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studyInfo.py
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Created
Sun, Sep 29, 03:52
Size
2 KB
Mime Type
text/x-python
Expires
Tue, Oct 1, 03:52 (1 d, 23 h)
Engine
blob
Format
Raw Data
Handle
21179797
Attached To
R3127 blackdynamite
studyInfo.py
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#!/usr/bin/env python3
from
__future__
import
print_function
################################################################
import
BlackDynamite
as
BD
################################################################
def
printDataBaseInfo
(
base
,
params
):
curs
=
base
.
connection
.
cursor
()
curs
.
execute
(
"select current_database()"
)
datname
=
curs
.
fetchone
()[
0
]
curs
.
execute
(
"""
select d.datname,
pg_catalog.pg_size_pretty(pg_catalog.pg_database_size(d.datname))
from pg_catalog.pg_database d where (d.datname) = ('{0}')
"""
.
format
(
datname
))
datsize
=
curs
.
fetchone
()[
1
]
print
(
"Database:"
,
datname
,
datsize
)
def
printUserInfo
(
base
,
params
):
users
=
base
.
getUserList
()
print
(
'registered Users: {0}'
.
format
(
', '
.
join
(
users
)))
def
printStudyInfo
(
base
,
study
,
params
):
study_size
=
base
.
getStudySize
(
study
)
owner
=
base
.
getStudyOwner
(
study
)
granted_users
=
base
.
getGrantedUsers
(
study
)
print
(
'{0}'
.
format
(
study
))
print
(
' Owner:{:>30} '
.
format
(
owner
))
print
(
' #jobs:{:>30} '
.
format
(
study_size
[
'njobs'
]))
print
(
' #runs:{:>30} '
.
format
(
study_size
[
'nruns'
]))
print
(
' size: {:>30}'
.
format
(
study_size
[
'size'
]))
print
(
' grants: {0}'
.
format
(
','
.
join
(
granted_users
)))
def
fetchInfo
(
base
,
params
):
printUserInfo
(
base
,
params
)
if
"study"
not
in
params
:
study_list
=
base
.
getSchemaList
(
filter_names
=
False
)
else
:
study_list
=
[
base
.
schema
]
printDataBaseInfo
(
base
,
params
)
for
s
in
study_list
:
printStudyInfo
(
base
,
s
,
params
)
def
fetchStudy
(
base
,
params
):
runSelector
=
BD
.
RunSelector
(
base
)
run_list
=
runSelector
.
selectRuns
(
params
,
params
,
quiet
=
True
)
print
(
run_list
)
def
main
(
argv
=
None
):
if
(
type
(
argv
)
==
str
):
argv
=
argv
.
split
()
parser
=
BD
.
BDParser
()
parser
.
register_params
(
group
=
"studyInfo.py"
,
params
=
{
"full"
:
bool
,
"study"
:
str
,
"grant"
:
str
,
"revoke"
:
str
,
"fetch"
:
bool
},
help
=
{
"full"
:
"Say that you want details (can be costful)"
,
"study"
:
"specify a study to analyse"
,
"grant"
:
"specify an user to grant read permission"
,
"revoke"
:
"specify an user to revoke read permission"
,
"fetch"
:
"fetch the specified study as one of yours"
})
params
=
parser
.
parseBDParameters
(
argv
=
argv
)
params
[
"should_not_check_study"
]
=
True
mybase
=
BD
.
Base
(
**
params
)
if
'grant'
in
params
:
mybase
.
grantAccess
(
params
[
'study'
],
params
[
'grant'
])
if
'revoke'
in
params
:
mybase
.
revokeAccess
(
params
[
'study'
],
params
[
'revoke'
])
if
params
[
'fetch'
]
is
True
:
fetchStudy
(
mybase
,
params
)
fetchInfo
(
mybase
,
params
)
if
__name__
==
'__main__'
:
main
()
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