.name, "", "", "", ""));
}
public void add(RealSignal x, int iterations) {
table.append(compute(x, ""+iterations, "", "", "", ""));
}
public void add(RealSignal x, int iterations, String time, String psnr, String snr, String residu) {
table.append(compute(x, ""+iterations, time, psnr, snr, residu));
}
public void addOutput(RealSignal x, String algo, String time, String psnr, String snr, String residu) {
table.append(compute(x, "Out: " + algo, time, psnr, snr, residu));
}
public String[] compute(RealSignal x, String iterations, String time, String psnr, String snr, String residu) {
float params[] = null;
if (x != null)
params = x.getStats();
String[] row = new String[12];
row[0] = iterations;
row[1] = (params == null ? "-" : "" + params[0]);
row[2] = (params == null ? "-" : "" + params[1]);
row[3] = (params == null ? "-" : "" + params[2]);
row[4] = (params == null ? "-" : "" + params[3]);
row[5] = (params == null ? "-" : "" + params[5]);
row[6] = time;
row[7] = NumFormat.bytes(SystemUsage.getHeapUsed());
row[8] = SignalCollector.sumarize();
row[9] = psnr;
row[10] = snr;
row[11] = residu;
return row;
}
public JPanel getPanel() {
JScrollPane scroll = new JScrollPane(table);
scroll.setPreferredSize(new Dimension(Constants.widthGUI, 400));
JPanel panel = new JPanel(new BorderLayout());
panel = new JPanel(new BorderLayout());
panel.add(scroll);
panel.setBorder(BorderFactory.createEtchedBorder());
return panel;
}
public String toStringStats() {
if (mode == Mode.SHOW)
return "show";
if (mode == Mode.SAVE)
return "save";
if (mode == Mode.SHOWSAVE)
return "show and save";
return "no";
}
public Mode getMode() {
return mode;
}
public float[] getStatsInput() {
return statsInput;
}
}

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