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f9d26fef981bmaster

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			FROM centos:7.3.1611

			RUN echo "Here we are installing software and other dependencies for the container!"
			RUN echo "Installing STAR"
			RUN yum -y install make gcc gcc-c++ zlib-devel
			RUN curl -o /usr/local/src/STAR-2.5.2b.tar.gz https://codeload.github.com/alexdobin/STAR/tar.gz/2.5.2b
			RUN cd /usr/local/src && tar xf STAR-2.5.2b.tar.gz
			RUN cd /usr/local/src/STAR-2.5.2b/source && make STAR && make STARlong
			RUN cp /usr/local/src/STAR-2.5.2b/source/{STAR,STARlong} /usr/local/bin

			RUN echo "Installing HTSeq and Pysam"
			RUN yum -y install epel-release
			RUN yum -y install make gcc gcc-c++ zlib-devel python-devel python-pip numpy
			RUN pip install HTSeq==0.6.1p1
			RUN pip install Pysam==0.9.0
			RUN yum clean all

			RUN mkdir /data

			ENTRYPOINT ["echo", "-e", "This container includes the following apps:\\n\
			STAR version 2.5.2b - https://github.com/alexdobin/STAR\\n\
			HTSeq version 0.6.1p1 - http://www-huber.embl.de/HTSeq/\\n\
			Pysam version 0.9.0 - https://github.com/pysam-developers/pysam\\n\
			To execute a binary inside the container do \"singularity exec /path/to/container.img binary-name\""]