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R2795 mitgcm_lac_leman_abirani
testreport
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#! /usr/bin/env bash
#
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.211 2017/01/11 23:21:21 jmc Exp $
# $Name: $
#
usage()
{
echo
echo "Usage: $0 [OPTIONS]"
echo
echo "where possible OPTIONS are:"
echo " (-help|-h) print usage"
echo " ---- type of test : ----"
echo " (-tlm) perform a Tangent Linear run"
echo " (-adm|-ad) perform an adjoint run"
echo " (-oad) perform an OpenAD adjoint run"
echo " (-mth) run multi-threaded (using eedata.mth)"
echo " (-mpi) use MPI to compile and run on 2 processors"
echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
echo " (-command|-c) STRING command to run (e.g., if non-standard MPI setting)"
echo " DEF='mitgcmuv' or ='mpirun -np TR_NPROC mitgcmuv'"
echo " ---- testing options : ----"
echo " (-optfile|-of) STRING optfile to use"
echo " (-fast) use optfile default for compiler flags (no '-ieee')"
echo " DEF=off => use IEEE numerics option (if available)"
echo " (-devel) use optfile developement flags (if available)"
echo " (-gsl) compile with \"-gsl\" flag"
echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
echo " (recognized groups: basic, tutorials)"
echo " (DEF=\"\" which test all)"
echo " (if list= 'start_from THIS_EXP' then"
echo " test THIS_EXP + all the following)"
echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
echo " (DEF=\"\" which test all)"
echo " (-ts) provide timing information per timestep"
echo " (-papis) provide MFlop/s per timestep using PAPI"
echo " (-pcls) provide MFlop/s per timestep using PCL"
echo " ---- system options : ----"
echo " (-bash|-b) STRING preferred location of a \"bash\" or \"sh\" shell"
echo " (DEF=\"\" for \"bash\")"
echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
echo " (-ncad) use genmake2 option \"-nocat4ad\" (-ncad)"
echo " (-small_f) make target small_f before making target all"
echo " (-makedepend|-md) STRING command to use for \"makedepend\""
echo " (-make|-m) STRING command to use for \"make\""
echo " (DEF=\"make\")"
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
echo " ---- output options : ----"
echo " (-match) NUMBER Matching Criteria (number of digits)"
echo " (DEF=\"$MATCH_CRIT\")"
echo " (-odir) STRING used to build output directory name"
echo " (DEF=\"hostname\")"
echo " (-addr|-a) STRING list of email recipients"
echo " (DEF=\"\" no email is sent)"
echo " (-send) STRING sending command (instead of using mpack)"
echo " (-savdir|-sd) STRING location to save output tar file to send (DEF='$SAVDIR')"
echo " (-mpackdir|-mpd) DIR location of the mpack utility"
echo " (DEF=\"../tools/mpack-1.6\")"
echo " -- do only some parts: --"
echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
echo " (-obj) only produces objects (=norun & no executable)"
echo " (-src) only produces small '*.f' src files (not even obj)"
echo " + with: '-adm/-tlm', also makes taf outp src code"
echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
echo " (-nogenmake|-ng) skip the genmake stage"
echo " (-noclean|-nc) skip the \"make clean\" stage"
echo " (-nodepend|-nd) skip the \"make depend\" stage"
echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
echo " (-deloutp|-do) delete output files after successful run"
echo " (-deldir|-dd) on success, delete the output directory"
echo
echo "and where STRING can be a whitespace-delimited list"
echo "such as:"
echo
echo " -t 'exp0 exp2 exp3' "
echo " -addr='abc@123.com testing@home.org'"
echo
echo "provided that the expression is properly quoted within the current"
echo "shell (note the use of single quotes to protect white space)."
echo
exit 1
}
# build the mpack utility
build_mpack()
{
printf "building the mpack utility... "
MPACK="$MPACKDIR/mpack"
if test ! -x $MPACK ; then
if test ! -d $MPACKDIR ; then
echo
echo "Error: can't find \"$MPACKDIR\""
echo " are you sure this program is being run in the correct "
echo " (that is, \"MITGCM_ROOT\verification\") directory?"
echo
HAVE_MPACK=f
fi
if test "x$CC" = x ; then
export CC=cc
fi
printf "building mpack (using CC=$CC)... "
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
RETVAL=$?
if test "x$RETVAL" != x0 ; then
echo
echo "Error building the mpack tools at: $MPACK_DIR"
echo
HAVE_MPACK=f
else
rm -f tr_build_mpack.out
HAVE_MPACK=t
echo "done"
fi
else
HAVE_MPACK=t
echo "already exist"
fi
}
testoutput_var()
{
# testoutput_var dir s1 label subdir reference_output
#
# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
# with same output from reference file $dir/$reference_output
# using search strings s1 and text label
if [ $debug -gt 0 ]; then
echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
fi
if [ -r $1/$4/$OUTPUTFILE ]; then
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | nl > ${TMP}a.txt
lncntA=`wc -l ${TMP}a.txt | awk '{print $1}' `
if [ $lncntA -lt 2 ]; then
if [ $verbose -gt 0 ]; then
echo Not enough lines of output when searching for "$2" 1>&2
fi
rm -f ${TMP}a.txt ; return 99
fi
else
echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
return 99
fi
if [ $debug -gt 0 ]; then
echo testoutput_var: grep "$2" $1/$5 1>&2
fi
grep "$2" $1/$5 | sed 's/.*=//' | nl > ${TMP}b.txt
lncntB=`wc -l ${TMP}b.txt | awk '{print $1}' `
if [ $lncntB -lt 2 ]; then
if [ $verbose -gt 0 ]; then
echo Not enough lines of output when searching for "$2" 1>&2
fi
rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
fi
if [ $lncntA -ne $lncntB ]; then
if [ $verbose -gt 0 ]; then
echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
fi
rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
fi
has_nan=`cat ${TMP}a.txt | grep -i nan | wc -l`
if [ $has_nan -gt 0 ] ; then
echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
fi
has_inf=`cat ${TMP}a.txt | grep -i inf | wc -l`
if [ $has_inf -gt 0 ] ; then
echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
rm -f ${TMP}a.txt ${TMP}b.txt ; return 99
fi
if [ $debug -gt 0 ]; then
echo testoutput_var: join ${TMP}a.txt ${TMP}b.txt 1>&2
fi
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
join ${TMP}a.txt ${TMP}b.txt | awk '{print $1 " " $2 " " $3}' | sed -e 's|:||g' > ${TMP}c.txt
if [ $debug -gt 0 ]; then
echo testoutput_var: compare_lines 1>&2
fi
if [ $verbose -gt 1 ]; then
cat ${TMP}c.txt 1>&2
fi
echo "-1" >> ${TMP}c.txt
digits_of_similarity=`./tr_cmpnum < ${TMP}c.txt`
if [ $digits_of_similarity -eq 99 ]; then
if [ $verbose -gt 0 ]; then
echo testoutput_var: No comparison was available for \"$3\" 1>&2
fi
digits_of_similarity=99
else
if [ $verbose -gt 0 ]; then
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
fi
fi
rm -f ${TMP}a.txt ${TMP}b.txt ${TMP}c.txt
return $digits_of_similarity
}
testoutput_run()
{
# testoutput_run directory subdir reference_output
#
# test output from 1 run in "directory"
# --> same processing for adjoint & forward test
# default list of output variables to be checked:
# 1rst : main variable used to decide if it pass or FAIL
# others : number of matching digits to be printed in summary.txt
listChk=$DEF_CHECK_LIST
# load experiment-specific list from file "tr_checklist" (if it exist)
if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
sVar=`echo $listChk | awk '{print $1}'`
# remove 1rst var and expand the list: + => min max mean s.d
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
| sed 's/+//g' | sed "s/^$sVar//"`
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
