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R2915/SIS/MPI/LSF_submission_logs/test_03/mpi_singul_v1103_single_node_n4.out
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mpi_singul_v1103_single_node_n4.out
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Sender: LSF System <lsfadmin@lo-a2-028>
Subject: Job 10013: <mpi_singul_v1103_single_node_n4> in cluster <leonhard> Exited
Job <mpi_singul_v1103_single_node_n4> was submitted from host <lo-login-02> by user <balazsl> in cluster <leonhard> at Wed Aug 23 09:11:18 2017.
Job was executed on host(s) <4*lo-a2-028>, in queue <normal.4h>, as user <balazsl> in cluster <leonhard> at Wed Aug 23 09:11:44 2017.
</cluster/home/balazsl> was used as the home directory.
</cluster/home/balazsl/esct-pipeline-interoperability/SIS/MPI> was used as the working directory.
Started at Wed Aug 23 09:11:44 2017.
Terminated at Wed Aug 23 09:11:50 2017.
Results reported at Wed Aug 23 09:11:50 2017.
Your job looked like:
------------------------------------------------------------
# LSBATCH: User input
#!/bin/bash
#BSUB -o mpi_singul_v1103_single_node_n4.out
#BSUB -J mpi_singul_v1103_single_node_n4
#BSUB -n 4
mpirun singularity exec mpi_hello_world-1103.img /mpi_hello_world/mpi_hello_world
------------------------------------------------------------
Exited with exit code 1.
Resource usage summary:
CPU time : 1.29 sec.
Max Memory : 12 MB
Average Memory : -
Total Requested Memory : 4096.00 MB
Delta Memory : 4084.00 MB
Max Swap : -
Max Processes : 8
Max Threads : 13
Run time : 14 sec.
Turnaround time : 32 sec.
The output (if any) follows:
/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
--------------------------------------------------------------------------
A requested component was not found, or was unable to be opened. This
means that this component is either not installed or is unable to be
used on your system (e.g., sometimes this means that shared libraries
that the component requires are unable to be found/loaded). Note that
Open MPI stopped checking at the first component that it did not find.
Host: lo-a2-028
Framework: ess
Component: pmi
--------------------------------------------------------------------------
[lo-a2-028:35916] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c at line 129
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_base_open failed
--> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
A requested component was not found, or was unable to be opened. This
means that this component is either not installed or is unable to be
used on your system (e.g., sometimes this means that shared libraries
that the component requires are unable to be found/loaded). Note that
Open MPI stopped checking at the first component that it did not find.
Host: lo-a2-028
Framework: ess
Component: pmi
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: ompi_rte_init failed
--> Returned "Not found" (-13) instead of "Success" (0)
--------------------------------------------------------------------------
[lo-a2-028:35919] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c at line 129
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
[lo-a2-028:35916] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_base_open failed
--> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: ompi_rte_init failed
--> Returned "Not found" (-13) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
[lo-a2-028:35919] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
--------------------------------------------------------------------------
A requested component was not found, or was unable to be opened. This
means that this component is either not installed or is unable to be
used on your system (e.g., sometimes this means that shared libraries
that the component requires are unable to be found/loaded). Note that
Open MPI stopped checking at the first component that it did not find.
Host: lo-a2-028
Framework: ess
Component: pmi
--------------------------------------------------------------------------
[lo-a2-028:35913] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c at line 129
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_base_open failed
--> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: ompi_rte_init failed
--> Returned "Not found" (-13) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
[lo-a2-028:35913] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
--------------------------------------------------------------------------
A requested component was not found, or was unable to be opened. This
means that this component is either not installed or is unable to be
used on your system (e.g., sometimes this means that shared libraries
that the component requires are unable to be found/loaded). Note that
Open MPI stopped checking at the first component that it did not find.
Host: lo-a2-028
Framework: ess
Component: pmi
--------------------------------------------------------------------------
[lo-a2-028:35909] [[INVALID],INVALID] ORTE_ERROR_LOG: Not found in file runtime/orte_init.c at line 129
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
orte_ess_base_open failed
--> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):
ompi_mpi_init: ompi_rte_init failed
--> Returned "Not found" (-13) instead of "Success" (0)
--------------------------------------------------------------------------
*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
*** and potentially your MPI job)
[lo-a2-028:35909] Local abort before MPI_INIT completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpirun detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:
Process name: [[49444,1],3]
Exit code: 1
--------------------------------------------------------------------------
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