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run_singularity_images.sh
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Fri, Oct 4, 07:31
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text/x-shellscript
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Sun, Oct 6, 07:31 (1 d, 23 h)
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R2915 eSCT pipeline interoperability
run_singularity_images.sh
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#!/bin/bash
# loop over the YAML files
for YAMLFILE in *.yaml;
do
# run the image
echo "*****************************************"
echo "********** Running ${YAMLFILE} **********"
echo "*****************************************"
singularity-pipeline -p ${YAMLFILE} build
singularity-pipeline -p ${YAMLFILE} run
singularity-pipeline -p ${YAMLFILE} test
done;
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