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>pyblio-core 1.3.4</th>
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<a href="Pyblio-module.html">Package&nbsp;Pyblio</a> ::
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Module&nbsp;PubMed
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<h1 class="epydoc">Source Code for <a href="Pyblio.External.PubMed-module.html">Module Pyblio.External.PubMed</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># This file is part of pybliographer</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Copyright (C) 1998-2006 Frederic GOBRY</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Email : gobry@pybliographer.org</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This program is free software; you can redistribute it and/or</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># modify it under the terms of the GNU General Public License</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as published by the Free Software Foundation; either version 2 </tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># of the License, or (at your option) any later version.</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This program is distributed in the hope that it will be useful,</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># but WITHOUT ANY WARRANTY; without even the implied warranty of</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># GNU General Public License for more details. </tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># You should have received a copy of the GNU General Public License</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># along with this program; if not, write to the Free Software</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-docstring">Programmatic access to the PubMed database</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-comment"># Documentation taken from:</tt> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># http://eutils.ncbi.nlm.nih.gov/entrez/query/static/eutils_help.html</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment">#</tt> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">urllib</tt> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">datetime</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> </tt>
<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">gettext</tt> <tt class="py-keyword">import</tt> <tt class="py-name">gettext</tt> <tt class="py-name">as</tt> <tt class="py-name">_</tt> </tt>
<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Pyblio=Pyblio-module.html"><a title="Pyblio" class="py-name" href="#" onclick="return doclink('link-0', 'Pyblio', 'link-0');">Pyblio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Module Pyblio.Compat=Pyblio.Compat-module.html"><a title="Pyblio.Compat" class="py-name" href="#" onclick="return doclink('link-1', 'Compat', 'link-1');">Compat</a></tt> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">twisted</tt><tt class="py-op">.</tt><tt class="py-name">web</tt> <tt class="py-keyword">import</tt> <tt class="py-name">client</tt> </tt>
<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">twisted</tt><tt class="py-op">.</tt><tt class="py-name">internet</tt> <tt class="py-keyword">import</tt> <tt class="py-name">defer</tt><tt class="py-op">,</tt> <tt class="py-name">reactor</tt> </tt>
<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name"><a title="Pyblio" class="py-name" href="#" onclick="return doclink('link-2', 'Pyblio', 'link-0');">Pyblio</a></tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Module Pyblio.Exceptions=Pyblio.Exceptions-module.html"><a title="Pyblio.Exceptions" class="py-name" href="#" onclick="return doclink('link-3', 'Exceptions', 'link-3');">Exceptions</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Class Pyblio.Exceptions.QueryError=Pyblio.Exceptions.QueryError-class.html"><a title="Pyblio.Exceptions.QueryError" class="py-name" href="#" onclick="return doclink('link-4', 'QueryError', 'link-4');">QueryError</a></tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-5" class="py-name"><a title="Pyblio" class="py-name" href="#" onclick="return doclink('link-5', 'Pyblio', 'link-0');">Pyblio</a></tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Package Pyblio.External=Pyblio.External-module.html"><a title="Pyblio.External" class="py-name" href="#" onclick="return doclink('link-6', 'External', 'link-6');">External</a></tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Module Pyblio.External.HTTP=Pyblio.External.HTTP-module.html"><a title="Pyblio.External.HTTP" class="py-name" href="#" onclick="return doclink('link-7', 'HTTP', 'link-7');">HTTP</a></tt> <tt class="py-keyword">import</tt> <tt id="link-8" class="py-name" targets="Class Pyblio.External.HTTP.HTTPRetrieve=Pyblio.External.HTTP.HTTPRetrieve-class.html"><a title="Pyblio.External.HTTP.HTTPRetrieve" class="py-name" href="#" onclick="return doclink('link-8', 'HTTPRetrieve', 'link-8');">HTTPRetrieve</a></tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-9" class="py-name"><a title="Pyblio" class="py-name" href="#" onclick="return doclink('link-9', 'Pyblio', 'link-0');">Pyblio</a></tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Package Pyblio.Parsers=Pyblio.Parsers-module.html"><a title="Pyblio.Parsers" class="py-name" href="#" onclick="return doclink('link-10', 'Parsers', 'link-10');">Parsers</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Package Pyblio.Parsers.Semantic=Pyblio.Parsers.Semantic-module.html"><a title="Pyblio.Parsers.Semantic" class="py-name" href="#" onclick="return doclink('link-11', 'Semantic', 'link-11');">Semantic</a></tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Module Pyblio.External.PubMed=Pyblio.External.PubMed-module.html,Class Pyblio.External.PubMed.PubMed=Pyblio.External.PubMed.PubMed-class.html,Module Pyblio.Parsers.Semantic.PubMed=Pyblio.Parsers.Semantic.PubMed-module.html"><a title="Pyblio.External.PubMed
Pyblio.External.PubMed.PubMed
Pyblio.Parsers.Semantic.PubMed" class="py-name" href="#" onclick="return doclink('link-12', 'PubMed', 'link-12');">PubMed</a></tt> <tt class="py-keyword">import</tt> <tt id="link-13" class="py-name" targets="Class Pyblio.Parsers.Semantic.BibTeX.Reader=Pyblio.Parsers.Semantic.BibTeX.Reader-class.html,Class Pyblio.Parsers.Semantic.ISI.Reader=Pyblio.Parsers.Semantic.ISI.Reader-class.html,Class Pyblio.Parsers.Semantic.PubMed.Reader=Pyblio.Parsers.Semantic.PubMed.Reader-class.html,Class Pyblio.Parsers.Semantic.WOK.Reader=Pyblio.Parsers.Semantic.WOK.Reader-class.html,Class Pyblio.Parsers.Syntax.BibTeX.Reader=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html,Class Pyblio.Parsers.Syntax.ISI.Reader=Pyblio.Parsers.Syntax.ISI.Reader-class.html,Class Pyblio.Parsers.Syntax.RIS.Reader=Pyblio.Parsers.Syntax.RIS.Reader-class.html,Class Pyblio.Parsers.Syntax.Tagged.Reader=Pyblio.Parsers.Syntax.Tagged.Reader-class.html,Class Pyblio.Parsers.Syntax.XMLEndNote.Reader=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html,Class Pyblio.Parsers.Syntax.XMLMARC.Reader=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html"><a title="Pyblio.Parsers.Semantic.BibTeX.Reader
Pyblio.Parsers.Semantic.ISI.Reader
Pyblio.Parsers.Semantic.PubMed.Reader
Pyblio.Parsers.Semantic.WOK.Reader
Pyblio.Parsers.Syntax.BibTeX.Reader
Pyblio.Parsers.Syntax.ISI.Reader
Pyblio.Parsers.Syntax.RIS.Reader
Pyblio.Parsers.Syntax.Tagged.Reader
Pyblio.Parsers.Syntax.XMLEndNote.Reader
Pyblio.Parsers.Syntax.XMLMARC.Reader" class="py-name" href="#" onclick="return doclink('link-13', 'Reader', 'link-13');">Reader</a></tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> </tt>
<a name="_xml"></a><div id="_xml-def"><a name="L44"></a><tt class="py-lineno"> 44</tt> <a class="py-toggle" href="#" id="_xml-toggle" onclick="return toggle('_xml');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed-module.html#_xml">_xml</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="_xml-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_xml-expanded"><a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-docstring">""" Parse the result from the server, and immeditately catch</tt> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt class="py-docstring"> possible errors."""</tt> </tt>
<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-name">tree</tt> <tt class="py-op">=</tt> <tt id="link-14" class="py-name"><a title="Pyblio.Compat" class="py-name" href="#" onclick="return doclink('link-14', 'Compat', 'link-1');">Compat</a></tt><tt class="py-op">.</tt><tt class="py-name">ElementTree</tt><tt class="py-op">.</tt><tt class="py-name">XML</tt><tt class="py-op">(</tt><tt class="py-name">data</tt><tt class="py-op">)</tt> </tt>
<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">err</tt> <tt class="py-op">=</tt> <tt class="py-name">tree</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./ERROR'</tt><tt class="py-op">)</tt> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">err</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt id="link-15" class="py-name"><a title="Pyblio.Exceptions.QueryError" class="py-name" href="#" onclick="return doclink('link-15', 'QueryError', 'link-4');">QueryError</a></tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> </tt>
<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">tree</tt> </tt>
</div><a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> </tt>
<a name="QueryHelper"></a><div id="QueryHelper-def"><a name="L55"></a><tt class="py-lineno"> 55</tt> <a class="py-toggle" href="#" id="QueryHelper-toggle" onclick="return toggle('QueryHelper');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Pyblio.External.PubMed.QueryHelper-class.html">QueryHelper</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="QueryHelper-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="QueryHelper-expanded"><a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> </tt>
