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<a href="Pyblio-module.html">Package&nbsp;Pyblio</a> ::
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<a href="Pyblio.Parsers.Semantic-module.html">Package&nbsp;Semantic</a> ::
Module&nbsp;PubMed
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<h1 class="epydoc">Source Code for <a href="Pyblio.Parsers.Semantic.PubMed-module.html">Module Pyblio.Parsers.Semantic.PubMed</a></h1>
<pre class="py-src">
<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment"># This file is part of pybliographer</tt> </tt>
<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Copyright (C) 1998-2006 Frederic GOBRY</tt> </tt>
<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Email : gobry@pybliographer.org</tt> </tt>
<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This program is free software; you can redistribute it and/or</tt> </tt>
<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># modify it under the terms of the GNU General Public License</tt> </tt>
<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># as published by the Free Software Foundation; either version 2 </tt> </tt>
<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># of the License, or (at your option) any later version.</tt> </tt>
<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># This program is distributed in the hope that it will be useful,</tt> </tt>
<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># but WITHOUT ANY WARRANTY; without even the implied warranty of</tt> </tt>
<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</tt> </tt>
<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># GNU General Public License for more details. </tt> </tt>
<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># You should have received a copy of the GNU General Public License</tt> </tt>
<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># along with this program; if not, write to the Free Software</tt> </tt>
<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.</tt> </tt>
<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-comment"># </tt> </tt>
<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-comment"></tt><tt class="py-docstring">"""</tt> </tt>
<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-docstring">Parser for the XML format returned by PubMed's Web API</tt> </tt>
<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> </tt>
<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt> </tt>
<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> </tt>
<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">gettext</tt> <tt class="py-keyword">import</tt> <tt class="py-name">gettext</tt> <tt class="py-name">as</tt> <tt class="py-name">_</tt> </tt>
<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> </tt>
<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package Pyblio=Pyblio-module.html"><a title="Pyblio" class="py-name" href="#" onclick="return doclink('link-0', 'Pyblio', 'link-0');">Pyblio</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Module Pyblio.Attribute=Pyblio.Attribute-module.html,Class Pyblio.Schema.Attribute=Pyblio.Schema.Attribute-class.html"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-1', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">,</tt> <tt id="link-2" class="py-name" targets="Module Pyblio.Store=Pyblio.Store-module.html"><a title="Pyblio.Store" class="py-name" href="#" onclick="return doclink('link-2', 'Store', 'link-2');">Store</a></tt><tt class="py-op">,</tt> <tt id="link-3" class="py-name" targets="Module Pyblio.Compat=Pyblio.Compat-module.html"><a title="Pyblio.Compat" class="py-name" href="#" onclick="return doclink('link-3', 'Compat', 'link-3');">Compat</a></tt> </tt>
<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> </tt>
<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable Pyblio.Parsers.Semantic.PubMed._DEBUG=Pyblio.Parsers.Semantic.PubMed-module.html#_DEBUG"><a title="Pyblio.Parsers.Semantic.PubMed._DEBUG" class="py-name" href="#" onclick="return doclink('link-4', '_DEBUG', 'link-4');">_DEBUG</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> </tt>
<a name="Reader"></a><div id="Reader-def"><a name="L32"></a><tt class="py-lineno"> 32</tt> <a class="py-toggle" href="#" id="Reader-toggle" onclick="return toggle('Reader');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html">Reader</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Reader-expanded"><a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-docstring">""" Parse records as returned by PubMed's web service."""</tt> </tt>
<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> </tt>
