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AlgorithmModule.java
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AlgorithmModule.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package deconvolutionlab.modules;
import java.awt.BorderLayout;
import java.awt.CardLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.ArrayList;
import javax.swing.BorderFactory;
import javax.swing.BoxLayout;
import javax.swing.JComboBox;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.border.Border;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import bilib.component.HTMLPane;
import deconvolution.Command;
import deconvolution.Deconvolution;
import deconvolution.DeconvolutionDialog;
import deconvolution.algorithm.AbstractAlgorithmPanel;
import deconvolution.algorithm.Algorithm;
import deconvolutionlab.Config;
import deconvolutionlab.Lab;
public class AlgorithmModule extends AbstractModule implements ActionListener, ChangeListener {
private JComboBox<String> cmb;
private HTMLPane doc;
private JPanel cards;
public AlgorithmModule(boolean expanded) {
super("Algorithm", "-algorithm", "", "Check", expanded);
ArrayList<AbstractAlgorithmPanel> deconv = Algorithm.getAvailableAlgorithms();
for (AbstractAlgorithmPanel panel : deconv)
cmb.addItem(panel.getName());
cmb.addActionListener(this);
}
@Override
public String getCommand() {
String name = (String) cmb.getSelectedItem();
AbstractAlgorithmPanel algo = Algorithm.getPanel(name);
String cmd = "-algorithm " + algo.getShortnames()[0] + " " + algo.getCommand();
String synopsis = name;
setSynopsis(synopsis);
setCommand(cmd);
return cmd;
}
@Override
public JPanel buildExpandedPanel() {
cmb = new JComboBox<String>();
JPanel pnc = new JPanel();
pnc.add(cmb);
doc = new HTMLPane(100, 1000);
cards = new JPanel(new CardLayout());
ArrayList<AbstractAlgorithmPanel> panels = Algorithm.getAvailableAlgorithms();
for (AbstractAlgorithmPanel panel : panels) {
JScrollPane scroll = new JScrollPane(panel.getPanelParameters());
scroll.setBorder(BorderFactory.createEmptyBorder());
scroll.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
scroll.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
cards.add(panel.getName(), scroll);
}
cmb.setMaximumRowCount(panels.size());
JPanel control = new JPanel();
control.setLayout(new BoxLayout(control, BoxLayout.PAGE_AXIS));
Border b1 = BorderFactory.createEtchedBorder();
Border b2 = BorderFactory.createEmptyBorder(10, 10, 10, 10);
control.setBorder(BorderFactory.createCompoundBorder(b1, b2));
control.add(cmb);
control.add(cards);
doc.append("h1", "Documentation");
JPanel panel = new JPanel(new BorderLayout());
panel.add(control, BorderLayout.NORTH);
panel.add(doc.getPane(), BorderLayout.CENTER);
// cmb.addActionListener(this);
getAction2Button().setToolTipText("Human readable of the command line");
getAction2Button().addActionListener(this);
Config.register(getName(), "algorithm", cmb, Algorithm.getDefaultAlgorithm());
panel.setBorder(BorderFactory.createEtchedBorder());
return panel;
}
@Override
public void actionPerformed(ActionEvent e) {
super.actionPerformed(e);
if (e.getSource() == cmb) {
doc.clear();
String name = (String) cmb.getSelectedItem();
AbstractAlgorithmPanel algo = Algorithm.getPanel(name);
doc.append(algo.getDocumentation());
CardLayout cl = (CardLayout) (cards.getLayout());
cl.show(cards, name);
}
if (e.getSource() == getAction2Button()) {
Deconvolution deconvolution = new Deconvolution("Check Algorithm", Command.command());
DeconvolutionDialog d = new DeconvolutionDialog(DeconvolutionDialog.Module.ALGO, deconvolution, null, null);
Lab.setVisible(d, false);
}
setSynopsis((String) cmb.getSelectedItem());
setCommand(getCommand());
Command.command();
}
@Override
public void stateChanged(ChangeEvent e) {
setSynopsis((String) cmb.getSelectedItem());
setCommand(getCommand());
Command.command();
}
@Override
public void close() {
}
}

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