slurm-submit-script-WITH-containers.sh
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	#!/bin/bash

	#SBATCH --job-name=pipeline2-containers
	#SBATCH --partition=sing
	#SBATCH --time=00:10:00
	#SBATCH --cpus-per-task=4
	#SBATCH --mem=10G
	#SBATCH --output=containers.log
	#SBATCH --mail-user=alexander.kashev@math.unibe.ch

	# define the number of cpus to use
	# you can use env vars provided by your scheduler or hardcode the number of cpus to use
	export NUM_CPUS=${SLURM_CPUS_PER_TASK}

	# Actual pipeline run+test
	./pipeline.py test