<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt id="link-16" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.query_fields=Pyblio.External.PubMed.QueryHelper-class.html#query_fields"><a title="Pyblio.External.PubMed.QueryHelper.query_fields" class="py-name" href="#" onclick="return doclink('link-16', 'query_fields', 'link-16');">query_fields</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-string">'ALL'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'All Fields'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-string">'AD'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Affiliation'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-string">'AU'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Author Name'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-string">'RN'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'EC/RN Number'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-string">'EDAT'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Entrez Date'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-string">'FILTER'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Filter'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-string">'IP'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Issue'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-string">'TA'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Journal Title'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-string">'LA'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Language'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-string">'MHDA'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'MeSH Date'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-string">'MAJR'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'MeSH Major Topic'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-string">'SH'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'MeSH Subheading'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-string">'MH'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'MeSH Terms'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-string">'PG'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Pagination'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-string">'DP'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Publication Date'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-string">'PT'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Publication Type'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-string">'SI'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Secondary Source ID'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-string">'NM'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Substance Name'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-string">'TW'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Text Word'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-string">'TI'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Title'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-string">'TIAB'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Title/Abstract'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-string">'PMID'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'UID'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-string">'VI'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Volume'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-17" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.publication_types=Pyblio.External.PubMed.QueryHelper-class.html#publication_types"><a title="Pyblio.External.PubMed.QueryHelper.publication_types" class="py-name" href="#" onclick="return doclink('link-17', 'publication_types', 'link-17');">publication_types</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-string">'addresses'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Addresses'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-string">'bibliography'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Bibliography'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-string">'biography'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Biography'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-string">'classical article'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Classical Article'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-string">'clinical conference'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Clinical Conference'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-string">'clinical trial'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Clinical Trial'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-string">'clinical trial, phase I'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Clinical Trial, Phase I'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-string">'clinical trial, phase II'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Clinical Trial, Phase II'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-string">'clinical trial, phase III'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Clinical Trial, Phase III'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-string">'clinical trial, phase IV'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Clinical Trial, Phase IV'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-string">'comment'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Comment'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-string">'congresses'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Congresses'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-string">'consensus development conference'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Consensus Development Conference'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-string">'consensus development conference, NIH'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Consensus Development Conference, NIH'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-string">'controlled clinical trial'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Controlled Clinical Trial'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-string">'corrected and republished article'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Corrected and Republished Article'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-string">'dictionary'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Dictionary'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-string">'directory'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Directory'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-string">'duplicate publication'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Duplicate Publication'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-string">'editorial'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Editorial'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-string">'evaluation studies'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Evaluation Studies'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-string">'festschrift'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Festschrift'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-string">'government publications'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Government Publications'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-string">'guideline'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Guideline'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-string">'historical article'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Historical Article'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-string">'interview'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Interview'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-string">'journal article'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Journal Article'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-string">'lectures'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Lectures'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-string">'legal cases'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Legal Cases'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-string">'legislation'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Legislation'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-string">'letter'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Letter'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-string">'meta-analysis'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Meta-Analysis'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-string">'multicenter study'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Multicenter Study'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-string">'news'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'News'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-string">'newspaper article'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Newspaper Article'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-string">'overall'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Overall'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-string">'periodical index'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Periodical Index'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-string">'practice guideline'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Practice Guideline'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-string">'randomized controlled trial'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Randomized Controlled Trial'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-string">'retraction of publication'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Retraction of Publication'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-string">'retracted publication'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Retracted Publication'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-string">'review'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Review'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-string">'review, academic'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Review, Academic'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-string">'review, literature'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Review Literature'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-string">'review, multicase'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Review, Multicase'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-string">'review of reported cases'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Review of Reported Cases'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-string">'review, tutorial'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Review, Tutorial'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-string">'scientific integrity review'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Scientific Integrity Review'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-string">'technical report'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Technical Report'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-string">'twin study'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Twin Study'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-string">'validation studies'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Validation