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cleanRuns.py
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Created
Tue, Jun 11, 13:00
Size
4 KB
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text/x-python
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Thu, Jun 13, 13:00 (2 d)
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blob
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Handle
18242135
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R3127 blackdynamite
cleanRuns.py
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#!/usr/bin/env python3
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
import
BlackDynamite
as
BD
import
os
import
sys
import
socket
import
re
import
shutil
import
yaml
import
tqdm
################################################################
def
validate
(
question
):
if
params
[
"truerun"
]
is
True
:
validated
=
BD
.
bdparser
.
validate_question
(
question
,
params
)
else
:
print
(
"{0}? Forced N"
.
format
(
question
))
validated
=
False
return
validated
parser
=
BD
.
BDParser
()
parser
.
register_params
(
"clearRun"
,
params
=
{
"run_id"
:
int
,
"clean_orphans"
:
str
,
"machine_name"
:
str
,
"constraints"
:
[
str
],
"delete"
:
bool
},
defaults
=
{
"machine_name"
:
socket
.
gethostname
(),
"delete"
:
False
,
},
help
=
{
"machine_name"
:
"Machine name for desired runs"
,
"delete"
:
"Entirely remove runs from database"
,
"run_id"
:
"ID of a specific run"
}
)
params
=
parser
.
parseBDParameters
()
fname
=
'bd.yaml'
with
open
(
fname
)
as
f
:
config
=
yaml
.
load
(
f
,
Loader
=
yaml
.
SafeLoader
)
if
'study'
in
config
:
params
[
'study'
]
=
config
[
'study'
]
if
"run_id"
in
params
:
if
"constraints"
not
in
params
:
params
[
"constraints"
]
=
[]
params
[
"constraints"
]
.
append
(
"runs.id = "
+
str
(
params
[
"run_id"
]))
if
"machine_name"
in
params
:
if
"constraints"
in
params
:
params
[
"constraints"
]
.
append
(
"machine_name = "
+
params
[
"machine_name"
])
else
:
params
[
"constraints"
]
=
[
"machine_name = "
+
params
[
"machine_name"
]]
base
=
BD
.
Base
(
**
params
)
runSelector
=
BD
.
RunSelector
(
base
)
if
"clean_orphans"
in
params
:
run_list
=
runSelector
.
selectRuns
([])
run_ids
=
[
r
.
id
for
r
,
j
in
run_list
]
resdir
=
params
[
"clean_orphans"
]
+
"/BD-"
+
params
[
"study"
]
+
"-runs"
print
(
"clean orphans from "
+
resdir
)
if
not
os
.
path
.
exists
(
resdir
):
print
(
"Directory '"
+
resdir
+
"' do not exists"
)
sys
.
exit
(
-
1
)
to_delete
=
{}
for
filename
in
os
.
listdir
(
resdir
):
fullname
=
os
.
path
.
join
(
resdir
,
filename
)
# print(fullname)
if
(
os
.
path
.
isdir
(
fullname
)):
match
=
re
.
match
(
"run-([0-9]+)"
,
filename
)
if
(
match
):
# print(filename)
id
=
int
(
match
.
group
(
1
))
if
(
id
not
in
run_ids
):
to_delete
[
id
]
=
fullname
if
(
len
(
to_delete
.
keys
())
==
0
):
print
(
"No orphans found"
)
sys
.
exit
(
0
)
validated
=
validate
(
"Delete output from runs "
+
str
(
to_delete
.
keys
()))
if
(
validated
):
for
id
,
fullname
in
to_delete
.
items
():
# print("Delete output from run " + str(id))
shutil
.
rmtree
(
fullname
)
sys
.
exit
(
0
)
runSelector
=
BD
.
RunSelector
(
base
)
run_list
=
runSelector
.
selectRuns
(
params
,
quiet
=
True
)
if
(
len
(
run_list
)
==
0
):
print
(
"No runs selected"
)
sys
.
exit
()
delete_flag
=
params
[
"delete"
]
if
delete_flag
:
validated
=
validate
(
f
"Delete {len(run_list)} runs"
)
else
:
validated
=
validate
(
f
"Reset {len(run_list)} runs"
)
for
i
,
(
r
,
j
)
in
enumerate
(
tqdm
.
tqdm
(
run_list
)):
if
"run_path"
in
r
:
run_path
=
r
[
"run_path"
]
else
:
run_path
=
None
if
run_path
:
if
os
.
path
.
exists
(
run_path
):
if
(
validated
):
# print("Deleting directory: " + run_path)
shutil
.
rmtree
(
run_path
)
else
:
# print("Simulate deletion of directory: " + run_path)
pass
else
:
print
(
"output directory: '"
+
run_path
+
"' not found: are we on the right machine ?"
)
if
delete_flag
:
if
validated
:
# print("Deleting run " + str(r.id) + " from base")
r
.
delete
()
else
:
print
(
"Simulate deletion of run "
+
str
(
r
.
id
)
+
" from base"
)
else
:
if
validated
:
# print("Deleting data associated with run " + str(r.id))
r
.
deleteData
()
r
[
"STATE"
]
=
"CREATED"
r
[
"start_time"
]
=
None
r
.
update
()
else
:
# print("Simulate deletion of data associated with run " + str(r.id))
pass
if
i
%
1000
==
0
:
# if truerun, commit the changes to the base
if
params
[
"truerun"
]
is
True
:
base
.
commit
()
if
validated
:
base
.
pack
()
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