melarray_deploy_enhancer_lsf.yaml
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melarray_deploy_enhancer_lsf.yaml
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			name: melarray
			version: 5.2
			author: Balazs Laurenczy
			author_org: ETHZ
			build:
			size: 16384
			type: pull
			source: docker://sissource.ethz.ch:5005/balazsl/usz/melarray:5.2

			run:
			commands:
			- 'snakemake -p -k -c "bsub -n 4 -W 23:59 -R \"rusage[mem=4096]\" -R singularity" -j 16 --restart-times 1 --config config=enhancer subworkflows=TrimAlign,GATK,HaploCaller --omit-from create_gvcf_list'

			test:
			test_files:
			- 'data/extra_files/151127_out_b37.bed'
			- 'ref/b37'
			prepare_commands:
			- 'wget -O 20180426_melarray_test_data.tar https://polybox.ethz.ch/index.php/s/QkoXTF0vy1ijEPe/download'
			- 'tar -xvf 20180426_melarray_test_data.tar'
			validate_commands:
			- './create_validation.sh && diff -q validation.md5 ref_validation.md5'