run_mitgcm_itrda.csh
c8d59fb69877master

run_mitgcm_itrda.csh
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			#!/bin/csh
			# invoking mpirun on ITRDA Linux cluster
			#
			# o -q queue
			# available on itrda are four (=2hours), long (=168hours)
			#PBS -q long
			#
			# o -N Job name
			#PBS -N global2x2
			#
			# -l resource lists
			#PBS -l nodes=6:ppn=2
			#
			# o STDERR/OUT
			#PBS -e stderr
			#PBS -o stdout
			#
			# o export all my environment var's
			#PBS -V
			printenv
			#
			# get PBS node info
			#
			echo $PBS_NODEFILE
			cat $PBS_NODEFILE
			#
			cat $PBS_NODEFILE >! my_proc_list
			set ncpus = ( `wc -l my_proc_list \| awk '{print $1}'` )
			echo 'ncpus = ' $ncpus
			set listvar = `cat my_proc_list`
			#
			cd /u1/heimbach/ecco/ecco-branch/exe
			cp ~heimbach/ecco/ecco-branch/exe/mitgcmuv .
			#
			echo $ncpus >! my_list
			set dualvar = 1
			foreach lv ($listvar)
			if ( $dualvar == 1 ) then
			echo $lv 2 >> my_list
			set dualvar = 2
			else
			echo $lv 4 >> my_list
			set dualvar = 1
			endif
			end
			#
			/usr/local/mpich/mpich-1.2.1..7b_pgi/bin/mpirun.ch_gm \
			--gm-f ./my_list --gm-v ./mitgcmuv

			exit