Studies'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt id="link-18" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.language=Pyblio.External.PubMed.QueryHelper-class.html#language"><a title="Pyblio.External.PubMed.QueryHelper.language" class="py-name" href="#" onclick="return doclink('link-18', 'language', 'link-18');">language</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-string">'english'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'English'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-string">'french'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'French'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-string">'german'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'German'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-string">'italian'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Italian'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-string">'japanese'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Japanese'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-string">'russian'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Russian'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-string">'spanish'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Spanish'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt id="link-19" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.age_range=Pyblio.External.PubMed.QueryHelper-class.html#age_range"><a title="Pyblio.External.PubMed.QueryHelper.age_range" class="py-name" href="#" onclick="return doclink('link-19', 'age_range', 'link-19');">age_range</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'infant'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'All Infant (birth-23 month)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'child'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'All Child (0-18 years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'adult'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'All Adult (19+ years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'infant, newborn'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Newborn (birth-1 month)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'infant'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Infant (1-23 months)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'child, preschool'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Preschool Child (2-5 years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'child'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Child (6-12 years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'adolescence'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Adolescent (13-18 years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'adult'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Adult (19-44 years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'middle age'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Middle Aged (45-64 years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'aged'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Aged (65+ years)'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'aged, 80 and over'</tt><tt class="py-op">,</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'80 and over'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt id="link-20" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.human_animal=Pyblio.External.PubMed.QueryHelper-class.html#human_animal"><a title="Pyblio.External.PubMed.QueryHelper.human_animal" class="py-name" href="#" onclick="return doclink('link-20', 'human_animal', 'link-20');">human_animal</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-string">'human'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Human'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-string">'animal'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Animal'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> </tt>
<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt id="link-21" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.gender=Pyblio.External.PubMed.QueryHelper-class.html#gender"><a title="Pyblio.External.PubMed.QueryHelper.gender" class="py-name" href="#" onclick="return doclink('link-21', 'gender', 'link-21');">gender</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-string">'female'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Female'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-string">'male'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Male'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> </tt>
<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt id="link-22" class="py-name" targets="Variable Pyblio.External.PubMed.QueryHelper.subset=Pyblio.External.PubMed.QueryHelper-class.html#subset"><a title="Pyblio.External.PubMed.QueryHelper.subset" class="py-name" href="#" onclick="return doclink('link-22', 'subset', 'link-22');">subset</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-string">'bioethics[ab]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Bioethics'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-string">'jsubsetaim'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Core clinical journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#AIM - Abridged Index Medicus A list of core clinical journals created 20 years ago </tt> </tt>
<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-string">'jsubsetb'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Biotechnology journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#B - biotechnology journals (assigned 1990 - 1998), non-Index Medicus</tt> </tt>
<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-string">'jusbsetc'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Communication disorders journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#C - communication disorders journals (assigned 1977 - 1997), non-Index Medicus</tt> </tt>
<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-string">'jsubsetd'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Dental journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#D - dentistry journals </tt> </tt>
<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-string">'jsubsete'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Bioethics journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#E - bioethics journals, non-Index Medicus</tt> </tt>
<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-string">'jsubseth'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Health administration journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#H - health administration journals, non-Index Medicus </tt> </tt>
<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-string">'jsubsetim'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Index Medicus journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#IM - Index Medicus journals </tt> </tt>
<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-string">'jsubsetk'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Consumer health journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#K - consumer health journals, non-Index Medicus </tt> </tt>
<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-string">'jsubsetn'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Nursing journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#N - nursing journals </tt> </tt>
<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-string">'jsubsetq'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'History of Medicine journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#Q - history of medicine journals, non-Index Medicus </tt> </tt>
<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-string">'jsubsetr'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Reproduction journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#R - reproduction journals (assigned 1972 - 1979), non-Index Medicus</tt> </tt>
<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-string">'jsubsets'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'NASA journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#S - National Aeronautics and Space Administration (NASA) journals, non-Index Medicus </tt> </tt>
<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-string">'jsubsett'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Health tech assesment journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#T - health technology assessment journals, non-Index Medicus </tt> </tt>
<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-string">'jsubsetx'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'AIDS/HIV journals'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#X - AIDS/HIV journals, non-Index Medicus </tt> </tt>
<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> </tt>
<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-string">'aids[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'AIDS'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-string">'cam[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Complementary and Alternative Medicine'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-string">'history[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'History of Medicine'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-string">'in process[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'In process'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-string">'medline[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'MEDLINE'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-string">'medline pmc[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'PubMed Central'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-string">'space[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Space Life Sciences'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-string">'publisher[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Supplied by Publisher'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-string">'tox[sb]'</tt><tt class="py-op">:</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Toxicology'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> </tt>
<a name="QueryHelper.makeQuery"></a><div id="QueryHelper.makeQuery-def"><a name="L200"></a><tt class="py-lineno">200</tt> <a class="py-toggle" href="#" id="QueryHelper.makeQuery-toggle" onclick="return toggle('QueryHelper.makeQuery');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed.QueryHelper-class.html#makeQuery">makeQuery</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">field</tt><tt class="py-op">=</tt><tt class="py-string">'ALL'</tt><tt class="py-op">,</tt> <tt class="py-param">keyword</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">abstract</tt><tt class="py-op">=</tt><tt class="py-name">False</tt><tt class="py-op">,</tt> </tt>