<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt id="link-5" class="py-name" targets="Variable Pyblio.Cite.Citator.log=Pyblio.Cite.Citator-module.html#log,Variable Pyblio.External.Citeseer.log=Pyblio.External.Citeseer-module.html#log,Variable Pyblio.External.CrossRef.DOIQuery.log=Pyblio.External.CrossRef.DOIQuery-class.html#log,Variable Pyblio.External.PubMed.PubMed.log=Pyblio.External.PubMed.PubMed-class.html#log,Variable Pyblio.External.WOK.WOK.log=Pyblio.External.WOK.WOK-class.html#log,Variable Pyblio.Parsers.Semantic.ISI.Reader.log=Pyblio.Parsers.Semantic.ISI.Reader-class.html#log,Variable Pyblio.Parsers.Semantic.PubMed.Reader.log=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#log,Variable Pyblio.Parsers.Semantic.WOK.Reader.log=Pyblio.Parsers.Semantic.WOK.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.BibTeX.Reader.log=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.BibTeX.Writer.log=Pyblio.Parsers.Syntax.BibTeX.Writer-class.html#log,Variable Pyblio.Parsers.Syntax.XMLEndNote.Reader.log=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.XMLEndNote.Writer.log=Pyblio.Parsers.Syntax.XMLEndNote.Writer-class.html#log,Variable Pyblio.Parsers.Syntax.XMLMARC.Reader.log=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html#log,Variable Pyblio.Parsers.Syntax.XMLMARC.Writer.log=Pyblio.Parsers.Syntax.XMLMARC.Writer-class.html#log,Variable Pyblio.Stores.bsddbstore.log=Pyblio.Stores.bsddbstore-module.html#log"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-5', 'log', 'link-5');">log</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">'pyblio.import.pubmed'</tt><tt class="py-op">)</tt> </tt>
<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> </tt>
<a name="Reader.uid"></a><div id="Reader.uid-def"><a name="L37"></a><tt class="py-lineno"> 37</tt> <a class="py-toggle" href="#" id="Reader.uid-toggle" onclick="return toggle('Reader.uid');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#uid">uid</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.uid-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.uid-expanded"><a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-docstring">""" Generate the display name of a record.</tt> </tt>
<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt class="py-docstring"> Used when outputting a warning for instance."""</tt> </tt>
<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">'PMID:'</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">[</tt><tt class="py-string">'pmid'</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt class="py-name">key</tt><tt class="py-op">)</tt> </tt>
</div><a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-comment"># Supported fields</tt> </tt>
<a name="Reader.do_default"></a><div id="Reader.do_default-def"><a name="L47"></a><tt class="py-lineno"> 47</tt> <a class="py-toggle" href="#" id="Reader.do_default-toggle" onclick="return toggle('Reader.do_default');">-</a><tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_default">do_default</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_default-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_default-expanded"><a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-docstring">""" Called when no specific handler exist."""</tt> </tt>
<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> </tt>
<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name"><a title="Pyblio.Cite.Citator.log
Pyblio.External.Citeseer.log
Pyblio.External.CrossRef.DOIQuery.log
Pyblio.External.PubMed.PubMed.log
Pyblio.External.WOK.WOK.log
Pyblio.Parsers.Semantic.ISI.Reader.log
Pyblio.Parsers.Semantic.PubMed.Reader.log
Pyblio.Parsers.Semantic.WOK.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Reader.log
Pyblio.Parsers.Syntax.BibTeX.Writer.log
Pyblio.Parsers.Syntax.XMLEndNote.Reader.log
Pyblio.Parsers.Syntax.XMLEndNote.Writer.log
Pyblio.Parsers.Syntax.XMLMARC.Reader.log
Pyblio.Parsers.Syntax.XMLMARC.Writer.log
Pyblio.Stores.bsddbstore.log" class="py-name" href="#" onclick="return doclink('link-6', 'log', 'link-5');">log</a></tt><tt class="py-op">.</tt><tt class="py-name">warn</tt><tt class="py-op">(</tt><tt class="py-string">'%s: unhandled attribute %s'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> </tt>
<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method Pyblio.Parsers.Semantic.PubMed.Reader.uid()=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#uid,Method Pyblio.Parsers.Semantic.WOK.Reader.uid()=Pyblio.Parsers.Semantic.WOK.Reader-class.html#uid"><a title="Pyblio.Parsers.Semantic.PubMed.Reader.uid
Pyblio.Parsers.Semantic.WOK.Reader.uid" class="py-name" href="#" onclick="return doclink('link-7', 'uid', 'link-7');">uid</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">repr</tt><tt class="py-op">(</tt><tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
</div><a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> </tt>
<a name="Reader.do_MedlineJournalInfo"></a><div id="Reader.do_MedlineJournalInfo-def"><a name="L54"></a><tt class="py-lineno"> 54</tt> <a class="py-toggle" href="#" id="Reader.do_MedlineJournalInfo-toggle" onclick="return toggle('Reader.do_MedlineJournalInfo');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_MedlineJournalInfo">do_MedlineJournalInfo</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_MedlineJournalInfo-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_MedlineJournalInfo-expanded"><a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-comment"># this can contain the journal title, but as a fallback</tt> </tt>
<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_fallback_journal</tt> <tt class="py-op">=</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">findtext</tt><tt class="py-op">(</tt><tt class="py-string">'./MedlineTA'</tt><tt class="py-op">)</tt> </tt>