# set ref.outp file-name and, if compressed, uncompress it into subdir
refoutp=results/$3
if test ! -r $1/results/$3 ; then
if test -r $1/results/${3}.gz ; then
tmpNam1=$3
tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'`
if test "x$tmpNam1" = "x$tmpNam2" ; then
tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'`
fi
refoutp=$2/$tmpNam1
if [ $debug -gt 0 ]; then
echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2
fi
gzip -cd $1/results/${3}.gz > $1/$refoutp
else
echo "missing reference output file '$3' (.gz) in '$1/results/'"
fi
fi
# check for ptracer output in reference_output file :
if test $KIND = 0 ; then
ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
for ii in $PTRACERS_NUM ; do
ptrfound=0
for jj in $ptr_mon ; do
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'`
if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
done
if test $ptrfound = '1' ; then
eval "HAVE_PTR0"$ii"=t"
else
eval "HAVE_PTR0"$ii"=f"
# remove this ptr from the list of output variable to check
# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
fi
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
done
fi
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
if test $tst != 1 ; then
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
echo "==> WARNING: in checked list:" $listVar 1>&2
#- put it back once:
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
fi
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
echo "listVar='$listVar'" >> $locDIR"/summary.txt"
#---
allargs=""
for xx in $listVar
do
#ii=`echo $xx | sed 's/^pt[0-9][0-9]*..$/XXX/'` #- any ptr number
ii=`echo $xx | sed 's/^pt[1-9]..$/XXX/'` #- 1 to 9 ptr number
if test $ii != 'XXX' ; then
#- all except ptracer stats:
case $xx in
'PS') if [ $debug -gt 0 ]
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$?
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;;
'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;;
'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;;
'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;;
'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;;
'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;;
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;;
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;;
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;;
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;;
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;;
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;;
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;;
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;;
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;;
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;;
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;;
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;;
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;;
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;;
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;;
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;;
'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;;
'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;;
'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;;
'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;;
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;;
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;;
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;;
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;;
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;;
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;;
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;;
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;;
'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;;
'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;;
'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;;
'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;;
'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;;
'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;;
'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;;
'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;;
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;;
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;;
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;;
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Glob-ave" $2 $refoutp ; yy=$? ;;
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South-av" $2 $refoutp ; yy=$? ;;
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North-av" $2 $refoutp ; yy=$? ;;
'HthMxS') testoutput_var $1 "thSI_IceH_max_S" "thSIc H South-max" $2 $refoutp ; yy=$? ;;
'HthMxN') testoutput_var $1 "thSI_IceH_max_N" "thSIc H North-max" $2 $refoutp ; yy=$? ;;
'sbo_M') testoutput_var $1 "sbo_mass" "SBO mass" $2 $refoutp ; yy=$? ;;
'sboFW') testoutput_var $1 "sbo_mass_fw" "SBO m-FW" $2 $refoutp ; yy=$? ;;
'sboAc') testoutput_var $1 "sbo_zoamc" "SBO AM-C" $2 $refoutp ; yy=$? ;;
'sboAp') testoutput_var $1 "sbo_zoamp" "SBO AM-P" $2 $refoutp ; yy=$? ;;
'StrmIc') testoutput_var $1 "STREAMICE_FP_ERR" "StreamIce Solver" $2 $refoutp ; yy=$? ;;
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
esac
else
#- ptracers stats:
nn=`echo $xx | sed 's/pt//' | sed 's/..$//'`
ii=`echo $xx | sed 's/^pt[0-9]*//'`
case $ii in
'mn') testoutput_var $1 "trcstat_ptracer0"$nn"_min" "p0"$nn"_min" $2 $refoutp ; yy=$? ;;
'mx') testoutput_var $1 "trcstat_ptracer0"$nn"_max" "p0"$nn"_max" $2 $refoutp ; yy=$? ;;
'av') testoutput_var $1 "trcstat_ptracer0"$nn"_mean" "p0"$nn"_mean" $2 $refoutp ; yy=$? ;;
'sd') testoutput_var $1 "trcstat_ptracer0"$nn"_sd" "p0"$nn"_StDv" $2 $refoutp ; yy=$? ;;
esac
fi
if test $xx = $sVar
then allargs="$allargs > $yy <"
else allargs="$allargs $yy"
fi
done
nbVar=`echo $listVar | awk '{print NF}'`
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
#-- fill line (up to standard length) with dot:
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
echo $allargs $adNul
else
echo $allargs
fi
# <-- same processing for adjoint & forward test
}
genmakemodel()
{
# genmakemodel directory
if test "x$NOGENMAKE" = xt ; then
echo "genmake skipped!"
else
if test "x$BASH" = x ; then
GENMAKE2="../../../tools/genmake2"
else
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
fi
(
cd $1;
command="$GENMAKE2 -ds -m $MAKE"
if test "x$MKDEPEND" != x ; then
command="$command -makedepend=$MKDEPEND"
fi
if test $KIND = 4 ; then
command="$command -oad -mods=../$code_dir"
else
command="$command -mods=../$code_dir"
fi
if test "x$OPTFILE" != xNONE ; then
command="$command -optfile=$OPTFILE"
fi
if test $OptLev = 1 ; then
command="$command -ieee"
fi
if test $OptLev = 0 ; then
command="$command -devel"
fi
if test "x$GSL" = xt ; then
command="$command -gsl"
fi
if test "x$MPI" != x0 ; then
command="$command -mpi"
fi
if test "x$MULTI_THREAD" = xt ; then
#- run multi-threaded using OpenMP:
command="$command -omp"
fi
if test "x$USE_R4" = xt ; then
command="$command -use_r4"
fi
if test "x$EXTRFLG" != x ; then
command="$command -extra_flag $EXTRFLG"
fi
if test "x$NOCATAD" = xt ; then
command="$command -nocat4ad"
fi
if test "x$TS" = xt ; then
command="$command -ts"
fi
if test "x$PAPIS" = xt ; then
command="$command -papis"
else
if test "x$PCLS" = xt ; then
command="$command -pcls"
fi
fi
printf 'genmake ... '
eval $command > genmake.tr_log 2>&1
RETVAL=$?