<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-param">epubahead</tt><tt class="py-op">=</tt><tt class="py-name">False</tt><tt class="py-op">,</tt> <tt class="py-param">publication_type</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-param">language</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">subset</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">age_range</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-param">human_animal</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-param">gender</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-param">use_publication_date</tt><tt class="py-op">=</tt><tt class="py-name">False</tt><tt class="py-op">,</tt> <tt class="py-param">from_date</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-param">to_date</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="QueryHelper.makeQuery-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="QueryHelper.makeQuery-expanded"><a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> </tt>
<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-docstring">"""Compose an advanced query.</tt> </tt>
<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"><tt class="py-docstring"> 'field' is a single value from self.query_fields.</tt> </tt>
<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"><tt class="py-docstring"> 'publication_type' is a single value from self.publication_types, or None.</tt> </tt>
<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"><tt class="py-docstring"> 'language' is from self.language or None</tt> </tt>
<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"><tt class="py-docstring"> 'subset' is from self.subset or None</tt> </tt>
<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"><tt class="py-docstring"> 'age_range' is from self.age_range or None</tt> </tt>
<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"><tt class="py-docstring"> 'human_animal' is from self.human_animal or None</tt> </tt>
<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"><tt class="py-docstring"> 'gender' is from self.gender or None</tt> </tt>
<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"><tt class="py-docstring"> If use_publication_date is True, select publications whose</tt> </tt>
<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"><tt class="py-docstring"> publication date is between from_date and to_date, otherwise</tt> </tt>
<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"><tt class="py-docstring"> use the entrez date.</tt> </tt>
<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"><tt class="py-docstring"> Args:</tt> </tt>
<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"><tt class="py-docstring"> field: string</tt> </tt>
<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"><tt class="py-docstring"> keyword: string</tt> </tt>
<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"><tt class="py-docstring"> abstract: bool</tt> </tt>
<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"><tt class="py-docstring"> epubahead: bool</tt> </tt>
<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"><tt class="py-docstring"> publication_type: string or None</tt> </tt>
<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"><tt class="py-docstring"> language: string or None</tt> </tt>
<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"><tt class="py-docstring"> subset: string or None</tt> </tt>
<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"><tt class="py-docstring"> age_range: string or None</tt> </tt>
<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"><tt class="py-docstring"> human_animal: string or None</tt> </tt>
<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"><tt class="py-docstring"> gender: string or None</tt> </tt>
<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"><tt class="py-docstring"> pubdate: bool</tt> </tt>
<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"><tt class="py-docstring"> from_date: datetime.date() or None</tt> </tt>
<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"><tt class="py-docstring"> to_date: datetime.date() or None</tt> </tt>
<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> </tt>
<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-name">parts</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">keyword</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Method Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append()=Pyblio.Parsers.Syntax.BibTeX.Parser.Block-class.html#append"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-23', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">keyword</tt> <tt class="py-op">+</tt> <tt class="py-string">'[%s]'</tt> <tt class="py-op">%</tt> <tt class="py-name">field</tt><tt class="py-op">)</tt> </tt>
<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">abstract</tt><tt class="py-op">:</tt> </tt>
<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-24', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt class="py-string">'hasabstract'</tt><tt class="py-op">)</tt> </tt>
<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">epubahead</tt><tt class="py-op">:</tt> </tt>
<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-25', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt class="py-string">'pubstatusaheadofprint'</tt><tt class="py-op">)</tt> </tt>
<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">publication_type</tt><tt class="py-op">:</tt> </tt>
<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-26', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">pubtype</tt> <tt class="py-op">+</tt> <tt class="py-string">'[pt]'</tt><tt class="py-op">)</tt> </tt>
<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-27" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.language" class="py-name" href="#" onclick="return doclink('link-27', 'language', 'link-18');">language</a></tt><tt class="py-op">:</tt> </tt>
<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-28', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt id="link-29" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.language" class="py-name" href="#" onclick="return doclink('link-29', 'language', 'link-18');">language</a></tt> <tt class="py-op">+</tt> <tt class="py-string">'[la]'</tt><tt class="py-op">)</tt> </tt>
<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-30" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.subset" class="py-name" href="#" onclick="return doclink('link-30', 'subset', 'link-22');">subset</a></tt><tt class="py-op">:</tt> </tt>
<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-31', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt id="link-32" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.subset" class="py-name" href="#" onclick="return doclink('link-32', 'subset', 'link-22');">subset</a></tt><tt class="py-op">)</tt> </tt>
<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-33" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.age_range" class="py-name" href="#" onclick="return doclink('link-33', 'age_range', 'link-19');">age_range</a></tt><tt class="py-op">:</tt> </tt>
<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-34', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt id="link-35" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.age_range" class="py-name" href="#" onclick="return doclink('link-35', 'age_range', 'link-19');">age_range</a></tt> <tt class="py-op">+</tt> <tt class="py-string">'[mh]'</tt><tt class="py-op">)</tt> </tt>
<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-36" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.human_animal" class="py-name" href="#" onclick="return doclink('link-36', 'human_animal', 'link-20');">human_animal</a></tt><tt class="py-op">:</tt> </tt>
<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-37', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt id="link-38" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.human_animal" class="py-name" href="#" onclick="return doclink('link-38', 'human_animal', 'link-20');">human_animal</a></tt> <tt class="py-op">+</tt> <tt class="py-string">'[mh]'</tt><tt class="py-op">)</tt> </tt>
<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-39" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.gender" class="py-name" href="#" onclick="return doclink('link-39', 'gender', 'link-21');">gender</a></tt><tt class="py-op">:</tt> </tt>
<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-40', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt id="link-41" class="py-name"><a title="Pyblio.External.PubMed.QueryHelper.gender" class="py-name" href="#" onclick="return doclink('link-41', 'gender', 'link-21');">gender</a></tt> <tt class="py-op">+</tt> <tt class="py-string">'[mh]'</tt><tt class="py-op">)</tt> </tt>
<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> </tt>
<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">from_date</tt><tt class="py-op">:</tt> </tt>
<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">to_date</tt><tt class="py-op">:</tt> </tt>
<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-name">to_date</tt> <tt class="py-op">=</tt> <tt class="py-name">datetime</tt><tt class="py-op">.</tt><tt class="py-name">date</tt><tt class="py-op">.</tt><tt class="py-name">today</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">=</tt> <tt class="py-string">':'</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Function Pyblio.Format.DSL.join()=Pyblio.Format.DSL-module.html#join,Method Pyblio.Parsers.Syntax.BibTeX.Parser.Block.join()=Pyblio.Parsers.Syntax.BibTeX.Parser.Block-class.html#join,Method Pyblio.Parsers.Syntax.BibTeX.Parser.Join.join()=Pyblio.Parsers.Syntax.BibTeX.Parser.Join-class.html#join"><a title="Pyblio.Format.DSL.join
Pyblio.Parsers.Syntax.BibTeX.Parser.Block.join
Pyblio.Parsers.Syntax.BibTeX.Parser.Join.join" class="py-name" href="#" onclick="return doclink('link-42', 'join', 'link-42');">join</a></tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">from_date</tt><tt class="py-op">.</tt><tt class="py-name">strftime</tt><tt class="py-op">(</tt><tt class="py-string">'%Y/%m/%d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-name">to_date</tt><tt class="py-op">.</tt><tt class="py-name">strftime</tt><tt class="py-op">(</tt><tt class="py-string">'%Y/%m/%d'</tt><tt class="py-op">)</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> </tt>
<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">use_publication_date</tt><tt class="py-op">:</tt> </tt>
