create_and_run_container_locally.sh
917c7dbef8a7master

create_and_run_container_locally.sh
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			#!/usr/bin/env bash
			IMAGE_NAME=hello_world_pipeline_light
			# remove old container
			rm -rf ${IMAGE_NAME}*.img
			# build the Docker container using the "Dockerfile"
			sudo docker build -t ${IMAGE_NAME} .
			# convert the Docker container to a Singularity image
			#sudo docker run -v /var/run/docker.sock:/var/run/docker.sock -v $(pwd):/output --privileged -t --rm singularityware/docker2singularity ${IMAGE_NAME}
			#./docker2singularity.sh ${IMAGE_NAME}
			sudo docker run -v /var/run/docker.sock:/var/run/docker.sock -v $(pwd):/output --privileged -t --rm my_docker2_singularity ${IMAGE_NAME}
			# rename the image
			mv ${IMAGE_NAME}*.img ${IMAGE_NAME}.img
			# run the image with some binding
			singularity run -B ./pipeline:/pipeline -B ./data:/data ${IMAGE_NAME}.img