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VanCittertPanel.java
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Sat, May 18, 12:33

VanCittertPanel.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package deconvolution.algorithm;
import javax.swing.JPanel;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import bilib.component.GridPanel;
import bilib.component.SpinnerRangeDouble;
import bilib.component.SpinnerRangeInteger;
import bilib.tools.NumFormat;
import deconvolution.Command;
import deconvolutionlab.Config;
import deconvolutionlab.Constants;
public class VanCittertPanel extends AlgorithmPanel implements ChangeListener {
private SpinnerRangeInteger spnIter = new SpinnerRangeInteger(10, 1, 99999, 1);
private SpinnerRangeDouble spnStep = new SpinnerRangeDouble(1, 0, 2, 0.1);
private VanCittert algo = new VanCittert(10, 1);
@Override
public JPanel getPanelParameters() {
double[] params = algo.getDefaultParameters();
spnIter.setPreferredSize(Constants.dimParameters);
spnStep.setPreferredSize(Constants.dimParameters);
GridPanel pn = new GridPanel(false);
pn.place(1, 0, "<html><span \"nowrap\"><b>Iterations</b></span></html>");
pn.place(1, 1, "<html><span \"nowrap\"><i>N</i></span></html>");
pn.place(1, 2, spnIter);
pn.place(1, 3, "<html><span \"nowrap\">Step <i>&gamma;</i></span></html>");
pn.place(1, 4, spnStep);
Config.register("Algorithm." + algo.getShortnames()[0], "iterations", spnIter, params[0]);
Config.register("Algorithm." + algo.getShortnames()[0], "step", spnStep, params[1]);
spnIter.addChangeListener(this);
spnStep.addChangeListener(this);
return pn;
}
@Override
public String getCommand() {
int iter = spnIter.get();
double gamma = spnStep.get();
return iter + " " + NumFormat.nice(gamma);
}
@Override
public void stateChanged(ChangeEvent e) {
Command.command();
}
@Override
public String getName() {
return algo.getName();
}
@Override
public String[] getShortnames() {
return algo.getShortnames();
}
@Override
public String getDocumentation() {
String s = "";
s += "<h1>" + getName();
s += " [<span style=\"color:#FF3333;font-family:georgia\">VC</span>]</h1>";
s += "<p>The simplest iterative algorithm for image deconvolution is the Van Cittert algorithm (1930)</p>";
s += "<p>The algorithm is sensitive to the presence of noise and tends to increase the noise </p>";
return s;
}
}

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