<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">+=</tt> <tt class="py-string">'[dp]'</tt> </tt>
<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">+=</tt> <tt class="py-string">'[edat]'</tt> </tt>
<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">parts</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Block.append" class="py-name" href="#" onclick="return doclink('link-43', 'append', 'link-23');">append</a></tt><tt class="py-op">(</tt><tt class="py-name">date</tt><tt class="py-op">)</tt> </tt>
<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> </tt>
<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">keywords</tt> <tt class="py-op">=</tt> <tt class="py-string">' AND '</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="Pyblio.Format.DSL.join
Pyblio.Parsers.Syntax.BibTeX.Parser.Block.join
Pyblio.Parsers.Syntax.BibTeX.Parser.Join.join" class="py-name" href="#" onclick="return doclink('link-44', 'join', 'link-42');">join</a></tt><tt class="py-op">(</tt><tt class="py-name">parts</tt><tt class="py-op">)</tt> </tt>
<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> </tt>
<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">keywords</tt> </tt>
</div></div><a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> </tt>
<a name="PubMed"></a><div id="PubMed-def"><a name="L273"></a><tt class="py-lineno">273</tt> <a class="py-toggle" href="#" id="PubMed-toggle" onclick="return toggle('PubMed');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Pyblio.External.PubMed.PubMed-class.html">PubMed</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="PubMed-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="PubMed-expanded"><a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-docstring">""" A connection to the PubMed database """</tt> </tt>
<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> </tt>
<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt id="link-45" class="py-name" targets="Variable Pyblio.External.Citeseer.Citeseer.schema=Pyblio.External.Citeseer.Citeseer-class.html#schema,Variable Pyblio.External.IExternal.schema=Pyblio.External.IExternal-class.html#schema,Variable Pyblio.External.PubMed.PubMed.schema=Pyblio.External.PubMed.PubMed-class.html#schema,Variable Pyblio.External.WOK.WOK.schema=Pyblio.External.WOK.WOK-class.html#schema,Variable Pyblio.Stores.bsddbstore.Database.schema=Pyblio.Stores.bsddbstore.Database-class.html#schema"><a title="Pyblio.External.Citeseer.Citeseer.schema
Pyblio.External.IExternal.schema
Pyblio.External.PubMed.PubMed.schema
Pyblio.External.WOK.WOK.schema
Pyblio.Stores.bsddbstore.Database.schema" class="py-name" href="#" onclick="return doclink('link-45', 'schema', 'link-45');">schema</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'org.pybliographer/pubmed/0.1'</tt> </tt>
<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> </tt>
<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt id="link-46" class="py-name" targets="Variable Pyblio.External.Citeseer.Citeseer.baseURL=Pyblio.External.Citeseer.Citeseer-class.html#baseURL,Variable Pyblio.External.CrossRef.DOIQuery.baseURL=Pyblio.External.CrossRef.DOIQuery-class.html#baseURL,Variable Pyblio.External.PubMed.PubMed.baseURL=Pyblio.External.PubMed.PubMed-class.html#baseURL,Variable Pyblio.External.WOK.WOK.baseURL=Pyblio.External.WOK.WOK-class.html#baseURL"><a title="Pyblio.External.Citeseer.Citeseer.baseURL
Pyblio.External.CrossRef.DOIQuery.baseURL
Pyblio.External.PubMed.PubMed.baseURL
Pyblio.External.WOK.WOK.baseURL" class="py-name" href="#" onclick="return doclink('link-46', 'baseURL', 'link-46');">baseURL</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'http://eutils.ncbi.nlm.nih.gov/entrez/eutils'</tt> </tt>
<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> </tt>
<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt id="link-47" class="py-name" targets="Variable Pyblio.External.Citeseer.Citeseer.BATCH_SIZE=Pyblio.External.Citeseer.Citeseer-class.html#BATCH_SIZE,Variable Pyblio.External.PubMed.PubMed.BATCH_SIZE=Pyblio.External.PubMed.PubMed-class.html#BATCH_SIZE"><a title="Pyblio.External.Citeseer.Citeseer.BATCH_SIZE
Pyblio.External.PubMed.PubMed.BATCH_SIZE" class="py-name" href="#" onclick="return doclink('link-47', 'BATCH_SIZE', 'link-47');">BATCH_SIZE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">500</tt> </tt>
<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> </tt>
<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt id="link-48" class="py-name" targets="Variable Pyblio.External.PubMed.PubMed.toolName=Pyblio.External.PubMed.PubMed-class.html#toolName"><a title="Pyblio.External.PubMed.PubMed.toolName" class="py-name" href="#" onclick="return doclink('link-48', 'toolName', 'link-48');">toolName</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'pybliographer'</tt> </tt>
<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt id="link-49" class="py-name" targets="Variable Pyblio.External.PubMed.PubMed.adminEmail=Pyblio.External.PubMed.PubMed-class.html#adminEmail"><a title="Pyblio.External.PubMed.PubMed.adminEmail" class="py-name" href="#" onclick="return doclink('link-49', 'adminEmail', 'link-49');">adminEmail</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'webmaster@pybliographer.org'</tt> </tt>
<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> </tt>
<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt id="link-50" class="py-name" targets="Variable Pyblio.Cite.Citator.log=Pyblio.Cite.Citator-module.html#log,Variable Pyblio.External.Citeseer.log=Pyblio.External.Citeseer-module.html#log,Variable Pyblio.External.CrossRef.DOIQuery.log=Pyblio.External.CrossRef.DOIQuery-class.html#log,Variable Pyblio.External.PubMed.PubMed.log=Pyblio.External.PubMed.PubMed-class.html#log,Variable Pyblio.External.WOK.WOK.log=Pyblio.External.WOK.WOK-class.html#log,Variable Pyblio.Parsers.Semantic.ISI.Reader.log=Pyblio.Parsers.Semantic.ISI.Reader-class.html#log,Variable Pyblio.Parsers.Semantic.PubMed.Reader.log=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#log,Variable Pyblio.Parsers.Semantic.WOK.Reader.log=Pyblio.Parsers.Semantic.WOK.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.BibTeX.Reader.log=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.BibTeX.Writer.log=Pyblio.Parsers.Syntax.BibTeX.Writer-class.html#log,Variable Pyblio.Parsers.Syntax.XMLEndNote.Reader.log=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.XMLEndNote.Writer.log=Pyblio.Parsers.Syntax.XMLEndNote.Writer-class.html#log,Variable Pyblio.Parsers.Syntax.XMLMARC.Reader.log=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.XMLMARC.Writer.log=Pyblio.Parsers.Syntax.XMLMARC.Writer-class.html#log,Variable Pyblio.Stores.bsddbstore.log=Pyblio.Stores.bsddbstore-module.html#log"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-50', 'log', 'link-50');">log</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">'pyblio.external.pubmed'</tt><tt class="py-op">)</tt> </tt>
<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> </tt>
<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt id="link-51" class="py-name" targets="Variable Pyblio.External.PubMed.PubMed.SRV_SEARCH=Pyblio.External.PubMed.PubMed-class.html#SRV_SEARCH"><a title="Pyblio.External.PubMed.PubMed.SRV_SEARCH" class="py-name" href="#" onclick="return doclink('link-51', 'SRV_SEARCH', 'link-51');">SRV_SEARCH</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'/esearch.fcgi'</tt> </tt>
<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt id="link-52" class="py-name" targets="Variable Pyblio.External.PubMed.PubMed.SRV_FETCH=Pyblio.External.PubMed.PubMed-class.html#SRV_FETCH"><a title="Pyblio.External.PubMed.PubMed.SRV_FETCH" class="py-name" href="#" onclick="return doclink('link-52', 'SRV_FETCH', 'link-52');">SRV_FETCH</a></tt> <tt class="py-op">=</tt> <tt class="py-string">'/efetch.fcgi'</tt> </tt>
<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> </tt>
<a name="PubMed.__init__"></a><div id="PubMed.__init__-def"><a name="L290"></a><tt class="py-lineno">290</tt> <a class="py-toggle" href="#" id="PubMed.__init__-toggle" onclick="return toggle('PubMed.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed.PubMed-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">db</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="PubMed.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="PubMed.__init__-expanded"><a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> </tt>
<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">db</tt> <tt class="py-op">=</tt> <tt class="py-name">db</tt> </tt>
<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">reader</tt> <tt class="py-op">=</tt> <tt id="link-53" class="py-name"><a title="Pyblio.Parsers.Semantic.BibTeX.Reader
Pyblio.Parsers.Semantic.ISI.Reader
Pyblio.Parsers.Semantic.PubMed.Reader
Pyblio.Parsers.Semantic.WOK.Reader
Pyblio.Parsers.Syntax.BibTeX.Reader
Pyblio.Parsers.Syntax.ISI.Reader
Pyblio.Parsers.Syntax.RIS.Reader
Pyblio.Parsers.Syntax.Tagged.Reader
Pyblio.Parsers.Syntax.XMLEndNote.Reader
Pyblio.Parsers.Syntax.XMLMARC.Reader" class="py-name" href="#" onclick="return doclink('link-53', 'Reader', 'link-13');">Reader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> </tt>
<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
</div><a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> </tt>
<a name="PubMed._query"></a><div id="PubMed._query-def"><a name="L298"></a><tt class="py-lineno">298</tt> <a class="py-toggle" href="#" id="PubMed._query-toggle" onclick="return toggle('PubMed._query');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed.PubMed-class.html#_query">_query</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">service</tt><tt class="py-op">,</tt> <tt class="py-param">args</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-param">kargs</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="PubMed._query-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="PubMed._query-expanded"><a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> </tt>
<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt id="link-54" class="py-name" targets="Class Pyblio.Format.DSL.all=Pyblio.Format.DSL.all-class.html"><a title="Pyblio.Format.DSL.all" class="py-name" href="#" onclick="return doclink('link-54', 'all', 'link-54');">all</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">'email'</tt><tt class="py-op">:</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="Pyblio.External.PubMed.PubMed.adminEmail" class="py-name" href="#" onclick="return doclink('link-55', 'adminEmail', 'link-49');">adminEmail</a></tt><tt class="py-op">,</tt> </tt>