</div><a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> </tt>
<a name="Reader.do_Article"></a><div id="Reader.do_Article-def"><a name="L58"></a><tt class="py-lineno"> 58</tt> <a class="py-toggle" href="#" id="Reader.do_Article-toggle" onclick="return toggle('Reader.do_Article');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_Article">do_Article</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_Article-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_Article-expanded"><a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">child</tt> <tt class="py-keyword">in</tt> <tt class="py-name">node</tt><tt class="py-op">:</tt> </tt>
<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">fn</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-string">'do_Article_'</tt> <tt class="py-op">+</tt> <tt class="py-name">child</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt><tt class="py-op">,</tt> </tt>
<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Method Pyblio.External.Citeseer.RelaxedBibTeX.do_default()=Pyblio.External.Citeseer.RelaxedBibTeX-class.html#do_default,Method Pyblio.Parsers.Semantic.ISI.Reader.do_default()=Pyblio.Parsers.Semantic.ISI.Reader-class.html#do_default,Method Pyblio.Parsers.Semantic.PubMed.Reader.do_default()=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_default,Method Pyblio.Parsers.Semantic.WOK.Reader.do_default()=Pyblio.Parsers.Semantic.WOK.Reader-class.html#do_default,Method Pyblio.Parsers.Syntax.BibTeX.Reader.do_default()=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html#do_default,Method Pyblio.Parsers.Syntax.ISI.Reader.do_default()=Pyblio.Parsers.Syntax.ISI.Reader-class.html#do_default,Method Pyblio.Parsers.Syntax.RIS.Reader.do_default()=Pyblio.Parsers.Syntax.RIS.Reader-class.html#do_default,Method Pyblio.Parsers.Syntax.XMLEndNote.Reader.do_default()=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#do_default,Method Pyblio.Parsers.Syntax.XMLMARC.Reader.do_default()=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html#do_default,Method Pyblio.Parsers.Syntax.XMLMARC.SimpleReader.do_default()=Pyblio.Parsers.Syntax.XMLMARC.SimpleReader-class.html#do_default"><a title="Pyblio.External.Citeseer.RelaxedBibTeX.do_default
Pyblio.Parsers.Semantic.ISI.Reader.do_default
Pyblio.Parsers.Semantic.PubMed.Reader.do_default
Pyblio.Parsers.Semantic.WOK.Reader.do_default
Pyblio.Parsers.Syntax.BibTeX.Reader.do_default
Pyblio.Parsers.Syntax.ISI.Reader.do_default
Pyblio.Parsers.Syntax.RIS.Reader.do_default
Pyblio.Parsers.Syntax.XMLEndNote.Reader.do_default
Pyblio.Parsers.Syntax.XMLMARC.Reader.do_default
Pyblio.Parsers.Syntax.XMLMARC.SimpleReader.do_default" class="py-name" href="#" onclick="return doclink('link-8', 'do_default', 'link-8');">do_default</a></tt><tt class="py-op">)</tt> </tt>
<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-name">fn</tt><tt class="py-op">(</tt><tt class="py-name">child</tt><tt class="py-op">)</tt> </tt>
<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
</div><a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> </tt>
<a name="Reader.do_Article_ArticleTitle"></a><div id="Reader.do_Article_ArticleTitle-def"><a name="L65"></a><tt class="py-lineno"> 65</tt> <a class="py-toggle" href="#" id="Reader.do_Article_ArticleTitle-toggle" onclick="return toggle('Reader.do_Article_ArticleTitle');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_Article_ArticleTitle">do_Article_ArticleTitle</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_Article_ArticleTitle-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_Article_ArticleTitle-expanded"><a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method Pyblio.Adapter.OneToOneAdapter.add()=Pyblio.Adapter.OneToOneAdapter-class.html#add,Method Pyblio.Adapter.ResultSetAdapter.add()=Pyblio.Adapter.ResultSetAdapter-class.html#add,Method Pyblio.Arrays.KeyArray.add()=Pyblio.Arrays.KeyArray-class.html#add,Method Pyblio.Parsers.Syntax.XMLEndNote.Reader.add()=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#add,Method Pyblio.Parsers.Syntax.XMLMARC.Writer.add()=Pyblio.Parsers.Syntax.XMLMARC.Writer-class.html#add,Method Pyblio.Store.Database.add()=Pyblio.Store.Database-class.html#add,Method Pyblio.Store.Record.add()=Pyblio.Store.Record-class.html#add,Method Pyblio.Store.ResultSet.add()=Pyblio.Store.ResultSet-class.html#add,Method Pyblio.Store.ResultSetStore.add()=Pyblio.Store.ResultSetStore-class.html#add,Method Pyblio.Stores.bsddbstore.Database.add()=Pyblio.Stores.bsddbstore.Database-class.html#add,Method Pyblio.Stores.filestore.Database.add()=Pyblio.Stores.filestore.Database-class.html#add,Method Pyblio.Stores.resultset.ResultSet.add()=Pyblio.Stores.resultset.ResultSet-class.html#add"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-9', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-string">'title'</tt><tt class="py-op">,</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">,</tt> <tt id="link-10" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-10', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Class Pyblio.Attribute.Text=Pyblio.Attribute.Text-class.html,Class Pyblio.Format.S2.Text=Pyblio.Format.S2.Text-class.html,Module Pyblio.Format.Text=Pyblio.Format.Text-module.html,Class Pyblio.Parsers.Syntax.BibTeX.Parser.Text=Pyblio.Parsers.Syntax.BibTeX.Parser.Text-class.html"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-11', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> </tt>