# Reduce the size of the testing emails!
head -100 Makefile > $CDIR/Makefile_head
if test "x$RETVAL" != x0 ; then
tail genmake.tr_log
echo "genmakemodel: genmake failed"
cp genmake.log genmake_* genmake.tr_log $CDIR
return 1
else
echo "successful"
fi
)
fi
}
makeclean()
{
# makeclean directory
if test "x$NOGENMAKE" = xf ; then rm -f $1/make.tr_log ; fi
if test "x$NOCLEAN" = xt ; then
echo "make Clean skipped!"
else
(
cd $1;
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
if test -r Makefile ; then
printf 'clean build-dir: make Clean ... '
$MAKE Clean >> make.tr_log 2>&1
RETVAL=$?
if test "x$RETVAL" != x0 ; then
tail make.tr_log
echo "makeclean: \"make Clean\" failed"
cp make.tr_log genmake.log genmake.tr_log $CDIR
return 1
fi
echo successful
else
echo ''
fi
exit 0
)
fi
}
run_clean()
{
# run_clean directory
if test "x$NOCLEAN" = xt ; then
echo "run_clean skipped!"
else
(
cd $1;
printf 'clean run-dir ... '
# part of what is done after "make clean" when doing "make CLEAN"
find . -name "*.meta" -exec rm {} \;
find . -name "*.data" -exec rm {} \;
find . -name "fort.*" -exec rm {} \;
find . -type l -exec rm {} \;
#- should remove executable only if sym-link (already done above)
rm -f $RUNLOG *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
rm -f datetime costfinal divided.ctrl snapshot* output_adm.*.diva_*
rm -f *_MIT_CE_000.opt0000 costfunction*0000
rm -f oad_cp.[0-9][0-9][0-9].?????
rm -rf mnc_test_*
echo successful
exit 0
)
fi
}
makedependmodel()
{
# makedependmodel directory
if test "x$NODEPEND" = xt ; then
echo "make depend skipped!"
else
(
cd $1;
printf 'make depend ... '
$MAKE depend >> make.tr_log 2>&1
RETVAL=$?
if test "x$RETVAL" != x0 ; then
tail make.tr_log
echo "makedependmodel: make depend failed"
cp make.tr_log genmake.log genmake.tr_log $CDIR
return 1
else
echo successful
fi
)
fi
}
makemodel()
{
# makemodel directory
(
mk_fail=0
if test "x$NOMAKE" = xt ; then
cd $1;
if test -x $EXECUTABLE ; then
echo "make skipped!"
else
echo "no executable!"
mk_fail=3
fi
else
cd $1;
if test -r Makefile ; then
if test "x$MKSMALLF" = xt ; then
printf 'make small_f ... '
$MAKE_CMD small_f >> make.tr_log 2>&1
RETVAL=$?
if test "x$RETVAL" != x0 ; then
tail make.tr_log
echo failed
cp genmake.log genmake.tr_log $CDIR
tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
rm -f $EXECUTABLE
mk_fail=1
else
echo successful
fi
fi
printf "make $TARG ... "
$MAKE_CMD $TARG >> make.tr_log 2>&1
RETVAL=$?
if test "x$RETVAL" != x0 ; then
tail make.tr_log
echo failed
cp genmake.log genmake.tr_log $CDIR
tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
rm -f $EXECUTABLE
mk_fail=1
else
echo successful
fi
else
echo "no Makefile !"
mk_fail=2
fi
fi
if test $KIND = 1 -a -f taf_ftl.log ; then
head -1 taf_ftl.log >> $CDIR"/summary.txt"
fi
if test $KIND = 2 -a -f taf_ad.log ; then
head -1 taf_ad.log >> $CDIR"/summary.txt"
nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
if test -f taf_output ; then
n2er=`grep -c 'TAF *.* ERROR ' taf_output`
n3er=`grep -c '\*ERROR\* ' taf_output`
nerr=`expr $nerr + $n2er + $n3er`
fi
echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
>> $CDIR"/summary.txt"
fi
if test $mk_fail != 0 ; then return $mk_fail ; fi
)
}
mk_mpi_size()
{
# mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y
#
# make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
# for an MPI build with no more than proc_Nb processors ;
# ensure that enough tiles per proc (nSx,nSy) remain for the given
# number of threads (nTx,nTy) ;
# return the effective number of processors.
inp=$1
out=$2
np=$3
tx=$4
ty=$5
tmp=TTT.$$
# dirX : select with direction to favor in MPI process repartition
# dirX=1 : prefer to put more proc in X direction
# dirX=0 : prefer to put more proc in Y direction
dirX=0
px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
#- for each direction, assume # of threads is a multiple of total number of tiles
nx=$px
if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then
nx=`expr $sx \* $px / $tx`
if [ $verbose -gt 1 ]; then
echo " change px from $px to $nx to accommodate $tx threads"
fi
fi
ny=$py
if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then
ny=`expr $sy \* $py / $ty`
if [ $verbose -gt 1 ]; then
echo " change py from $py to $ny to accommodate $ty threads"
fi
fi
#- find the largest divisor of input_file proc Nb, but not larger than $np
pp=0
i=1
while [ $i -le $nx ] ; do
if [ `expr $nx % $i` -eq 0 ] ; then
j=1
while [ $j -le $ny ] ; do
if [ `expr $ny % $j` -eq 0 ] ; then
ij=`expr $i \* $j`
if [ $ij -gt $pp ] ; then
flag=1
elif [ $ij -eq $pp ] ; then
flag=$dirX
else
flag=0
fi
if test $flag = 1 ; then
if [ $ij -le $np ] ; then
ix=$i ; jy=$j ; pp=$ij
#echo " ix,jy= $ix,$jy"
fi
fi
fi
j=`expr $j + 1`
done
fi
i=`expr $i + 1`
done
#- create new SIZE.h type file:
sx=`expr $sx \* $px / $ix`
sy=`expr $sy \* $py / $jy`
if [ $verbose -gt 1 ]; then
echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
fi
sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
rm -f $tmp
return $pp
}
symlink_mpifiles()
{
# Put special links so that MPI specific files are used
# This MUST be invoked between makeclean and makelinks because
# the Makefile will link to non-mpi files by default
dir=$1
code_dir=$2
build_dir=$dir/$3
# These are files that should replace their counter-part when using -mpi
MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
for ii in $MPI_FILES ; do
i=`echo $ii | sed 's:^\./::'`
name=`echo $i | sed 's:_mpi::'`
file="../$code_dir/$i"
if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
# Is this an MPI run?
if test "x$MPI" = x0 ; then
# NO: We undo any _mpi symbolically linked files
if test -L $build_dir/$name ; then
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
RETVAL=$?