<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-string">'tool'</tt><tt class="py-op">:</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="Pyblio.External.PubMed.PubMed.toolName" class="py-name" href="#" onclick="return doclink('link-56', 'toolName', 'link-48');">toolName</a></tt><tt class="py-op">,</tt> </tt>
<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> <tt class="py-string">'retmode'</tt><tt class="py-op">:</tt> <tt class="py-string">'xml'</tt><tt class="py-op">}</tt> </tt>
<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> </tt>
<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt id="link-57" class="py-name"><a title="Pyblio.Format.DSL.all" class="py-name" href="#" onclick="return doclink('link-57', 'all', 'link-54');">all</a></tt><tt class="py-op">.</tt><tt id="link-58" class="py-name" targets="Method Pyblio.Adapter.ResultSetStoreAdapter.update()=Pyblio.Adapter.ResultSetStoreAdapter-class.html#update,Method Pyblio.Cite.Citator.Citator.update()=Pyblio.Cite.Citator.Citator-class.html#update,Method Pyblio.Store.ResultSetStore.update()=Pyblio.Store.ResultSetStore-class.html#update,Method Pyblio.Stores.bsddbstore.ResultSetStore.update()=Pyblio.Stores.bsddbstore.ResultSetStore-class.html#update,Method Pyblio.Stores.filestore.ResultSetStore.update()=Pyblio.Stores.filestore.ResultSetStore-class.html#update"><a title="Pyblio.Adapter.ResultSetStoreAdapter.update
Pyblio.Cite.Citator.Citator.update
Pyblio.Store.ResultSetStore.update
Pyblio.Stores.bsddbstore.ResultSetStore.update
Pyblio.Stores.filestore.ResultSetStore.update" class="py-name" href="#" onclick="return doclink('link-58', 'update', 'link-58');">update</a></tt><tt class="py-op">(</tt><tt class="py-name">args</tt><tt class="py-op">)</tt> </tt>
<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt id="link-59" class="py-name"><a title="Pyblio.Format.DSL.all" class="py-name" href="#" onclick="return doclink('link-59', 'all', 'link-54');">all</a></tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="Pyblio.Adapter.ResultSetStoreAdapter.update
Pyblio.Cite.Citator.Citator.update
Pyblio.Store.ResultSetStore.update
Pyblio.Stores.bsddbstore.ResultSetStore.update
Pyblio.Stores.filestore.ResultSetStore.update" class="py-name" href="#" onclick="return doclink('link-60', 'update', 'link-58');">update</a></tt><tt class="py-op">(</tt><tt class="py-name">kargs</tt><tt class="py-op">)</tt> </tt>
<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> </tt>
<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-comment"># ensure all arguments are utf8 encoded</tt> </tt>
<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt class="py-name">k</tt><tt class="py-op">,</tt> <tt class="py-name">v</tt> <tt class="py-keyword">in</tt> <tt id="link-61" class="py-name"><a title="Pyblio.Format.DSL.all" class="py-name" href="#" onclick="return doclink('link-61', 'all', 'link-54');">all</a></tt><tt class="py-op">.</tt><tt class="py-name">items</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">v</tt><tt class="py-op">,</tt> <tt class="py-name">unicode</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="Pyblio.Format.DSL.all" class="py-name" href="#" onclick="return doclink('link-62', 'all', 'link-54');">all</a></tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">v</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name" targets="Function Pyblio.Parsers.Syntax.BibTeX.Coding.encode()=Pyblio.Parsers.Syntax.BibTeX.Coding-module.html#encode"><a title="Pyblio.Parsers.Syntax.BibTeX.Coding.encode" class="py-name" href="#" onclick="return doclink('link-63', 'encode', 'link-63');">encode</a></tt><tt class="py-op">(</tt><tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> </tt>
<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-name">url</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="Pyblio.External.Citeseer.Citeseer.baseURL
Pyblio.External.CrossRef.DOIQuery.baseURL
Pyblio.External.PubMed.PubMed.baseURL
Pyblio.External.WOK.WOK.baseURL" class="py-name" href="#" onclick="return doclink('link-64', 'baseURL', 'link-46');">baseURL</a></tt> <tt class="py-op">+</tt> <tt class="py-name">service</tt> <tt class="py-op">+</tt> <tt class="py-string">'?'</tt> <tt class="py-op">+</tt> <tt class="py-name">urllib</tt><tt class="py-op">.</tt><tt class="py-name">urlencode</tt><tt class="py-op">(</tt><tt id="link-65" class="py-name"><a title="Pyblio.Format.DSL.all" class="py-name" href="#" onclick="return doclink('link-65', 'all', 'link-54');">all</a></tt><tt class="py-op">)</tt> </tt>
<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> </tt>
<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-66', 'log', 'link-50');">log</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'sending query %r'</tt> <tt class="py-op">%</tt> <tt class="py-name">url</tt><tt class="py-op">)</tt> </tt>
<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> </tt>
<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-comment"># We have the charge of setting and cleaning self._pending</tt> </tt>
<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt> <tt class="py-op">=</tt> <tt id="link-67" class="py-name"><a title="Pyblio.External.HTTP.HTTPRetrieve" class="py-name" href="#" onclick="return doclink('link-67', 'HTTPRetrieve', 'link-8');">HTTPRetrieve</a></tt><tt class="py-op">(</tt><tt class="py-name">url</tt><tt class="py-op">)</tt> </tt>
<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> </tt>
<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">done</tt><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">data</tt> </tt>
</div><a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> </tt>
<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt><tt class="py-op">.</tt><tt class="py-name">deferred</tt><tt class="py-op">.</tt><tt class="py-name">addBoth</tt><tt class="py-op">(</tt><tt class="py-name">done</tt><tt class="py-op">)</tt> </tt>
</div><a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> </tt>
<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> </tt>
<a name="PubMed.count"></a><div id="PubMed.count-def"><a name="L326"></a><tt class="py-lineno">326</tt> <a class="py-toggle" href="#" id="PubMed.count-toggle" onclick="return toggle('PubMed.count');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed.PubMed-class.html#count">count</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">query</tt><tt class="py-op">,</tt> <tt class="py-param">db</tt><tt class="py-op">=</tt><tt class="py-string">'PubMed'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="PubMed.count-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="PubMed.count-expanded"><a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> </tt>
<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-string">'no more than one search at a time per connection'</tt> </tt>
<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> </tt>
<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"> <tt class="py-name">data</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">'db'</tt><tt class="py-op">:</tt> <tt class="py-name">db</tt><tt class="py-op">,</tt> </tt>
<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt class="py-string">'term'</tt><tt class="py-op">:</tt> <tt id="link-68" class="py-name" targets="Method Pyblio.Query.Queryable.query()=Pyblio.Query.Queryable-class.html#query,Method Pyblio.Store.Database.query()=Pyblio.Store.Database-class.html#query"><a title="Pyblio.Query.Queryable.query
Pyblio.Store.Database.query" class="py-name" href="#" onclick="return doclink('link-68', 'query', 'link-68');">query</a></tt><tt class="py-op">}</tt> </tt>
<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> </tt>
<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"> <tt class="py-name">req</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name" targets="Method Pyblio.External.Citeseer.Citeseer._query()=Pyblio.External.Citeseer.Citeseer-class.html#_query,Method Pyblio.External.PubMed.PubMed._query()=Pyblio.External.PubMed.PubMed-class.html#_query,Method Pyblio.External.WOK.WOK._query()=Pyblio.External.WOK.WOK-class.html#_query"><a title="Pyblio.External.Citeseer.Citeseer._query
Pyblio.External.PubMed.PubMed._query
Pyblio.External.WOK.WOK._query" class="py-name" href="#" onclick="return doclink('link-69', '_query', 'link-69');">_query</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="Pyblio.External.PubMed.PubMed.SRV_SEARCH" class="py-name" href="#" onclick="return doclink('link-70', 'SRV_SEARCH', 'link-51');">SRV_SEARCH</a></tt><tt class="py-op">,</tt> <tt class="py-name">data</tt><tt class="py-op">,</tt> <tt class="py-name">rettype</tt><tt class="py-op">=</tt><tt class="py-string">'count'</tt><tt class="py-op">)</tt> </tt>
<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> </tt>
<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">success</tt><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">data</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./Count'</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">)</tt> </tt>
</div><a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> </tt>
<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">req</tt><tt class="py-op">.</tt><tt class="py-name">addCallback</tt><tt class="py-op">(</tt><tt id="link-71" class="py-name" targets="Function Pyblio.External.PubMed._xml()=Pyblio.External.PubMed-module.html#_xml,Function Pyblio.External.WOK._xml()=Pyblio.External.WOK-module.html#_xml"><a title="Pyblio.External.PubMed._xml
Pyblio.External.WOK._xml" class="py-name" href="#" onclick="return doclink('link-71', '_xml', 'link-71');">_xml</a></tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">addCallback</tt><tt class="py-op">(</tt><tt class="py-name">success</tt><tt class="py-op">)</tt> </tt>
</div><a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> </tt>
<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> </tt>
<a name="PubMed.search"></a><div id="PubMed.search-def"><a name="L341"></a><tt class="py-lineno">341</tt> <a class="py-toggle" href="#" id="PubMed.search-toggle" onclick="return toggle('PubMed.search');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed.PubMed-class.html#search">search</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">query</tt><tt class="py-op">,</tt> <tt class="py-param">maxhits</tt><tt class="py-op">=</tt><tt class="py-number">500</tt><tt class="py-op">,</tt> <tt class="py-param">db</tt><tt class="py-op">=</tt><tt class="py-string">'PubMed'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="PubMed.search-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="PubMed.search-expanded"><a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> </tt>
