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RichardsonLucyPanel.java
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Mon, Jul 22, 20:37

RichardsonLucyPanel.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package deconvolution.algorithm;
import javax.swing.JPanel;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import bilib.component.GridPanel;
import bilib.component.SpinnerRangeInteger;
import deconvolution.Command;
import deconvolutionlab.Config;
public class RichardsonLucyPanel extends AbstractAlgorithmPanel implements ChangeListener {
private SpinnerRangeInteger spnIter = new SpinnerRangeInteger(10, 1, 99999, 1);
private RichardsonLucy algo = new RichardsonLucy(10);
@Override
public JPanel getPanelParameters() {
double[] params = algo.getDefaultParameters();
GridPanel pn = new GridPanel(false);
pn.place(1, 0, "<html><span \"nowrap\"><b>Iterations</b></span></html>");
pn.place(1, 1, "<html><span \"nowrap\"><i>N</i></span></html>");
pn.place(1, 2, spnIter);
Config.register("Algorithm." + algo.getShortnames()[0], "iterations", spnIter, params[0]);
spnIter.addChangeListener(this);
return pn;
}
@Override
public String getCommand() {
return "" + spnIter.get();
}
@Override
public void stateChanged(ChangeEvent e) {
Command.command();
}
@Override
public String getName() {
return algo.getName();
}
@Override
public String[] getShortnames() {
return algo.getShortnames();
}
@Override
public String getDocumentation() {
String s = "";
s += "<h1>" + getName() + "</h1>";
s += "<h2> Shortname: RL</h2>";
s += "<p>This is the well-known Richardson-Lucy algorithm.</p>";
s += "<p>It is an iterative with a slow convergence, it has only one parameter to tune: the maximum number of iterations</p>";
s += "<p>RL is well appropiate for dominant Poison noise.</p>";
s += "<p>It is a maximum likelihood estimator (MLE).</p>";
s += "<p>Warning: the input image should have only positive values</p>";
return s;
}
}

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