<a name="Reader.do_Article_Abstract"></a><div id="Reader.do_Article_Abstract-def"><a name="L68"></a><tt class="py-lineno"> 68</tt> <a class="py-toggle" href="#" id="Reader.do_Article_Abstract-toggle" onclick="return toggle('Reader.do_Article_Abstract');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_Article_Abstract">do_Article_Abstract</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_Article_Abstract-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_Article_Abstract-expanded"><a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-name">abstract</tt> <tt class="py-op">=</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./AbstractText'</tt><tt class="py-op">)</tt> </tt>
<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-12', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-string">'abstract'</tt><tt class="py-op">,</tt> <tt class="py-name">abstract</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">,</tt> <tt id="link-13" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-13', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-14', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> </tt>
<a name="Reader.do_Article_Journal"></a><div id="Reader.do_Article_Journal-def"><a name="L72"></a><tt class="py-lineno"> 72</tt> <a class="py-toggle" href="#" id="Reader.do_Article_Journal-toggle" onclick="return toggle('Reader.do_Article_Journal');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_Article_Journal">do_Article_Journal</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_Article_Journal-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_Article_Journal-expanded"><a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">maybe</tt><tt class="py-op">(</tt><tt class="py-param">dst</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">,</tt> <tt class="py-param">conv</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">v</tt> <tt class="py-op">=</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-name">key</tt><tt class="py-op">)</tt> </tt>
<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">v</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-15', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-name">dst</tt><tt class="py-op">,</tt> <tt class="py-name">v</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">,</tt> <tt class="py-name">conv</tt><tt class="py-op">)</tt> </tt>
</div><a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> </tt>
<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-comment"># optionally, the title can come from the MedlineTA field</tt> </tt>
<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt id="link-16" class="py-name" targets="Function Pyblio.Format.Person.maybe()=Pyblio.Format.Person-module.html#maybe"><a title="Pyblio.Format.Person.maybe" class="py-name" href="#" onclick="return doclink('link-16', 'maybe', 'link-16');">maybe</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal'</tt><tt class="py-op">,</tt> <tt class="py-string">'Title'</tt><tt class="py-op">,</tt> <tt id="link-17" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-17', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-18', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt id="link-19" class="py-name"><a title="Pyblio.Format.Person.maybe" class="py-name" href="#" onclick="return doclink('link-19', 'maybe', 'link-16');">maybe</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal.issn'</tt><tt class="py-op">,</tt> <tt class="py-string">'ISSN'</tt><tt class="py-op">,</tt> <tt id="link-20" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-20', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Class Pyblio.Attribute.ID=Pyblio.Attribute.ID-class.html"><a title="Pyblio.Attribute.ID" class="py-name" href="#" onclick="return doclink('link-21', 'ID', 'link-21');">ID</a></tt><tt class="py-op">)</tt> </tt>
<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> </tt>
<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt id="link-22" class="py-name"><a title="Pyblio.Format.Person.maybe" class="py-name" href="#" onclick="return doclink('link-22', 'maybe', 'link-16');">maybe</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal.volume'</tt><tt class="py-op">,</tt> <tt class="py-string">'JournalIssue/Volume'</tt><tt class="py-op">,</tt> <tt id="link-23" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-23', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-24', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt id="link-25" class="py-name"><a title="Pyblio.Format.Person.maybe" class="py-name" href="#" onclick="return doclink('link-25', 'maybe', 'link-16');">maybe</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal.issue'</tt><tt class="py-op">,</tt> <tt class="py-string">'JournalIssue/Issue'</tt><tt class="py-op">,</tt> <tt id="link-26" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-26', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-27', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> </tt>