<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-string">'no more than one search at a time per connection'</tt> </tt>
<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> </tt>
<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt id="link-72" class="py-name"><a title="Pyblio.Query.Queryable.query
Pyblio.Store.Database.query" class="py-name" href="#" onclick="return doclink('link-72', 'query', 'link-68');">query</a></tt> <tt class="py-op">=</tt> <tt id="link-73" class="py-name"><a title="Pyblio.Query.Queryable.query
Pyblio.Store.Database.query" class="py-name" href="#" onclick="return doclink('link-73', 'query', 'link-68');">query</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> </tt>
<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt class="py-name">data</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">'db'</tt><tt class="py-op">:</tt> <tt class="py-name">db</tt><tt class="py-op">,</tt> </tt>
<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt class="py-string">'term'</tt><tt class="py-op">:</tt> <tt id="link-74" class="py-name"><a title="Pyblio.Query.Queryable.query
Pyblio.Store.Database.query" class="py-name" href="#" onclick="return doclink('link-74', 'query', 'link-68');">query</a></tt><tt class="py-op">}</tt> </tt>
<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> </tt>
<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt class="py-name">req</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="Pyblio.External.Citeseer.Citeseer._query
Pyblio.External.PubMed.PubMed._query
Pyblio.External.WOK.WOK._query" class="py-name" href="#" onclick="return doclink('link-75', '_query', 'link-69');">_query</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="Pyblio.External.PubMed.PubMed.SRV_SEARCH" class="py-name" href="#" onclick="return doclink('link-76', 'SRV_SEARCH', 'link-51');">SRV_SEARCH</a></tt><tt class="py-op">,</tt> <tt class="py-name">data</tt><tt class="py-op">,</tt> <tt class="py-name">usehistory</tt><tt class="py-op">=</tt><tt class="py-string">'y'</tt><tt class="py-op">)</tt> </tt>
<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> </tt>
<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt class="py-comment"># The deferred for the global result</tt> </tt>
<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-77" class="py-name" targets="Variable Pyblio.External.Citeseer.ResultScraper.results=Pyblio.External.Citeseer.ResultScraper-class.html#results"><a title="Pyblio.External.Citeseer.ResultScraper.results" class="py-name" href="#" onclick="return doclink('link-77', 'results', 'link-77');">results</a></tt> <tt class="py-op">=</tt> <tt class="py-name">defer</tt><tt class="py-op">.</tt><tt class="py-name">Deferred</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> </tt>
<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt class="py-comment"># The result set that will contain the data</tt> </tt>
<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">rs</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">db</tt><tt class="py-op">.</tt><tt class="py-name">rs</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name" targets="Method Pyblio.Adapter.ResultSetStoreAdapter.new()=Pyblio.Adapter.ResultSetStoreAdapter-class.html#new,Method Pyblio.Store.ResultSetStore.new()=Pyblio.Store.ResultSetStore-class.html#new,Method Pyblio.Stores.bsddbstore.ResultSetStore.new()=Pyblio.Stores.bsddbstore.ResultSetStore-class.html#new,Method Pyblio.Stores.filestore.ResultSetStore.new()=Pyblio.Stores.filestore.ResultSetStore-class.html#new"><a title="Pyblio.Adapter.ResultSetStoreAdapter.new
Pyblio.Store.ResultSetStore.new
Pyblio.Stores.bsddbstore.ResultSetStore.new
Pyblio.Stores.filestore.ResultSetStore.new" class="py-name" href="#" onclick="return doclink('link-78', 'new', 'link-78');">new</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt class="py-name">rs</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name" targets="Variable Pyblio.Schema.Attribute.name=Pyblio.Schema.Attribute-class.html#name,Variable Pyblio.Schema.Schema.name=Pyblio.Schema.Schema-class.html#name,Variable Pyblio.Schema.TxoItem.name=Pyblio.Schema.TxoItem-class.html#name"><a title="Pyblio.Schema.Attribute.name
Pyblio.Schema.Schema.name
Pyblio.Schema.TxoItem.name" class="py-name" href="#" onclick="return doclink('link-79', 'name', 'link-79');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Imported from PubMed'</tt><tt class="py-op">)</tt> </tt>
<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"> </tt>
<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt class="py-comment"># Special case for no query: this would cause an error from</tt> </tt>
<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># the server if we do not catch it first.</tt> </tt>
<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-80" class="py-name"><a title="Pyblio.Query.Queryable.query
Pyblio.Store.Database.query" class="py-name" href="#" onclick="return doclink('link-80', 'query', 'link-68');">query</a></tt><tt class="py-op">:</tt> </tt>
<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">autofire</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt id="link-81" class="py-name"><a title="Pyblio.External.Citeseer.ResultScraper.results" class="py-name" href="#" onclick="return doclink('link-81', 'results', 'link-77');">results</a></tt><tt class="py-op">.</tt><tt class="py-name">callback</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
</div><a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-name">reactor</tt><tt class="py-op">.</tt><tt class="py-name">callLater</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">autofire</tt><tt class="py-op">)</tt> </tt>
<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-82" class="py-name"><a title="Pyblio.External.Citeseer.ResultScraper.results" class="py-name" href="#" onclick="return doclink('link-82', 'results', 'link-77');">results</a></tt><tt class="py-op">,</tt> <tt class="py-name">rs</tt> </tt>
<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> </tt>
<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> <tt class="py-name">stats</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> </tt>
<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">failed</tt><tt class="py-op">(</tt><tt class="py-param">reason</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt id="link-83" class="py-name"><a title="Pyblio.External.Citeseer.ResultScraper.results" class="py-name" href="#" onclick="return doclink('link-83', 'results', 'link-77');">results</a></tt><tt class="py-op">.</tt><tt class="py-name">errback</tt><tt class="py-op">(</tt><tt class="py-name">reason</tt><tt class="py-op">)</tt> </tt>
</div><a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> </tt>
<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">got_summary</tt><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt class="py-comment"># Total number of results</tt> </tt>
<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">all_results</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">data</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./Count'</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">)</tt> </tt>
<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> </tt>
<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-comment"># Parameters necessary to fetch the content of the result set</tt> </tt>
<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">fetchdata</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt class="py-string">'db'</tt><tt class="py-op">:</tt> <tt class="py-name">db</tt><tt class="py-op">,</tt> </tt>
<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt class="py-string">'WebEnv'</tt><tt class="py-op">:</tt> <tt class="py-name">data</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./WebEnv'</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">,</tt> </tt>
<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-string">'query_key'</tt><tt class="py-op">:</tt> <tt class="py-name">data</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./QueryKey'</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">,</tt> </tt>
<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> </tt>
<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt class="py-name">stats</tt><tt class="py-op">[</tt><tt class="py-string">'missing'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">min</tt><tt class="py-op">(</tt><tt class="py-name">all_results</tt><tt class="py-op">,</tt> <tt class="py-name">maxhits</tt><tt class="py-op">)</tt> </tt>
<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> </tt>
<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-84', 'log', 'link-50');">log</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'%d results, retrieving %d'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> </tt>
<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-name">all_results</tt><tt class="py-op">,</tt> <tt class="py-name">stats</tt><tt class="py-op">[</tt><tt class="py-string">'missing'</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> </tt>
<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">fetch</tt><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-comment"># data is None during the initial call to the method,</tt> </tt>
<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># so that we can reuse the same code.</tt> </tt>
<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">if</tt> <tt class="py-name">data</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt class="py-comment"># Process the incoming XML data</tt> </tt>
<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">previously</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">rs</tt><tt class="py-op">)</tt> </tt>
<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">reader</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name" targets="Method Pyblio.Parsers.Protocol.IReader.parse()=Pyblio.Parsers.Protocol.IReader-class.html#parse,Method Pyblio.Parsers.Semantic.PubMed.Reader.parse()=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#parse,Method Pyblio.Parsers.Semantic.WOK.Reader.parse()=Pyblio.Parsers.Semantic.WOK.Reader-class.html#parse,Method Pyblio.Parsers.Syntax.BibTeX.Reader.parse()=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html#parse,Method Pyblio.Parsers.Syntax.Tagged.Reader.parse()=Pyblio.Parsers.Syntax.Tagged.Reader-class.html#parse,Method Pyblio.Parsers.Syntax.XMLEndNote.Reader.parse()=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#parse,Method Pyblio.Parsers.Syntax.XMLMARC.Reader.parse()=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html#parse,Method Pyblio.Parsers.Syntax.XMLMARC.SimpleReader.parse()=Pyblio.Parsers.Syntax.XMLMARC.SimpleReader-class.html#parse"><a title="Pyblio.Parsers.Protocol.IReader.parse