if test "x$RETVAL" = x0 ; then
if [ $verbose -gt 1 ]; then
echo " Un-linking $name from ../$code_dir" ; fi
rm -f $build_dir/$name
fi
fi
else
# YES: We symbolically link these files to the build
# dir so long as there is no real file in place
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
RETVAL=$?
if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
if test "x$RETVAL" != x0 ; then
if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
if test ! -r $build_dir/$name ; then
if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
(cd $build_dir; ln -sf $file $name)
fi
fi
fi
done
}
linkdata()
{
# linkdata run_dir input_dir_1 input_dir_2 ...
#
# symbolically link data files to run directory
if test -d $1 ; then
(
cd $1 ; shift
echo 'linkdata from dirs:' $*
inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
for xx in $inpMPI ; do
if test -r "../"$1"/"$xx ; then
# found 1 _mpi sfx file in 1rst input dir and it is readable
yy=`echo $xx | sed 's:\.mpi$::'`
if test "x$MPI" = "x0" ; then
# not mpi test: remove symbolic link
if test -h $yy ; then rm -f $yy ; fi
else
# mpi test: remove symbolic link & link .mpi sfx file
if test -h $yy ; then rm -f $yy ; fi
if test ! -r $yy ; then
ln -sf "../"$1"/"$xx $yy ;
printf " $xx" 1>&2
fi
fi
fi
done
if test -r "../"$1"/eedata.mth" ; then
# found eedata.mth in 1rst input dir and it is readable
if test "x$MULTI_THREAD" = "xt" ; then
# multi-threaded test: remove symbolic link & link eedata.mth
if test -h eedata ; then rm -f eedata ; fi
if test ! -r eedata ; then
ln -sf "../"$1"/eedata.mth" eedata ;
printf ' eedata.mth' 1>&2
fi
else
# not multi-threaded test: remove eedata symbolic link
if test -h eedata ; then rm -f eedata ; fi
fi
fi
prevDir='NONE'
for ldir in $* ; do
if test -d "../"$ldir -a $ldir != $prevDir ; then
printf " ldir=${ldir}:" 1>&2
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
for i in $files ; do
if test ! -d "../"$ldir/$i ; then
if test ! -r $i ; then
printf ' '$i 1>&2
ln -sf "../"$ldir"/"$i $i
fi
fi
done
printf ' ;' 1>&2
if test -x "../"$ldir"/"prepare_run ; then
"../"$ldir"/"prepare_run 1>&2
else
echo '' 1>&2
fi
fi
prevDir=$ldir
done
)
fi
}
runmodel()
{
# runmodel directory
#
# runs $COMMAND in "directory"
# (where "$COMMAND" is relative to "directory")
(
cd $1
printf 'runmodel in %s ... ' $1
if test "x$MPI" != x0 ; then
#- adjust the MPI run command with the right number of Procs
#echo '' ; echo " COMMAND='$COMMAND'"
COMMAND=`echo $COMMAND | sed "s/ TR_NPROC/ $LOC_NPROC/"`
if test "x$MPI_MFILE" != x ; then
COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
fi
#echo " COMMAND='$COMMAND'"
fi
if test -L $EXECUTABLE ; then
if test -x "../"$builddir"/"$EXECUTABLE ; then
cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
else rm -f $EXECUTABLE
fi
fi
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
ln -sf "../"$builddir"/"$EXECUTABLE .
fi
if test ! -x $EXECUTABLE ; then
rm -f $RUNLOG ; touch $RUNLOG
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
echo " no executable:" $EXECUTABLE >> $RUNLOG
RETVAL=8
ENDVAL=-1
else
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
# output do not exist or is older than executable:
rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
#- Divided Adjoint Run:
# get the number of additional runs (add_DIVA_runs) from file "run_ADM_DIVA"
if test $KIND = 2 -a -f run_ADM_DIVA ; then
adm_diva_nb=`sed -n '/^ *add_DIVA_runs\>.*=/p' run_ADM_DIVA | sed 's/ //g'`
echo " Divided Adjoint Run: $adm_diva_nb" >> $RUNLOG
eval "let $adm_diva_nb"
if [ $add_DIVA_runs -ge 1 ] ; then
rm -f costf* divided.ctrl snapshot*
echo -n "(add_DIVA_runs=$add_DIVA_runs) ... "
for ii in `seq 1 $add_DIVA_runs` ; do
( eval $COMMAND ) >> $RUNLOG 2>&1
echo " additional DIVA run # $ii : done" >> $RUNLOG
mv -f $OUTPUTFILE ${OUTPUTFILE}.diva_${ii}
done
fi
fi
#- special DIVA processing ends here
( eval $COMMAND ) >> $RUNLOG 2>&1
RETVAL=$?
