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bashCoat.py
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Created
Tue, Aug 27, 07:01
Size
1 KB
Mime Type
text/x-python
Expires
Thu, Aug 29, 07:01 (2 d)
Engine
blob
Format
Raw Data
Handle
20187798
Attached To
R3127 blackdynamite
bashCoat.py
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#!/usr/bin/env python
import
run
import
os
,
stat
import
subprocess
import
re
import
socket
admissible_params
=
{
"stdout"
:
None
}
#default_params = {}
help
=
{
"stdout"
:
"Specify if you want the standard output instead of a file"
}
def
launch
(
run
,
params
):
_exec
=
run
.
getExecFile
()
head
=
\
"""#!/bin/bash
export BLACKDYNAMITE_HOST=__BLACKDYNAMITE__dbhost__
export BLACKDYNAMITE_SCHEMA=__BLACKDYNAMITE__study__
export BLACKDYNAMITE_RUN_ID=__BLACKDYNAMITE__run_id__
export BLACKDYNAMITE_USER=$USER
"""
_exec
[
"file"
]
=
run
.
replaceBlackDynamiteVariables
(
head
)
+
_exec
[
"file"
]
f
=
open
(
_exec
[
"filename"
],
'w'
)
f
.
write
(
_exec
[
"file"
])
f
.
close
()
os
.
chmod
(
_exec
[
"filename"
],
stat
.
S_IRWXU
)
print
(
"execute ./"
+
_exec
[
"filename"
])
if
(
params
[
"truerun"
]):
run
[
"state"
]
=
"launched"
run
.
update
()
run
.
commit
()
filename
=
run
[
"run_name"
]
+
".o"
+
str
(
run
.
id
)
filename_err
=
run
[
"run_name"
]
+
".e"
+
str
(
run
.
id
)
with
open
(
filename
,
"w"
)
as
outfile
:
with
open
(
filename_err
,
"w"
)
as
errfile
:
ret
=
subprocess
.
call
(
"./"
+
_exec
[
"filename"
],
stdout
=
outfile
,
stderr
=
errfile
)
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