Pyblio.Parsers.Semantic.PubMed.Reader.parse
Pyblio.Parsers.Semantic.WOK.Reader.parse
Pyblio.Parsers.Syntax.BibTeX.Reader.parse
Pyblio.Parsers.Syntax.Tagged.Reader.parse
Pyblio.Parsers.Syntax.XMLEndNote.Reader.parse
Pyblio.Parsers.Syntax.XMLMARC.Reader.parse
Pyblio.Parsers.Syntax.XMLMARC.SimpleReader.parse" class="py-name" href="#" onclick="return doclink('link-85', 'parse', 'link-85');">parse</a></tt><tt class="py-op">(</tt><tt class="py-name">data</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">db</tt><tt class="py-op">,</tt> <tt class="py-name">rs</tt><tt class="py-op">)</tt> </tt>
<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-name">freshly_parsed</tt> <tt class="py-op">=</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">rs</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-name">previously</tt> </tt>
<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">freshly_parsed</tt> <tt class="py-op">&lt;=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-86', 'log', 'link-50');">log</a></tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">"what happend? I increased the result set by %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">freshly_parsed</tt><tt class="py-op">)</tt> </tt>
<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-comment"># pretend there has been at least one parsing, so</tt> </tt>
<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># that we ensure that the task</tt> </tt>
<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># progresses. Otherwise we might loop forever on</tt> </tt>
<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># an entry we cannot parse.</tt> </tt>
<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">freshly_parsed</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> </tt>
<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> <tt class="py-name">stats</tt><tt class="py-op">[</tt><tt class="py-string">'missing'</tt><tt class="py-op">]</tt> <tt class="py-op">-=</tt> <tt class="py-name">freshly_parsed</tt> </tt>
<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"> </tt>
<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">stats</tt><tt class="py-op">[</tt><tt class="py-string">'missing'</tt><tt class="py-op">]</tt> <tt class="py-op">&lt;=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-87', 'log', 'link-50');">log</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'finished'</tt><tt class="py-op">)</tt> </tt>
<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> <tt id="link-88" class="py-name"><a title="Pyblio.External.Citeseer.ResultScraper.results" class="py-name" href="#" onclick="return doclink('link-88', 'results', 'link-77');">results</a></tt><tt class="py-op">.</tt><tt class="py-name">callback</tt><tt class="py-op">(</tt><tt class="py-name">all_results</tt><tt class="py-op">)</tt> </tt>
<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> </tt>
<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> <tt class="py-comment"># No need to fetch 500 results if only 20 are requested</tt> </tt>
<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">batch</tt> <tt class="py-op">=</tt> <tt class="py-name">min</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="Pyblio.External.Citeseer.Citeseer.BATCH_SIZE
Pyblio.External.PubMed.PubMed.BATCH_SIZE" class="py-name" href="#" onclick="return doclink('link-89', 'BATCH_SIZE', 'link-47');">BATCH_SIZE</a></tt><tt class="py-op">,</tt> <tt class="py-name">stats</tt><tt class="py-op">[</tt><tt class="py-string">'missing'</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-90', 'log', 'link-50');">log</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'retrieving next %d'</tt> <tt class="py-op">%</tt> <tt class="py-name">batch</tt><tt class="py-op">)</tt> </tt>
<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> </tt>
<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> <tt class="py-name">d</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="Pyblio.External.Citeseer.Citeseer._query
Pyblio.External.PubMed.PubMed._query
Pyblio.External.WOK.WOK._query" class="py-name" href="#" onclick="return doclink('link-91', '_query', 'link-69');">_query</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="Pyblio.External.PubMed.PubMed.SRV_FETCH" class="py-name" href="#" onclick="return doclink('link-92', 'SRV_FETCH', 'link-52');">SRV_FETCH</a></tt><tt class="py-op">,</tt> <tt class="py-name">fetchdata</tt><tt class="py-op">,</tt> </tt>
<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-name">retstart</tt><tt class="py-op">=</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">rs</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">retmax</tt><tt class="py-op">=</tt><tt class="py-name">batch</tt><tt class="py-op">)</tt> </tt>
<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> </tt>
<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt class="py-name">d</tt><tt class="py-op">.</tt><tt class="py-name">addCallback</tt><tt class="py-op">(</tt><tt id="link-93" class="py-name"><a title="Pyblio.External.PubMed._xml
Pyblio.External.WOK._xml" class="py-name" href="#" onclick="return doclink('link-93', '_xml', 'link-71');">_xml</a></tt><tt class="py-op">)</tt><tt class="py-op">.</tt>\ </tt>
<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt class="py-name">addCallback</tt><tt class="py-op">(</tt><tt id="link-94" class="py-name" targets="Method Pyblio.Cite.WP.File.File.fetch()=Pyblio.Cite.WP.File.File-class.html#fetch,Method Pyblio.Cite.WP.IWordProcessor.fetch()=Pyblio.Cite.WP.IWordProcessor-class.html#fetch,Method Pyblio.Cite.WP.LyX.LyX.fetch()=Pyblio.Cite.WP.LyX.LyX-class.html#fetch,Method Pyblio.Cite.WP.OpenOffice.OOo.fetch()=Pyblio.Cite.WP.OpenOffice.OOo-class.html#fetch"><a title="Pyblio.Cite.WP.File.File.fetch
Pyblio.Cite.WP.IWordProcessor.fetch
Pyblio.Cite.WP.LyX.LyX.fetch
Pyblio.Cite.WP.OpenOffice.OOo.fetch" class="py-name" href="#" onclick="return doclink('link-94', 'fetch', 'link-94');">fetch</a></tt><tt class="py-op">)</tt><tt class="py-op">.</tt>\ </tt>
<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt class="py-name">addErrback</tt><tt class="py-op">(</tt><tt id="link-95" class="py-name" targets="Variable twisted.web.client.HTTPPageGetter.failed=twisted.web.client.HTTPPageGetter-class.html#failed"><a title="twisted.web.client.HTTPPageGetter.failed" class="py-name" href="#" onclick="return doclink('link-95', 'failed', 'link-95');">failed</a></tt><tt class="py-op">)</tt> </tt>
<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
</div><a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> </tt>
<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt class="py-comment"># Bootstrap the fetching process</tt> </tt>
<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-96" class="py-name"><a title="Pyblio.Cite.WP.File.File.fetch
Pyblio.Cite.WP.IWordProcessor.fetch
Pyblio.Cite.WP.LyX.LyX.fetch
Pyblio.Cite.WP.OpenOffice.OOo.fetch" class="py-name" href="#" onclick="return doclink('link-96', 'fetch', 'link-94');">fetch</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
</div><a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> </tt>
<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"> <tt class="py-name">req</tt><tt class="py-op">.</tt><tt class="py-name">addCallback</tt><tt class="py-op">(</tt><tt id="link-97" class="py-name"><a title="Pyblio.External.PubMed._xml
Pyblio.External.WOK._xml" class="py-name" href="#" onclick="return doclink('link-97', '_xml', 'link-71');">_xml</a></tt><tt class="py-op">)</tt><tt class="py-op">.</tt>\ </tt>
<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt class="py-name">addCallback</tt><tt class="py-op">(</tt><tt class="py-name">got_summary</tt><tt class="py-op">)</tt><tt class="py-op">.</tt>\ </tt>
<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"> <tt class="py-name">addErrback</tt><tt class="py-op">(</tt><tt id="link-98" class="py-name"><a title="twisted.web.client.HTTPPageGetter.failed" class="py-name" href="#" onclick="return doclink('link-98', 'failed', 'link-95');">failed</a></tt><tt class="py-op">)</tt> </tt>
<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> </tt>
<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-99" class="py-name"><a title="Pyblio.External.Citeseer.ResultScraper.results" class="py-name" href="#" onclick="return doclink('link-99', 'results', 'link-77');">results</a></tt><tt class="py-op">,</tt> <tt class="py-name">rs</tt> </tt>
</div><a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> </tt>
<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> </tt>
<a name="PubMed.cancel"></a><div id="PubMed.cancel-def"><a name="L433"></a><tt class="py-lineno">433</tt> <a class="py-toggle" href="#" id="PubMed.cancel-toggle" onclick="return toggle('PubMed.cancel');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.External.PubMed.PubMed-class.html#cancel">cancel</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="PubMed.cancel-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="PubMed.cancel-expanded"><a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> <tt class="py-docstring">""" Cancel a running query. The database is not reverted to its</tt> </tt>
<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"><tt class="py-docstring"> original state."""</tt> </tt>
<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt><tt class="py-op">:</tt> </tt>
<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"> </tt>
<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_pending</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name" targets="Method Pyblio.External.Citeseer.Citeseer.cancel()=Pyblio.External.Citeseer.Citeseer-class.html#cancel,Method Pyblio.External.HTTP.HTTPRetrieve.cancel()=Pyblio.External.HTTP.HTTPRetrieve-class.html#cancel,Method Pyblio.External.IExternal.cancel()=Pyblio.External.IExternal-class.html#cancel,Method Pyblio.External.PubMed.PubMed.cancel()=Pyblio.External.PubMed.PubMed-class.html#cancel,Method Pyblio.External.WOK.WOK.cancel()=Pyblio.External.WOK.WOK-class.html#cancel"><a title="Pyblio.External.Citeseer.Citeseer.cancel
Pyblio.External.HTTP.HTTPRetrieve.cancel
Pyblio.External.IExternal.cancel
Pyblio.External.PubMed.PubMed.cancel
Pyblio.External.WOK.WOK.cancel" class="py-name" href="#" onclick="return doclink('link-100', 'cancel', 'link-100');">cancel</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
</div></div><a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> </tt><script type="text/javascript">
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