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
find . -name "*.meta" -exec rm {} \;
find . -name "*.data" -exec rm {} \;
rm -rf mnc_test_*
fi
else
RETVAL=0
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
touch $RUNLOG
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
fi
fi
rm -f run.log_tmp
#- in all cases where OutputFile exists, report SIZE and time
if test -f $OUTPUTFILE ; then
grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
| sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
# grep -A3 'Seconds in section "ALL' $OUTPUTFILE \
# | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
# some implementations of grep cannot do contextual searches so we
# replace the above with a sed command
cat $OUTPUTFILE | sed -n '/Seconds in section "ALL/{N
N
N
p
}' | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
fi
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
echo successful
printf '=> output from running in %s :\n' $1 1>&2
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
return 0
elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
#-- for some weird cases (run is finihed but with error code)
echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
printf '=> output from running in %s :\n' $1 1>&2
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
return 0
else
echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
printf '=> output from running in %s :\n' $1 1>&2
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
cp $RUNLOG $CDIR"/"$RUNLOG
return 1
fi
)
}
createcodelet()
{
# create codelet for comparing model output
printf "creating the comparison code (using CC=$CC)... "
cat > tr_cmpnum.c <<EOF
#include <stdio.h>
#include <math.h>
int main( int argc, char** argv ) {
int linnum,cmplin,best,lncnt;
double a,b,abave,relerr;
best = -22;
lncnt = 0;
while( 1 & ( (lncnt+=1) < 999 ) ) {
scanf("%d", &linnum);
if (linnum == -1) break;
scanf("%lf", &a); scanf("%lf", &b);
abave = 0.5*(fabs(a)+fabs(b));
if ( abave == abave ) {
if (abave > 0.0) {
relerr=fabs(a-b)/abave;
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
else { cmplin = -16 ; }
best = (best > cmplin) ? best : cmplin; }
else { cmplin = -22 ; }
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
}
else {
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */
break; }
}
if (lncnt == 999) best=-29;
if (linnum != -1) best=-99;
printf("%d\n", -best);
return 0;
}
EOF
$CC -o tr_cmpnum tr_cmpnum.c -lm
if [ -x ./tr_cmpnum ]; then
echo "OK"
return 0
else
echo
echo "ERROR: failed to compile comparison code -- please specify"
echo " a C compiler using the CC environment variable."
exit 1
fi
}
formatresults()
{
# formatresults expt genmake depend make run results*
nm=$1
printf '%s %s %s %s' $2 $3 $4 $5
shift; shift; shift; shift; shift;
listPrt=$@
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
printf '%3s' $listPrt
# line below does not work on hp-ux_ia64 : do those substitutions later on
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
if [ $xx = '..' ]; then
printf ' N/O '
elif [ $xx = '--' ]; then
printf ' N/O '
elif [ $xx = 99 ]; then
printf ' N/O '
else
if [ $xx -ge $MATCH_CRIT ]; then
printf ' pass'
else
printf ' FAIL'
fi
fi
printf ' %s' $nm
if test $KIND = 2 ; then
#-- apppend taf repport summary:
tafrep=`grep -c '^ TAF reports ' $CDIR/summary.txt`
if test $tafrep = 1 ; then
grep '^ TAF reports ' $CDIR/summary.txt | awk '{printf " (e=%i, w=%i)",$3,$6}'
fi
fi
printf '\n'
}
scandirs()
{
if [ $# -eq 1 ]; then
for arg in * ; do
#test -f $arg/$1 && echo $arg
test -f $arg/$1 -o -f $arg/$1.gz && echo $arg
done
else
echo $*
fi
}
check_eedata()
{
# check_eedata eedata size.h
if [ $# -eq 2 ] ; then
if test -f $1 -a -f $2 ; then
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
if test "x$nx" = x ; then
rx=10
else
rx=`expr $sx % $nx`
fi
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
if test "x$ny" = x ; then
ry=20
else
ry=`expr $sy % $ny`
fi
echo `expr $rx + $ry`
else
echo '-1'
fi
elif [ $# -eq 1 ] ; then
if test -f $1 ; then
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
if test "x$nx" = x ; then nx=1 ; fi
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
if test "x$ny" = x ; then ny=1 ; fi
#echo $nx $ny
echo $nx
else
echo '-1'
fi
else
echo '-2'
fi
}
###############################################################################
# Default properties
debug=0
verbose=1
NBLINES_MKLOG=16000
OptLev=1
GSL=f
CLEANUP=f
NORUN=f
QUICK=f
NOMAKE=f
NOGENMAKE=f
NOCLEAN=f
NODEPEND=f
POSTCLEAN=0
BASH=
OPTFILE=NONE
ADDRESSES=
TESTDIRS=
SKIPDIRS=
MPACKDIR="../tools/mpack-1.6"
HAVE_MPACK=
MPACK=
SENDCMD=
SAVDIR='.'
COMMAND=
MKDEPEND=
if test "x$MAKE" = x ; then
MAKE=make
fi
MAKE_CMD=
if test "x$CC" = x ; then
CC=cc
fi
JOBS=
TARG=
MPI=0
MPI_MFILE=
MULTI_THREAD=f
OUTDIR=
DELDIR=
USE_R4=
EXTRFLG=
NOCATAD=
MKSMALLF=
#- type of testing (KIND):
# KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ;
# KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD
KIND=0
# list of pTracers to check for monitor output
PTRACERS_NUM="1 2 3 4 5"
MATCH_CRIT=10
printf "parsing options... "
ac_prev=
for ac_option ; do
# If the previous option needs an argument, assign it.
if test -n "$ac_prev"; then
eval "$ac_prev=\$ac_option"
ac_prev=
continue
fi
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
case $ac_option in
-help | --help | -h | --h) usage ;;
-optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
-optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
-addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
-addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
-mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
-send | --send ) ac_prev=SENDCMD ;;
-send=* | --send=* ) SENDCMD=$ac_optarg ;;
-savdir | --savdir | -sd | --sd ) ac_prev=SAVDIR ;;
-savdir=* | --savdir=* | -sd=* | --sd=* ) SAVDIR=$ac_optarg ;;
-tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
-tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
-skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
-skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
-bash | --bash | -b | --b) ac_prev=BASH ;;
-bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
-command | --command | -c | --c) ac_prev=COMMAND ;;
-command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
-makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
-makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
-make | --make | -m | --m) ac_prev=MAKE ;;
-make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
-repl_mk | --repl_mk ) ac_prev=MAKE_CMD ;;
-repl_mk=* | --repl_mk=*) MAKE_CMD=$ac_optarg ;;
-odir | --odir) ac_prev=OUTDIR ;;
-odir=* | --odir=*) OUTDIR=$ac_optarg ;;
-ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
-match | --match ) ac_prev=MATCH_CRIT ;;
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
-j | --j) ac_prev=JOBS ;;
-j=* | --j=*) JOBS=$ac_optarg ;;
-ef | --ef) ac_prev=EXTRFLG ;;
-ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
-clean | --clean) CLEANUP=t ; DELDIR=t ;;
-norun | --norun | -nr | --nr) NORUN=t ;;
-obj | --obj ) TARG='obj' ; NORUN=t ;;
-src | --src ) TARG='small_f' ; NORUN=t ;;
-runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
-quick | --quick | -q | --q) QUICK=t ;;
-nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
-noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
-nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
-postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
-deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
-mpi | --mpi) MPI=2 ;;
-MPI | --MPI) ac_prev=MPI ;;
-MPI=* | --MPI=*) MPI=$ac_optarg ;;
-mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
-mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
-mth) MULTI_THREAD=t ;;
-tlm) if test $KIND = 0 ; then KIND=1 ; else
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
fi ;;
-adm | -ad) if test $KIND = 0 ; then KIND=2 ; else
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
fi ;;
-oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage
fi ;;
-ncad) NOCATAD=t ;;
-small_f) MKSMALLF=t ;;
-ieee) echo "Warning: ignore option '-ieee' (already the default)"
printf " ... " ;;
-noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
-fast) OptLev=`expr $OptLev \* 2` ;;
-devel) OptLev=0 ;;
-gsl) GSL=t ;;
-verbose) verbose=2 ;;
-debug) debug=1 ;;
-quiet) verbose=0 ;;
-deldir | -dd) DELDIR=t ;;
-use_r4|-ur4) USE_R4=t ;;
-ts) TS=t;;
-papis) PAPIS=t;;
-pcls) PCLS=t;;
-*) echo "Error: unrecognized option: "$ac_option
usage ;;
*) echo "Error: unrecognized argument: "$ac_option
usage ;;
esac
done
if test "x$QUICK" = xt ; then
NOGENMAKE=t
NOCLEAN=t
NODEPEND=t
fi
if test "x$MAKE_CMD" = x ; then MAKE_CMD=$MAKE ; fi
#- check length of MPI machine file:
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
if test -r $MPI_MFILE ; then
nl=`wc -l $MPI_MFILE | awk '{print $1}'`
if [ $nl -lt $MPI ] ; then
echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
usage
fi
if [ $verbose -gt 1 ]; then
echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
fi
else
echo "Error: cannot access MPI_MFILE=$MPI_FILE"
usage
fi
fi
#- setting for forward or ADM testing
if test $KIND = 1 ; then
if test "x$TARG" = xsmall_f ; then TARG=ftltaf ; else TARG=ftlall ; fi
code_dir=code_ad
inputdir=input_ad
ref_outp="output_tlm.txt"
EXECUTABLE="mitgcmuv_ftl"
elif test $KIND = 2 ; then
if test "x$TARG" = x ; then TARG=adall ; fi
if test "x$TARG" = xobj ; then TARG=adobj ; fi
if test "x$TARG" = xsmall_f ; then TARG=adtaf ; fi
code_dir=code_ad
inputdir=input_ad
ref_outp="output_adm.txt"
EXECUTABLE="mitgcmuv_ad"
elif test $KIND = 4 ; then
TARG=adAll
code_dir=code_oad
inputdir=input_oad
ref_outp="output_oadm.txt"
EXECUTABLE="mitgcmuv_ad"
else
code_dir=code
inputdir=input
ref_outp="output.txt"
EXECUTABLE="mitgcmuv"
fi
if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
xx=`echo $TESTDIRS | awk '{print $1}'`
if test "x$TESTDIRS" = x ; then
LIST=`scandirs results/$ref_outp`
elif test $xx = 'start_from' ; then
xx=`echo $TESTDIRS | awk '{print $2}'`
LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
else
#- expand group of experiments:
LIST=" "
for xx in $TESTDIRS
do
case $xx in
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
;;
'tutorials')
LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
*) LIST=${LIST}" "$xx ;;
esac
done
fi
#echo 'LIST='${LIST}'<'
#- skip dirs, remove duplicate and non-directory:
TESTDIRS=" "
count=0
for xx in $LIST
do
yy=`echo $SKIPDIRS | grep -c $xx`
if test $yy = 0 ; then
if test -d $xx ; then
yy=`echo $TESTDIRS | grep -c $xx`
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
else count=1 ;
echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
fi
else
if test $count = 1 ; then echo -n ", \"$xx\""
else count=1 ; echo "" ; echo -n " skip: \"$xx\""
fi
fi
done
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
#echo 'TESTDIRS='${TESTDIRS}'<'
LOC_MFILE='tr_mpi_mfile'
RUNLOG="run.tr_log"
if test "x$MPI" = x0 ; then
OUTPUTFILE=$ref_outp
if test "x$COMMAND" = x ; then COMMAND="./$EXECUTABLE > $OUTPUTFILE" ; fi
else
OUTPUTFILE="STDOUT.0000"
if test "x$COMMAND" = x ; then COMMAND="mpirun -np TR_NPROC ./$EXECUTABLE" ; fi
fi
echo "OK (COMMAND='$COMMAND')"
#TMP=./tr_$$
#- try to put temporary files in system-local /tmp dir
TMP=/tmp/tr_${USER}_$$
touch $TMP ; retVal=$?
if [ $retVal -eq 0 ] ; then
if test ! -r $TMP ; then TMP=./tr_$$ ; fi
else
TMP=./tr_$$
fi
rm -f $TMP
if [ $verbose -gt 1 ]; then echo " temp files: $TMP" ; fi
# set the Default List of output variables to be checked:
# (use default or load experiment-specific list from file "tr_checklist")
# content : 1rst = main variable used to decide if it pass or FAIL
# others = number of matching digits to be printed in summary.txt
if test $KIND = 1 ; then
DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd'
EMPTY_RESULTS='.. .. ..'
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
elif test $KIND = 2 -o $KIND = 4 ; then
DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
EMPTY_RESULTS='.. .. ..'
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
else
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
fi
# create the FORTRAN comparison code
if test "x$CLEANUP" = xt -o -x tr_cmpnum ; then
echo "skipping comparison code build"
else
createcodelet
fi
# build the mpack utility (if ADDRESSES = NONE, do it to test the build)
if test "x$ADDRESSES" = x -o "x$SENDCMD" != x ; then
echo "skipping mpack build"
else
build_mpack
if test "x$HAVE_MPACK" = xt ; then SENDCMD=$MPACK ; fi
fi
# Create a uniquely named directory to store results
CMDLINE=$0
for xx in "$@" ; do nw=`echo $xx | wc -w`
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" ; else
nb=`echo $xx | grep -c '='`
if test $nb = 0 ; then CMDLINE="$CMDLINE '$xx'"
else yy=`echo "$xx'" | sed "s/=/='/"` ;
CMDLINE="$CMDLINE $yy" ; fi
fi
done
MACH=`hostname`
UNAMEA=`uname -a`
DATE=`date +%Y%m%d`
BASE="tr_"$MACH"_"$DATE"_"
if test "x$OUTDIR" != x ; then
BASE="tr_"$OUTDIR"_"$DATE"_"
else
#short_name=`hostname -s | tr '[:upper:]' '[:lower:]'`
# hostname -s is not universal (does work on AIX system)
short_name=`hostname | sed 's/\..*$//' | tr '[:upper:]' '[:lower:]'`
BASE="tr_"$short_name"_"$DATE"_"
fi
DNUM=0
DRESULTS="$BASE$DNUM"
while test -e $DRESULTS ; do
DNUM=$(( $DNUM + 1 ))
DRESULTS="$BASE$DNUM"
done
mkdir $DRESULTS
RETVAL=$?
