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Ramp.java
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Wed, Feb 19, 23:29

Ramp.java
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/*
* DeconvolutionLab2
*
* Conditions of use: You are free to use this software for research or
* educational purposes. In addition, we expect you to include adequate
* citations and acknowledgments whenever you present or publish results that
* are based on it.
*
* Reference: DeconvolutionLab2: An Open-Source Software for Deconvolution
* Microscopy D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz,
* R. Guiet, C. Vonesch, M Unser, Methods of Elsevier, 2017.
*/
/*
* Copyright 2010-2017 Biomedical Imaging Group at the EPFL.
*
* This file is part of DeconvolutionLab2 (DL2).
*
* DL2 is free software: you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation, either version 3 of the License, or (at your option) any later
* version.
*
* DL2 is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
* A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with
* DL2. If not, see <http://www.gnu.org/licenses/>.
*/
package signal.factory;
import signal.RealSignal;
public class Ramp extends SignalFactory {
private double orientationX = 1;
private double orientationY = 1;
private double orientationZ = 1;
public Ramp(double orientationX, double orientationY, double orientationZ) {
super(new double[] {orientationX, orientationY, orientationZ});
setParameters(new double[] {orientationX, orientationY, orientationZ});
}
@Override
public String getName() {
return "Ramp";
}
@Override
public String[] getParametersName() {
return new String[] {"Orientation X", "Orientation Y", "Orientation Z"};
}
@Override
public void setParameters(double[] parameters) {
if (parameters.length >= 1)
this.orientationX = parameters[0];
if (parameters.length >= 2)
this.orientationY = parameters[1];
if (parameters.length >= 3)
this.orientationZ = parameters[1];
}
@Override
public double[] getParameters() {
return new double[] {orientationX, orientationY, orientationZ};
}
@Override
public void fill(RealSignal signal) {
double ox = orientationX;
double oy = orientationY;
double oz = orientationZ;
double mx = 1 / (3.0*nx);
double my = 1 / (3.0*ny);
double mz = 1 / (3.0*nz);
for(int x=0; x<nx; x++)
for(int y=0; y<ny; y++)
for(int z=0; z<nz; z++) {
double dx = (xc-x) * mx;
double dy = (yc-y) * my;
double dz = (zc-z) * mz;
signal.data[z][x+nx*y] = (float)(dx*ox + dy*oy + dz*oz);
}
signal.rescale(0, amplitude);
}
}

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