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R2075/DeconvolutionLab2/src/deconvolutionlab/modules/FFTModule.java
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FFTModule.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package deconvolutionlab.modules;
import java.awt.BorderLayout;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.ArrayList;
import javax.swing.BorderFactory;
import javax.swing.JComboBox;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JScrollPane;
import javax.swing.border.Border;
import javax.swing.event.ChangeEvent;
import javax.swing.event.ChangeListener;
import lab.component.CustomizedColumn;
import lab.component.CustomizedTable;
import lab.component.GridPanel;
import lab.component.HTMLPane;
import lab.tools.NumFormat;
import signal.Signal;
import deconvolution.Command;
import deconvolution.Deconvolution;
import deconvolution.algorithm.Algorithm;
import deconvolutionlab.Config;
import deconvolutionlab.Constants;
import fft.AbstractFFTLibrary;
import fft.FFT;
public class FFTModule extends AbstractModule implements ActionListener, ChangeListener {
private HTMLPane info;
private JComboBox<String> cmbFFT;
private JComboBox<String> cmbType;
private JComboBox<String> cmbSep;
private JComboBox<String> cmbEpsilon;
private CustomizedTable table;
public FFTModule(boolean expanded) {
super("Fourier", "", "", "Default", expanded);
}
@Override
public String getCommand() {
String cmd = "";
if (cmbFFT.getSelectedIndex() != 0)
cmd += " -fft " + (String) cmbFFT.getSelectedItem();
return cmd;
}
@Override
public JPanel buildExpandedPanel() {
ArrayList<CustomizedColumn> columns = new ArrayList<CustomizedColumn>();
columns.add(new CustomizedColumn("Name", String.class, 120, false));
columns.add(new CustomizedColumn("Installed", String.class, 120, false));
columns.add(new CustomizedColumn("Multithreadable", String.class, 120, false));
columns.add(new CustomizedColumn("Location", String.class, Constants.widthGUI, false));
table = new CustomizedTable(columns, true);
table.setRowSelectionAllowed(false);
info = new HTMLPane(100, 100);
cmbFFT = new JComboBox<String>(FFT.getLibrariesAsArray());
cmbType = new JComboBox<String>(new String[] { "float" });
cmbSep = new JComboBox<String>(new String[] { "XYZ" });
cmbEpsilon = new JComboBox<String>(new String[] { "1E-0", "1E-1", "1E-2", "1E-3", "1E-4", "1E-5", "1E-6", "1E-7", "1E-8", "1E-9", "1E-10", "1E-11", "1E-12" });
cmbEpsilon.setSelectedItem("1E-6");
GridPanel pnNumeric = new GridPanel(false, 3);
pnNumeric.place(3, 0, new JLabel("FFT Fourier Library"));
pnNumeric.place(3, 1, cmbFFT);
pnNumeric.place(6, 0, new JLabel("FFT Dimension"));
pnNumeric.place(6, 1, cmbSep);
pnNumeric.place(7, 0, new JLabel("<html>Machine Epsilon &epsilon;</html>"));
pnNumeric.place(7, 1, cmbEpsilon);
JScrollPane scroll2 = new JScrollPane(pnNumeric);
scroll2.setBorder(BorderFactory.createEmptyBorder());
scroll2.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
scroll2.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED);
JPanel control = new JPanel(new BorderLayout());
Border b1 = BorderFactory.createEtchedBorder();
Border b2 = BorderFactory.createEmptyBorder(10, 10, 10, 10);
control.setBorder(BorderFactory.createCompoundBorder(b1, b2));
control.add(scroll2, BorderLayout.NORTH);
control.add(info.getPane(), BorderLayout.CENTER);
control.add(table.getPane(80, 80), BorderLayout.SOUTH);
JPanel panel = new JPanel(new BorderLayout());
panel.add(control, BorderLayout.CENTER);
Config.register(getName(), "epsilon", cmbEpsilon, "1E-6");
Config.register(getName(), "fft", cmbFFT, Algorithm.getDefaultAlgorithm());
Config.register(getName(), "dim", cmbSep, "XYZ");
cmbFFT.addActionListener(this);
cmbType.addActionListener(this);
cmbEpsilon.addActionListener(this);
getAction1Button().addActionListener(this);
getAction2Button().addActionListener(this);
fillInstallation();
return panel;
}
private void fillInstallation() {
ArrayList<AbstractFFTLibrary> libs = FFT.getRegisteredLibraries();
for (AbstractFFTLibrary lib : libs) {
String name = lib.getLibraryName();
String installed = lib.isInstalled() ? " Yes" : "No";
String multit = lib.isMultithreadable() ? " Yes" : "No";
String location = lib.getLocation();
table.append(new String[] { name, installed, multit, location });
}
AbstractFFTLibrary fftlib = FFT.getLibraryByName((String) cmbFFT.getSelectedItem());
info.clear();
info.append("p", fftlib.getLicence());
}
private void update() {
setCommand(getCommand());
Signal.epsilon = NumFormat.parseNumber((String) cmbEpsilon.getSelectedItem(), 1e-6);
Command.command();
}
@Override
public void stateChanged(ChangeEvent e) {
update();
}
@Override
public void actionPerformed(ActionEvent e) {
super.actionPerformed(e);
if (e.getSource() == cmbFFT || e.getSource() == cmbSep) {
AbstractFFTLibrary fftlib = FFT.getLibraryByName((String) cmbFFT.getSelectedItem());
info.clear();
info.append("p", fftlib.getLicence());
}
if (e.getSource() == getAction1Button()) {
cmbFFT.removeActionListener(this);
cmbType.removeActionListener(this);
cmbEpsilon.removeActionListener(this);
cmbFFT.setSelectedIndex(0);
cmbType.setSelectedIndex(0);
cmbEpsilon.setSelectedIndex(0);
cmbFFT.addActionListener(this);
cmbType.addActionListener(this);
cmbEpsilon.addActionListener(this);
}
update();
}
@Override
public void close() {
getAction1Button().removeActionListener(this);
getAction2Button().removeActionListener(this);
cmbFFT.removeActionListener(this);
cmbType.removeActionListener(this);
cmbEpsilon.removeActionListener(this);
}
}
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