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<a href="Pyblio-module.html">Package&nbsp;Pyblio</a> ::
<a href="Pyblio.External-module.html">Package&nbsp;External</a> ::
<a href="Pyblio.External.PubMed-module.html">Module&nbsp;PubMed</a> ::
Class&nbsp;PubMed
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<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1 class="epydoc">Class PubMed</h1><span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed">source&nbsp;code</a></span><br /><br />
<pre class="base-tree">
object --+
|
<strong class="uidshort">PubMed</strong>
</pre>
<hr />
A connection to the PubMed database<br /><br />
<!-- ==================== INSTANCE METHODS ==================== -->
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<span class="summary-type">&nbsp;</span>
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<td><span class="summary-sig"><a href="Pyblio.External.PubMed.PubMed-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">db</span>)</span><br />
x.__init__(...) initializes x; see x.__class__.__doc__ for
signature</td>
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<span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed.__init__">source&nbsp;code</a></span>
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<span class="summary-type">&nbsp;</span>
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<tr>
<td><span class="summary-sig"><a name="_query"></a><span class="summary-sig-name">_query</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">service</span>,
<span class="summary-sig-arg">args</span>,
<span class="summary-sig-arg">**kargs</span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed._query">source&nbsp;code</a></span>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<table width="100%" cellpadding="0" cellspacing="0" border="0">
<tr>
<td><span class="summary-sig"><a name="count"></a><span class="summary-sig-name">count</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">query</span>,
<span class="summary-sig-arg">db</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">PubMed</code><code class="variable-quote">'</code></span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed.count">source&nbsp;code</a></span>
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<span class="summary-type">&nbsp;</span>
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<td><span class="summary-sig"><a name="search"></a><span class="summary-sig-name">search</span>(<span class="summary-sig-arg">self</span>,
<span class="summary-sig-arg">query</span>,
<span class="summary-sig-arg">maxhits</span>=<span class="summary-sig-default">500</span>,
<span class="summary-sig-arg">db</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">PubMed</code><code class="variable-quote">'</code></span>)</span></td>
<td align="right" valign="top">
<span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed.search">source&nbsp;code</a></span>
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<span class="summary-type">&nbsp;</span>
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<td><span class="summary-sig"><a href="Pyblio.External.PubMed.PubMed-class.html#cancel" class="summary-sig-name">cancel</a>(<span class="summary-sig-arg">self</span>)</span><br />
Cancel a running query.</td>
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<td colspan="2" class="summary">
<p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
<code>__delattr__</code>,
<code>__getattribute__</code>,
<code>__hash__</code>,
<code>__new__</code>,
<code>__reduce__</code>,
<code>__reduce_ex__</code>,
<code>__repr__</code>,
<code>__setattr__</code>,
<code>__str__</code>
</p>
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<!-- ==================== CLASS VARIABLES ==================== -->
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<td align="left"><span class="table-header">Class Variables</span></td>
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<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="schema"></a><span class="summary-name">schema</span> = <code title="'org.pybliographer/pubmed/0.1'"><code class="variable-quote">'</code><code class="variable-string">org.pybliographer/pubmed/0.1</code><code class="variable-quote">'</code></code>
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<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="baseURL"></a><span class="summary-name">baseURL</span> = <code title="'http://eutils.ncbi.nlm.nih.gov/entrez/eutils'"><code class="variable-quote">'</code><code class="variable-string">http://eutils.ncbi.nlm.nih.gov/entrez/eutils</code><code class="variable-quote">'</code></code>
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<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="BATCH_SIZE"></a><span class="summary-name">BATCH_SIZE</span> = <code title="500">500</code>
</td>
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<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="toolName"></a><span class="summary-name">toolName</span> = <code title="'pybliographer'"><code class="variable-quote">'</code><code class="variable-string">pybliographer</code><code class="variable-quote">'</code></code>
</td>
</tr>
<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="adminEmail"></a><span class="summary-name">adminEmail</span> = <code title="'webmaster@pybliographer.org'"><code class="variable-quote">'</code><code class="variable-string">webmaster@pybliographer.org</code><code class="variable-quote">'</code></code>
</td>
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<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="log"></a><span class="summary-name">log</span> = <code title="logging.getLogger('pyblio.external.pubmed')">logging.getLogger('pyblio.external.pubmed')</code>
</td>
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<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="SRV_SEARCH"></a><span class="summary-name">SRV_SEARCH</span> = <code title="'/esearch.fcgi'"><code class="variable-quote">'</code><code class="variable-string">/esearch.fcgi</code><code class="variable-quote">'</code></code>
</td>
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<tr>
<td width="15%" align="right" valign="top" class="summary">
<span class="summary-type">&nbsp;</span>
</td><td class="summary">
<a name="SRV_FETCH"></a><span class="summary-name">SRV_FETCH</span> = <code title="'/efetch.fcgi'"><code class="variable-quote">'</code><code class="variable-string">/efetch.fcgi</code><code class="variable-quote">'</code></code>
</td>
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<!-- ==================== PROPERTIES ==================== -->
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<td align="left"><span class="table-header">Properties</span></td>
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<p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
<code>__class__</code>
</p>
</td>
</tr>
</table>
<!-- ==================== METHOD DETAILS ==================== -->
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class="privatelink" onclick="toggle_private();"
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<a name="__init__"></a>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
<span class="sig-arg">db</span>)</span>
<br /><em class="fname">(Constructor)</em>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed.__init__">source&nbsp;code</a></span>&nbsp;
</td>
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x.__init__(...) initializes x; see x.__class__.__doc__ for
signature
<dl class="fields">
<dt>Overrides:
object.__init__
<dd><em class="note">(inherited documentation)</em></dd>
</dt>
</dl>
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<h3 class="epydoc"><span class="sig"><span class="sig-name">cancel</span>(<span class="sig-arg">self</span>)</span>
</h3>
</td><td align="right" valign="top"
><span class="codelink"><a href="Pyblio.External.PubMed-pysrc.html#PubMed.cancel">source&nbsp;code</a></span>&nbsp;
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Cancel a running query. The database is not reverted to its original
state.
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