if test "x$RETVAL" != x0 ; then
echo "ERROR: Can't create results directory \"./$DRESULTS\""
exit 1
fi
SUMMARY="$DRESULTS/summary.txt"
start_date=`date`
echo $start_date > $SUMMARY
echo 'run:' $CMDLINE >> $SUMMARY
echo 'on :' $UNAMEA >> $SUMMARY
of_path=
if test "x$OPTFILE" != xNONE ; then
if test -r $OPTFILE ; then
# get the path
path=${OPTFILE%/*}
if test "x$path" = x ; then
of_path=`pwd`
else
of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
fi
file=${OPTFILE##*/}
OPTFILE=$of_path/$file
cp $OPTFILE $DRESULTS
echo >> $SUMMARY
echo " OPTFILE=$OPTFILE" >> $SUMMARY
else
echo | tee -a $SUMMARY
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee -a $SUMMARY
exit 1
fi
else
echo >> $SUMMARY
echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
#-note: to be filled later after 1rst run
fi
echo
echo >> $SUMMARY
if test $KIND = 0 ; then
line_0=`printf '%s %2i' 'default' $MATCH_CRIT`
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
line_1="G D M c m s m s m s m s"
line_2="e p a R g m m e . m m e . m m e . m m e ."
line_3="n n k u 2 i a a d i a a d i a a d i a a d"
line_4="2 d e n d n x n . n x n . n x n . n x n ."
for ii in $PTRACERS_NUM ; do
line_0="$line_0 --PTR 0"$ii"--"
line_1="$line_1 m s"
line_2="$line_2 m m e ."
line_3="$line_3 i a a d"
line_4="$line_4 n x n ."
done
else
line_0=`printf '%s %2i' 'default ' $MATCH_CRIT`
if test $KIND = 1 ; then
#echo "TANGLIN=true" >> $SUMMARY
echo "TangLin generated by TAF" >> $SUMMARY
elif test $KIND = 3 ; then
echo "TangLin generated by OpenAD" >> $SUMMARY
elif test $KIND = 2 ; then
#echo "ADJOINT=true" >> $SUMMARY
echo "Adjoint generated by TAF" >> $SUMMARY
else
echo "Adjoint generated by OpenAD" >> $SUMMARY
fi
if test $KIND = 1 -o $KIND = 3 ; then
line_1="G D M C T F"
line_2="e p a R o L D"
else
line_1="G D M C A F"
line_2="e p a R o d D"
fi
line_3="n n k u s G G"
line_4="2 d e n t r r"
echo >> $SUMMARY
fi
if test "x$CLEANUP" != xt ; then
echo "$line_0" | tee -a $SUMMARY
echo "$line_1" | tee -a $SUMMARY
echo "$line_2" | tee -a $SUMMARY
echo "$line_3" | tee -a $SUMMARY
echo "$line_4" | tee -a $SUMMARY
echo "" | tee -a $SUMMARY
fi
echo "-------------------------------------------------------------------------------"
# ...and each test directory...
for dir in $TESTDIRS ; do
# set builddir & rundir:
builddir="build"
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
rundir="run"
pfxdir="tr_$rundir"
if test ! -d $dir/$rundir ; then
rundir=$builddir
fi
CODE_DIR=$dir/$code_dir
BUILD_DIR=$dir/$builddir
# Cleanup only!
if test "x$CLEANUP" = xt ; then
echo -n ' --- dir:' $BUILD_DIR ': '
makeclean $BUILD_DIR
( cd $BUILD_DIR
rm -f $EXECUTABLE *.bak
rm -f genmake_state genmake_*optfile genmake.log
rm -f SIZE.h.mpi genmake.tr_log make.tr_log
rm -rf mpi_headers
)
if test -d $dir/$rundir/CVS ; then
echo -n ' --- dir:' $dir/$rundir ': '
run_clean $dir/$rundir
fi
trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
ttd=`echo $trdir | wc -w`
if test $ttd != 0 ; then
echo ' --- rm dir:' $trdir
( cd $dir ; rm -rf $trdir )
fi
continue
fi
# Verify that the testdir exists and contains previous
# results in the correct location--or skip this directory!
fout=$dir"/results/"$ref_outp
#if test ! -r $fout ; then
if test ! -r $fout -a ! -r ${fout}.gz ; then
echo "can't read \"$fout\" -- skipping $dir"
continue
fi
# Check for specific files for particular type of run
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
continue
fi
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
continue
fi
if test "x$MPI" != "x0" ; then
ntx=1 ; nty=1
if test "x$MULTI_THREAD" = "xt" ; then
ff=$dir"/input/eedata.mth"
ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
if test "x$ntx" = x ; then ntx=1 ; fi
if test "x$nty" = x ; then nty=1 ; fi
fi
#- create new SIZE.h with no more than '$MPI' Procs
mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty
LOC_NPROC=$?
