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cleanRuns.py
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Created
Tue, Oct 8, 12:10
Size
3 KB
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text/x-python
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Thu, Oct 10, 12:10 (2 d)
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blob
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Handle
21480178
Attached To
R3127 blackdynamite
cleanRuns.py
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#!/usr/bin/env python
import
BlackDynamite
as
BD
import
os
,
sys
,
stat
import
subprocess
import
socket
import
re
import
shutil
################################################################
def
validate
(
question
):
if
(
params
[
"truerun"
]
==
True
):
validated
=
BD
.
bdparser
.
validate_question
(
question
,
params
)
else
:
print
(
"{0}? Forced N"
.
format
(
question
))
validated
=
False
return
validated
parser
=
BD
.
BDParser
()
parser
.
register_params
(
"clearRun"
,
params
=
{
"runid"
:
int
,
"clean_orphans"
:
str
,
"machine_name"
:
str
,
"run_constraints"
:[
str
],
"job_constraints"
:[
str
],
"delete"
:
bool
,
},
defaults
=
{
"machine_name"
:
socket
.
gethostname
(),
"delete"
:
False
,
},
)
params
=
parser
.
parseBDParameters
()
run_constraints
=
[]
job_constraints
=
[]
if
(
"machine_name"
in
params
):
if
(
"run_constraints"
in
params
):
params
[
"run_constraints"
]
.
append
(
"machine_name = "
+
params
[
"machine_name"
])
else
:
params
[
"run_constraints"
]
=
[
"machine_name = "
+
params
[
"machine_name"
]]
base
=
BD
.
Base
(
**
params
)
runSelector
=
BD
.
RunSelector
(
base
)
if
(
"clean_orphans"
in
params
):
run_list
=
runSelector
.
selectRuns
([],[])
run_ids
=
[
r
.
id
for
r
,
j
in
run_list
]
resdir
=
params
[
"clean_orphans"
]
+
"/BD-"
+
params
[
"study"
]
+
"-runs"
print
(
"clean orphans from "
+
resdir
)
if
not
os
.
path
.
exists
(
resdir
):
print
(
"Directory '"
+
resdir
+
"' do not exists"
)
sys
.
exit
(
-
1
)
to_delete
=
{}
for
filename
in
os
.
listdir
(
resdir
):
fullname
=
os
.
path
.
join
(
resdir
,
filename
)
# print (fullname)
if
(
os
.
path
.
isdir
(
fullname
)):
match
=
re
.
match
(
"run-([0-9]+)"
,
filename
)
if
(
match
):
# print (filename)
id
=
int
(
match
.
group
(
1
))
if
(
id
not
in
run_ids
):
to_delete
[
id
]
=
fullname
if
(
len
(
to_delete
.
keys
())
==
0
):
print
(
"No orphans found"
)
sys
.
exit
(
0
)
validated
=
validate
(
"Delete output from runs "
+
str
(
to_delete
.
keys
()))
if
(
validated
):
for
id
,
fullname
in
to_delete
.
iteritems
():
print
(
"Delete output from run "
+
str
(
id
))
shutil
.
rmtree
(
fullname
)
sys
.
exit
(
0
)
runSelector
=
BD
.
RunSelector
(
base
)
run_list
=
runSelector
.
selectRuns
(
params
,
params
)
if
(
len
(
run_list
)
==
0
):
print
"No runs to be cleared"
validated
=
validate
(
"Delete runs "
+
str
([
r
[
0
]
.
id
for
r
in
run_list
]))
for
r
,
j
in
run_list
:
delete_flag
=
params
[
"delete"
]
run_path
=
r
[
"run_path"
]
if
run_path
:
if
os
.
path
.
exists
(
run_path
):
if
(
validated
):
print
(
"Deleting directory: "
+
run_path
)
shutil
.
rmtree
(
run_path
)
else
:
print
(
"Simulate deletion of directory: "
+
run_path
)
else
:
print
(
"output directory: '"
+
run_path
+
"' not found: are we on the right machine ?"
)
if
(
delete_flag
):
if
(
validated
):
print
(
"Deleting run "
+
str
(
r
.
id
)
+
" from base"
)
r
.
delete
()
base
.
commit
()
else
:
print
(
"Simulate deletion of run "
+
str
(
r
.
id
)
+
" from base"
)
else
:
if
(
validated
):
print
(
"Deleting data associated with run "
+
str
(
r
.
id
))
r
.
deleteData
()
r
[
"STATE"
]
=
"CREATED"
r
[
"start_time"
]
=
None
r
.
update
()
base
.
commit
()
else
:
print
(
"Simulate deletion of data associated with run "
+
str
(
r
.
id
))
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