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R2075/DeconvolutionLab2/src/deconvolutionlab/module/ComputationModule.java
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ComputationModule.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package deconvolutionlab.module;
import java.awt.BorderLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import javax.swing.BorderFactory;
import javax.swing.JComboBox;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import bilib.component.GridPanel;
import bilib.tools.NumFormat;
import deconvolution.Command;
import deconvolution.algorithm.Algorithm;
import deconvolutionlab.Config;
import fft.FFT;
public class ComputationModule extends AbstractModule implements ActionListener, ChangeListener {
private JComboBox<String> cmbMultithreading;
private JComboBox<String> cmbSystem;
private JComboBox<String> cmbDisplayFinal;
private JComboBox<String> cmbFFT;
private JComboBox<String> cmbEpsilon;
private JComboBox<String> cmbNormalization;
boolean init = false;
public ComputationModule(boolean expanded) {
super("Computation", "", "Default", "", expanded);
}
@Override
public String getCommand() {
String cmd = "";
if (cmbNormalization.getSelectedIndex() != 0)
cmd += " -norm " + NumFormat.parseNumber((String)cmbNormalization.getSelectedItem(), 1);
if (cmbSystem.getSelectedIndex() != 0)
cmd += " -system no";
if (cmbMultithreading.getSelectedIndex() != 0)
cmd += " -multithreading no";
if (cmbDisplayFinal.getSelectedIndex() != 0)
cmd += " -display no";
if (cmbFFT.getSelectedIndex() != 0)
cmd += " -fft " + FFT.getLibraryByName((String) cmbFFT.getSelectedItem()).getLibraryName();
if (cmbEpsilon.getSelectedIndex() != 6)
cmd += " -epsilon " + (String) cmbEpsilon.getSelectedItem();
return cmd;
}
@Override
public JPanel buildExpandedPanel() {
cmbSystem = new JComboBox<String>(new String[] { "yes", "no" });
cmbMultithreading = new JComboBox<String>(new String[] { "yes", "no" });
cmbDisplayFinal = new JComboBox<String>(new String[] { "yes", "no" });
cmbFFT = new JComboBox<String>(FFT.getLibrariesAsArray());
cmbEpsilon = new JComboBox<String>(new String[] { "1E-0", "1E-1", "1E-2", "1E-3", "1E-4", "1E-5", "1E-6", "1E-7", "1E-8", "1E-9", "1E-10", "1E-11", "1E-12" });
cmbEpsilon.setSelectedItem("1E-6");
cmbNormalization = new JComboBox<String>(new String[] { "1", "10", "1000", "1E+6", "1E+9", "no" });
cmbNormalization.addActionListener(this);
cmbNormalization.setSelectedIndex(0);
cmbNormalization.removeActionListener(this);
GridPanel pnNumeric = new GridPanel(false, 2);
pnNumeric.place(1, 0, "norm");
pnNumeric.place(1, 1, cmbNormalization);
pnNumeric.place(1, 2, "PSF normalization (def:1)");
pnNumeric.place(3, 0, new JLabel("fft"));
pnNumeric.place(3, 1, cmbFFT);
pnNumeric.place(3, 2, new JLabel("FFT library (Fourier)"));
pnNumeric.place(6, 0, new JLabel("system"));
pnNumeric.place(6, 1, cmbSystem);
pnNumeric.place(6, 2, new JLabel("Show the system panel"));
pnNumeric.place(7, 0, new JLabel("display"));
pnNumeric.place(7, 1, cmbDisplayFinal);
pnNumeric.place(7, 2, new JLabel("Display the final output"));
pnNumeric.place(8, 0, new JLabel("multithreading"));
pnNumeric.place(8, 1, cmbMultithreading);
pnNumeric.place(8, 2, new JLabel("Activate multithreading"));
pnNumeric.place(9, 0, new JLabel("epsilon"));
pnNumeric.place(9, 1, cmbEpsilon);
pnNumeric.place(9, 2, new JLabel("<html>Machine Epsilon &epsilon;</html>"));
JScrollPane scroll = new JScrollPane(pnNumeric);
scroll.setBorder(BorderFactory.createEmptyBorder());
scroll.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
scroll.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
JPanel panel = new JPanel(new BorderLayout());
panel.setBorder(BorderFactory.createEtchedBorder());
panel.add(scroll, BorderLayout.CENTER);
Config.register(getName(), "normalization", cmbNormalization, cmbNormalization.getItemAt(0));
Config.register(getName(), "fft", cmbFFT, Algorithm.getDefaultAlgorithm());
Config.register(getName(), "system", cmbSystem, cmbSystem.getItemAt(0));
Config.register(getName(), "display", cmbDisplayFinal, cmbDisplayFinal.getItemAt(0));
Config.register(getName(), "multithreading", cmbMultithreading, cmbMultithreading.getItemAt(0));
Config.register(getName(), "epsilon", cmbEpsilon, "1E-6");
cmbFFT.addActionListener(this);
cmbSystem.addActionListener(this);
cmbDisplayFinal.addActionListener(this);
cmbMultithreading.addActionListener(this);
cmbEpsilon.addActionListener(this);
cmbNormalization.addActionListener(this);
getAction1Button().addActionListener(this);
init = true;
return panel;
}
private void update() {
setCommand(getCommand());
if (init)
setSynopsis("Norm " + cmbNormalization.getSelectedItem() + " " + FFT.getLibraryByName((String) cmbFFT.getSelectedItem()).getLibraryName());
Command.command();
}
@Override
public void stateChanged(ChangeEvent e) {
update();
}
@Override
public void actionPerformed(ActionEvent e) {
super.actionPerformed(e);
if (e.getSource() == getAction1Button()) {
cmbFFT.setSelectedIndex(0);
cmbMultithreading.setSelectedIndex(0);
cmbDisplayFinal.setSelectedIndex(0);
cmbSystem.setSelectedIndex(0);
cmbEpsilon.setSelectedIndex(0);
cmbNormalization.setSelectedIndex(0);
}
update();
}
@Override
public void close() {
getAction1Button().removeActionListener(this);
cmbFFT.removeActionListener(this);
cmbMultithreading.removeActionListener(this);
cmbDisplayFinal.removeActionListener(this);
cmbSystem.removeActionListener(this);
cmbEpsilon.removeActionListener(this);
cmbNormalization.removeActionListener(this);
}
}
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