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runLM.py
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Mon, May 6, 12:14

runLM.py
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#!/usr/bin/env python3
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
from __future__ import print_function
from . import conffile
from . import run
from . import bdparser
class RunLM(run.Run):
"""
"""
def attachToJob(self, job):
if "exec" not in self.entries:
self.createLaunchFile()
if "lm_conf" in self.entries:
self.addConfigFiles([self.entries["lm_conf"]])
run.Run.attachToJob(self, job)
def addConfigFiles(self, file_list, regex_params='LET\s+%p\s*=\s*%v'):
run.Run.addConfigFiles(self, file_list, regex_params=regex_params)
return self.configfiles
def createLaunchFile(self):
self.execfile = conffile.addFile("launch.sh", self.base,
content="""
export HOST=__BLACKDYNAMITE__dbhost__
export SCHEMA=__BLACKDYNAMITE__study__
export RUN_ID=__BLACKDYNAMITE__run_id__
export DEBUG_LEVEL=0
mpirun __BLACKDYNAMITE__mpi_option__ -np __BLACKDYNAMITE__nproc__ \
__BLACKDYNAMITE__amel_path__ __BLACKDYNAMITE__lm_conf__ \
__BLACKDYNAMITE__nsteps__
if [ $? != 0 ]; then
updateRuns.py --study=$SCHEMA --host=$HOST --run_constraints="id = $RUN_ID" \
--updates="state = LM FAILED" --truerun
fi
""")
self["exec"] = self.execfile.id
return self.execfile
def __init__(self, base):
run.Run.__init__(self, base)
self.types["amel_path"] = str
self.types["nsteps"] = int
self.types["lm_conf"] = str
self.types["mpi_option"] = str
self.types["lm_release_info"] = str
self.allowNull["lm_release_info"] = True
################################################################
class RunLMParser(bdparser.RunParser):
def parseBDParameters(self):
params = bdparser.RunParser.parseBDParameters(self)
return params
def __init__(self):
bdparser.RunParser.__init__(self)
self.mandatory["nsteps"] = True
self.mandatory["amel_path"] = True
self.mandatory["lm_conf"] = True
self.admissible_params["nsteps"] = int
self.help["nsteps"] = "Set the number of steps to run"
self.admissible_params["amel_path"] = str
self.help["amel_path"] = (
"The path to the libmultiscale client executable AMEL")
self.admissible_params["lm_conf"] = str
self.help["lm_conf"] = (
"The name of the configuration file for libmultiscale")
self.admissible_params["mpi_option"] = str
self.help["mpi_option"] = "optional MPI option"
self.default_params["mpi_option"] = " "
self.group_params["RunLM"] = [
"amel_path",
"nsteps",
"lm_conf",
"mpi_option",
"lm_release_info"]
################################################################

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