Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F72572586
cleanRuns.py
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Mon, Jul 15, 21:32
Size
3 KB
Mime Type
text/x-python
Expires
Wed, Jul 17, 21:32 (2 d)
Engine
blob
Format
Raw Data
Handle
19072030
Attached To
R3127 blackdynamite
cleanRuns.py
View Options
#!/usr/bin/env python3
import
BlackDynamite
as
BD
import
os
import
sys
import
socket
import
re
import
shutil
################################################################
def
validate
(
question
):
if
params
[
"truerun"
]
is
True
:
validated
=
BD
.
bdparser
.
validate_question
(
question
,
params
)
else
:
print
(
"{0}? Forced N"
.
format
(
question
))
validated
=
False
return
validated
parser
=
BD
.
BDParser
()
parser
.
register_params
(
"clearRun"
,
params
=
{
"runid"
:
int
,
"clean_orphans"
:
str
,
"machine_name"
:
str
,
"constraints"
:
[
str
],
"delete"
:
bool
},
defaults
=
{
"machine_name"
:
socket
.
gethostname
(),
"delete"
:
False
,
})
params
=
parser
.
parseBDParameters
()
if
"machine_name"
in
params
:
if
"constraints"
in
params
:
params
[
"constraints"
]
.
append
(
"machine_name = "
+
params
[
"machine_name"
])
else
:
params
[
"constraints"
]
=
[
"machine_name = "
+
params
[
"machine_name"
]]
base
=
BD
.
Base
(
**
params
)
runSelector
=
BD
.
RunSelector
(
base
)
if
"clean_orphans"
in
params
:
run_list
=
runSelector
.
selectRuns
([])
run_ids
=
[
r
.
id
for
r
,
j
in
run_list
]
resdir
=
params
[
"clean_orphans"
]
+
"/BD-"
+
params
[
"study"
]
+
"-runs"
print
(
"clean orphans from "
+
resdir
)
if
not
os
.
path
.
exists
(
resdir
):
print
(
"Directory '"
+
resdir
+
"' do not exists"
)
sys
.
exit
(
-
1
)
to_delete
=
{}
for
filename
in
os
.
listdir
(
resdir
):
fullname
=
os
.
path
.
join
(
resdir
,
filename
)
# print(fullname)
if
(
os
.
path
.
isdir
(
fullname
)):
match
=
re
.
match
(
"run-([0-9]+)"
,
filename
)
if
(
match
):
# print(filename)
id
=
int
(
match
.
group
(
1
))
if
(
id
not
in
run_ids
):
to_delete
[
id
]
=
fullname
if
(
len
(
to_delete
.
keys
())
==
0
):
print
(
"No orphans found"
)
sys
.
exit
(
0
)
validated
=
validate
(
"Delete output from runs "
+
str
(
to_delete
.
keys
()))
if
(
validated
):
for
id
,
fullname
in
to_delete
.
items
():
print
(
"Delete output from run "
+
str
(
id
))
shutil
.
rmtree
(
fullname
)
sys
.
exit
(
0
)
runSelector
=
BD
.
RunSelector
(
base
)
run_list
=
runSelector
.
selectRuns
(
params
)
if
(
len
(
run_list
)
==
0
):
print
(
"No runs to be cleared"
)
validated
=
validate
(
"Delete runs "
+
str
([
r
[
0
]
.
id
for
r
in
run_list
]))
for
r
,
j
in
run_list
:
delete_flag
=
params
[
"delete"
]
run_path
=
r
[
"run_path"
]
if
run_path
:
if
os
.
path
.
exists
(
run_path
):
if
(
validated
):
print
(
"Deleting directory: "
+
run_path
)
shutil
.
rmtree
(
run_path
)
else
:
print
(
"Simulate deletion of directory: "
+
run_path
)
else
:
print
(
"output directory: '"
+
run_path
+
"' not found: are we on the right machine ?"
)
if
(
delete_flag
):
if
validated
:
print
(
"Deleting run "
+
str
(
r
.
id
)
+
" from base"
)
r
.
delete
()
base
.
commit
()
else
:
print
(
"Simulate deletion of run "
+
str
(
r
.
id
)
+
" from base"
)
else
:
if
validated
:
print
(
"Deleting data associated with run "
+
str
(
r
.
id
))
r
.
deleteData
()
r
[
"STATE"
]
=
"CREATED"
r
[
"start_time"
]
=
None
r
.
update
()
base
.
commit
()
else
:
print
(
"Simulate deletion of data associated with run "
+
str
(
r
.
id
))
Event Timeline
Log In to Comment