( cd $BUILD_DIR
if test -r SIZE.h.mpi ; then
cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
else RETVAL=1
fi
if test "x$RETVAL" = x0 ; then
rm -f tr_size.mpi
else
rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
fi
)
if test "x$MPI_MFILE" != x ; then
#- create new MPI machine-file with the right number of Procs
rm -f $LOC_MFILE
cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
nl=`wc -l $LOC_MFILE | awk '{print $1}'`
if [ $nl -lt $LOC_NPROC ] ; then
rm -f $LOC_MFILE
cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
#sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
fi
if [ $verbose -gt 1 ]; then
nl=`wc -l $LOC_MFILE | awk '{print $1}'`
echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
fi
fi
if test "x$MULTI_THREAD" = "xt" ; then
retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
if test $retv != 0 ; then
echo "input/eedata.mth tiling misfit -- skipping $dir"
continue
fi
fi
fi
# Check whether there are "extra runs" for this testdir
extra_runs=
if test "x$NORUN" = xf ; then
ex_run_dirs=`( cd $dir ; ls -d $inputdir.* 2> /dev/null )`
fi
#echo "ex_run_dirs='$ex_run_dirs'"
for exd in $ex_run_dirs ; do
name=`echo $exd | sed -e "s/$inputdir\.//"`
refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
outf="$dir/results/$refExOut"
if test -r $outf -o -r ${outf}.gz ; then
if test "x$MULTI_THREAD" = "xt" ; then
if test -r $dir"/"$exd"/eedata.mth" ; then
if test "x$MPI" = "x0" ; then
extra_runs="$extra_runs $name"
else
retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
if test $retv = 0 ; then
extra_runs="$extra_runs $name"
else
echo $exd"/eedata.mth tiling misfit -- skipping $dir"
fi
fi
#else echo $dir"/"$exd"/eedata.mth: not found"
fi
else
extra_runs="$extra_runs $name"
fi
fi
done
echo
if test "x$extra_runs" = "x" ; then
echo "Experiment: $dir"
else
echo "Experiment: $dir ; extra_runs=$extra_runs"
fi
echo
unset genmake makedepend make run
results=$EMPTY_RESULTS
# Create an output dir & summary.txt file for each tested experiment (tdir)
locDIR=$DRESULTS"/"$dir
mkdir $locDIR
#- report to this experiment local summary file ---
echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
echo "MACH='$MACH'" >> $locDIR"/summary.txt"
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
CDIR=`pwd`"/$locDIR"
if test "x$NORUN" = xt ; then
run=N
genmakemodel $dir/$builddir && genmake=Y \
&& makeclean $dir/$builddir \
&& symlink_mpifiles $dir $code_dir $builddir \
&& makedependmodel $dir/$builddir && makedepend=Y \
&& makemodel $dir/$builddir && make=Y
echo
else
genmakemodel $dir/$builddir && genmake=Y \
&& makeclean $dir/$builddir \
&& symlink_mpifiles $dir $code_dir $builddir \
&& makedependmodel $dir/$builddir && makedepend=Y \
&& makemodel $dir/$builddir && make=Y \
&& run_clean $dir/$rundir \
&& linkdata $dir/$rundir $inputdir \
&& runmodel $dir/$rundir && run=Y \
&& results=`testoutput_run $dir $rundir $ref_outp`
echo 1>&2
fi
#echo "results='$results'"
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
for ex in $extra_runs ; do
unset run
results=$EMPTY_RESULTS
# reference output file
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
# Create an output dir & summary.txt file for each extra run (tdir.ex)
locDIR=$DRESULTS"/"$dir"."$ex
mkdir $locDIR
#- report to this experiment local summary file ---
echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
#echo "MACH='$MACH'" >> $locDIR"/summary.txt"
#echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
CDIR=`pwd`"/$locDIR"
test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
run_clean $dir/$pfxdir.$ex
linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
runmodel $dir/$pfxdir.$ex && run=Y \
&& results=`testoutput_run $dir $pfxdir.$ex $refExOut`
echo 1>&2
fres=`formatresults $dir.$ex ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
if test "x$POSTCLEAN" = x2 ; then
run_clean $dir/$pfxdir.$ex
fi
done
if test ! -f $DRESULTS"/"genmake_state ; then
if test -f $dir/$builddir/Makefile ; then
mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
# sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
# bsd-sed cannot do the above code
cat $dir/$builddir/Makefile | \
sed -n '/^# executed by:/{N
p
}' >> $DRESULTS/genmake_state
echo " $mkOpt" >> $DRESULTS/genmake_state
if test "x$OPTFILE" = xNONE ; then
eval $mkOpt
# sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
# $SUMMARY > tmp.tr_log
# bsd-sed requires a newline after "a\":
sed "/^No \"OPTFILE\" was specified ; genmake2/a\\
OPTFILE=${OPTFILE}" $SUMMARY > tmp.tr_log
RETVAL=$?
if test "x$RETVAL" = x0 ; then
cp -f tmp.tr_log $SUMMARY
fi
rm -f tmp.tr_log
fi
gmkLog=$dir/$builddir/genmake.log
if test -r $gmkLog ; then
grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
RETVAL=$?
if test "x$RETVAL" = x0 ; then
echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
echo "extract compiler version:" >> $DRESULTS/genmake_state
sed -n '/Get compiler version/,/<-- compiler version/p' \
$gmkLog | grep -v '^... compiler version ' > tmp.tr_log
sed -n '1p' tmp.tr_log >> $DRESULTS/genmake_state
sed -n '2,/^$/p' tmp.tr_log | sed '/^$/d' | sed 's/^./ &/' \
>> $DRESULTS/genmake_state
rm -f tmp.tr_log
fi
fi
gmkLog=$dir/$builddir/genmake_state
if test -r $gmkLog ; then
echo -n "from '$gmkLog', " >> $DRESULTS/genmake_state
echo "get genmake settings:" >> $DRESULTS/genmake_state
sed -n '/^HAVE_/p' $gmkLog | sed 's/^./ &/' \
>> $DRESULTS/genmake_state
fi
fi
fi
#postclean $dir/$builddir
if test "x$POSTCLEAN" = x2 ; then
makeclean $dir/$builddir \
&& run_clean $dir/$rundir
fi
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
echo "-------------------------------------------------------------------------------"
done
printf "Start time: " >> $SUMMARY
echo "$start_date" >> $SUMMARY
printf "End time: " >> $SUMMARY
date >> $SUMMARY
# If addresses were supplied and mpack built successfully, then try
# to send email using mpack.
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
echo "No results email was sent."
else
if test "x$SENDCMD" != x ; then
if [ $verbose -gt 1 ]; then
echo " run: $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES"
fi
tar -cf ${SAVDIR}/${DRESULTS}".tar" $DRESULTS > /dev/null 2>&1 \
&& gzip ${SAVDIR}/${DRESULTS}".tar" \
&& $SENDCMD -s MITgcm-test -m 3555000 ${SAVDIR}/${DRESULTS}".tar.gz" $ADDRESSES
RETVAL=$?
if test "x$RETVAL" != x0 ; then
echo
echo "Warning: The tar, gzip, & mpack step failed. Please send email"
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
echo " summary of results from the directory \"$DRESULTS\"."
echo
else
echo
echo "An email containing results was sent to the following addresses:"
echo " \"$ADDRESSES\""
echo
test -f ${SAVDIR}/${DRESULTS}".tar" && rm -f ${SAVDIR}/${DRESULTS}".tar"
test -f ${SAVDIR}/${DRESULTS}".tar.gz" && rm -f ${SAVDIR}/${DRESULTS}".tar.gz"
fi
fi
fi
if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
rm -f tr_cmpnum.c tr_cmpnum
fi
if test "x$CLEANUP" != xt ; then
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
if test -e tr_out.txt ; then
mv tr_out.txt tr_out.txt.old
fi
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
fi
if test "x$DELDIR" = xt ; then
rm -rf $DRESULTS
fi
echo "======== End of testreport execution ========"
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