create_and_run_container_locally.sh
42362601403bpublic

create_and_run_container_locally.sh
View Options

			#!/usr/bin/env bash
			# remove old container
			rm -rf *.img
			# build the Docker container using the "Dockerfile"
			sudo docker build -t hello_world_basic .
			# convert the Docker container to a Singularity image
			sudo docker run -v /var/run/docker.sock:/var/run/docker.sock -v /vagrant/hello_world_basic:/output --privileged -t --rm singularityware/docker2singularity hello_world_basic
			# rename the image
			mv hello_world_basic*.img hello_world_basic.img
			# run the image with some binding
			singularity run -B ./pipeline:/pipeline -B ./data:/data hello_world_basic.img