Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F63521113
studyInfo.py
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Mon, May 20, 17:32
Size
3 KB
Mime Type
text/x-python
Expires
Wed, May 22, 17:32 (2 d)
Engine
blob
Format
Raw Data
Handle
17783367
Attached To
R3127 blackdynamite
studyInfo.py
View Options
#!/usr/bin/env python3
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
from
__future__
import
print_function
################################################################
import
BlackDynamite
as
BD
################################################################
def
printDataBaseInfo
(
base
,
params
):
curs
=
base
.
connection
.
cursor
()
curs
.
execute
(
"select current_database()"
)
datname
=
curs
.
fetchone
()[
0
]
curs
.
execute
(
"""
select d.datname,
pg_catalog.pg_size_pretty(pg_catalog.pg_database_size(d.datname))
from pg_catalog.pg_database d where (d.datname) = ('{0}')
"""
.
format
(
datname
))
datsize
=
curs
.
fetchone
()[
1
]
print
(
"Database:"
,
datname
,
datsize
)
def
printUserInfo
(
base
,
params
):
users
=
base
.
getUserList
()
print
(
'registered Users: {0}'
.
format
(
', '
.
join
(
users
)))
def
printStudyInfo
(
base
,
study
,
params
):
study_size
=
base
.
getStudySize
(
study
)
owner
=
base
.
getStudyOwner
(
study
)
granted_users
=
base
.
getGrantedUsers
(
study
)
print
(
'{0}'
.
format
(
study
))
print
(
' Owner:{:>30} '
.
format
(
owner
))
print
(
' #jobs:{:>30} '
.
format
(
study_size
[
'njobs'
]))
print
(
' #runs:{:>30} '
.
format
(
study_size
[
'nruns'
]))
print
(
' size: {:>30}'
.
format
(
study_size
[
'size'
]))
print
(
' grants: {0}'
.
format
(
','
.
join
(
granted_users
)))
def
fetchInfo
(
base
,
params
):
printUserInfo
(
base
,
params
)
if
"study"
not
in
params
:
study_list
=
base
.
getSchemaList
(
filter_names
=
False
)
else
:
study_list
=
[
base
.
schema
]
printDataBaseInfo
(
base
,
params
)
for
s
in
study_list
:
printStudyInfo
(
base
,
s
,
params
)
def
fetchStudy
(
base
,
params
):
runSelector
=
BD
.
RunSelector
(
base
)
run_list
=
runSelector
.
selectRuns
(
params
,
params
,
quiet
=
True
)
print
(
run_list
)
def
main
(
argv
=
None
):
if
(
type
(
argv
)
==
str
):
argv
=
argv
.
split
()
parser
=
BD
.
BDParser
()
parser
.
register_params
(
group
=
"studyInfo.py"
,
params
=
{
"full"
:
bool
,
"study"
:
str
,
"grant"
:
str
,
"revoke"
:
str
,
"fetch"
:
bool
},
help
=
{
"full"
:
"Say that you want details (can be costful)"
,
"study"
:
"specify a study to analyse"
,
"grant"
:
"specify an user to grant read permission"
,
"revoke"
:
"specify an user to revoke read permission"
,
"fetch"
:
"fetch the specified study as one of yours"
})
params
=
parser
.
parseBDParameters
(
argv
=
argv
)
params
[
"should_not_check_study"
]
=
True
mybase
=
BD
.
Base
(
**
params
)
if
'grant'
in
params
:
mybase
.
grantAccess
(
params
[
'study'
],
params
[
'grant'
])
if
'revoke'
in
params
:
mybase
.
revokeAccess
(
params
[
'study'
],
params
[
'revoke'
])
if
params
[
'fetch'
]
is
True
:
fetchStudy
(
mybase
,
params
)
fetchInfo
(
mybase
,
params
)
if
__name__
==
'__main__'
:
main
()
Event Timeline
Log In to Comment