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runLM.py
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Created
Mon, Sep 9, 08:30
Size
2 KB
Mime Type
text/x-python
Expires
Wed, Sep 11, 08:30 (2 d)
Engine
blob
Format
Raw Data
Handle
20612516
Attached To
R3127 blackdynamite
runLM.py
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#!/usr/bin/env python
from
__future__
import
print_function
import
job
import
runconfig
import
job
import
conffile
import
run
import
sys
import
bdparser
class
RunLM
(
run
.
Run
):
"""
"""
def
attachToJob
(
self
,
job
):
if
(
not
"exec"
in
self
.
entries
):
self
.
createLaunchFile
()
if
(
"lm_conf"
in
self
.
entries
):
self
.
addConfigFiles
([
self
.
entries
[
"lm_conf"
]])
run
.
Run
.
attachToJob
(
self
,
job
)
def
addConfigFiles
(
self
,
file_list
,
regex_params
=
'LET\s+%p\s*=\s*%v'
):
run
.
Run
.
addConfigFiles
(
self
,
file_list
,
regex_params
=
regex_params
)
return
self
.
configfiles
def
createLaunchFile
(
self
):
self
.
execfile
=
conffile
.
addFile
(
"launch.sh"
,
self
.
base
,
content
=
"""
export HOST=__BLACKDYNAMITE__dbhost__
export SCHEMA=__BLACKDYNAMITE__study__
export RUN_ID=__BLACKDYNAMITE__run_id__
export DEBUG_LEVEL=0
mpirun __BLACKDYNAMITE__mpi_option__ -np __BLACKDYNAMITE__nproc__ __BLACKDYNAMITE__amel_path__ __BLACKDYNAMITE__lm_conf__ __BLACKDYNAMITE__nsteps__
if [ $? != 0 ]; then
updateRuns.py --study=$SCHEMA --host=$HOST --run_constraints="id = $RUN_ID" --updates="state = LM FAILED" --truerun
fi
"""
)
self
[
"exec"
]
=
self
.
execfile
.
id
return
self
.
execfile
def
__init__
(
self
,
base
):
run
.
Run
.
__init__
(
self
,
base
)
self
.
types
[
"amel_path"
]
=
str
self
.
types
[
"nsteps"
]
=
int
self
.
types
[
"lm_conf"
]
=
str
self
.
types
[
"mpi_option"
]
=
str
self
.
types
[
"lm_release_info"
]
=
str
self
.
allowNull
[
"lm_release_info"
]
=
True
################################################################
class
RunLMParser
(
bdparser
.
RunParser
):
"""
"""
def
parseBDParameters
(
self
):
params
=
bdparser
.
RunParser
.
parseBDParameters
(
self
)
return
params
def
__init__
(
self
):
bdparser
.
RunParser
.
__init__
(
self
)
self
.
mandatory
[
"nsteps"
]
=
True
self
.
mandatory
[
"amel_path"
]
=
True
self
.
mandatory
[
"lm_conf"
]
=
True
self
.
admissible_params
[
"nsteps"
]
=
int
self
.
help
[
"nsteps"
]
=
"Set the number of steps to run"
self
.
admissible_params
[
"amel_path"
]
=
str
self
.
help
[
"amel_path"
]
=
"The path to the libmultiscale client executable AMEL"
self
.
admissible_params
[
"lm_conf"
]
=
str
self
.
help
[
"lm_conf"
]
=
"The name of the configuration file for libmultiscale"
self
.
admissible_params
[
"mpi_option"
]
=
str
self
.
help
[
"mpi_option"
]
=
"optional MPI option"
self
.
default_params
[
"mpi_option"
]
=
" "
self
.
group_params
[
"RunLM"
]
=
[
"amel_path"
,
"nsteps"
,
"lm_conf"
,
"mpi_option"
,
"lm_release_info"
]
################################################################
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