<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt id="link-28" class="py-name"><a title="Pyblio.Format.Person.maybe" class="py-name" href="#" onclick="return doclink('link-28', 'maybe', 'link-16');">maybe</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal.year'</tt><tt class="py-op">,</tt> <tt class="py-string">'JournalIssue/PubDate/Year'</tt><tt class="py-op">,</tt> <tt id="link-29" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-29', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-30', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt id="link-31" class="py-name"><a title="Pyblio.Format.Person.maybe" class="py-name" href="#" onclick="return doclink('link-31', 'maybe', 'link-16');">maybe</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal.month'</tt><tt class="py-op">,</tt> <tt class="py-string">'JournalIssue/PubDate/Month'</tt><tt class="py-op">,</tt> <tt id="link-32" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-32', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-33', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> </tt>
<a name="Reader.do_Article_AuthorList"></a><div id="Reader.do_Article_AuthorList-def"><a name="L88"></a><tt class="py-lineno"> 88</tt> <a class="py-toggle" href="#" id="Reader.do_Article_AuthorList-toggle" onclick="return toggle('Reader.do_Article_AuthorList');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_Article_AuthorList">do_Article_AuthorList</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_Article_AuthorList-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_Article_AuthorList-expanded"><a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">v</tt><tt class="py-op">(</tt><tt class="py-param">n</tt><tt class="py-op">,</tt> <tt class="py-param">k</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">n</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-name">k</tt><tt class="py-op">)</tt> </tt>
<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">l</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">l</tt><tt class="py-op">.</tt><tt class="py-name">text</tt> </tt>
<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
</div><a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> </tt>
<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-comment"># believe it if you want, but some records specify a</tt> </tt>
<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># "ForeName", and others a "FirstName"...</tt> </tt>
<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-keyword">for</tt> <tt class="py-name">au</tt> <tt class="py-keyword">in</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">findall</tt><tt class="py-op">(</tt><tt class="py-string">'./Author'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-name">person</tt> <tt class="py-op">=</tt> <tt id="link-34" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-34', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-35" class="py-name" targets="Class Pyblio.Attribute.Person=Pyblio.Attribute.Person-class.html,Module Pyblio.Format.Person=Pyblio.Format.Person-module.html"><a title="Pyblio.Attribute.Person
Pyblio.Format.Person" class="py-name" href="#" onclick="return doclink('link-35', 'Person', 'link-35');">Person</a></tt><tt class="py-op">(</tt> </tt>
<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">last</tt><tt class="py-op">=</tt><tt class="py-name">v</tt><tt class="py-op">(</tt><tt class="py-name">au</tt><tt class="py-op">,</tt> <tt class="py-string">'./LastName'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">first</tt><tt class="py-op">=</tt><tt class="py-name">v</tt><tt class="py-op">(</tt><tt class="py-name">au</tt><tt class="py-op">,</tt> <tt class="py-string">'./ForeName'</tt><tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-name">v</tt><tt class="py-op">(</tt><tt class="py-name">au</tt><tt class="py-op">,</tt> <tt class="py-string">'./FirstName'</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-36', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-string">'author'</tt><tt class="py-op">,</tt> <tt class="py-name">person</tt><tt class="py-op">)</tt> </tt>
</div><a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> </tt>
<a name="Reader.do_Article_Pagination"></a><div id="Reader.do_Article_Pagination-def"><a name="L103"></a><tt class="py-lineno">103</tt> <a class="py-toggle" href="#" id="Reader.do_Article_Pagination-toggle" onclick="return toggle('Reader.do_Article_Pagination');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_Article_Pagination">do_Article_Pagination</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_Article_Pagination-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_Article_Pagination-expanded"><a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">v</tt> <tt class="py-op">=</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'./MedlinePgn'</tt><tt class="py-op">)</tt> </tt>
<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">v</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt> <tt class="py-keyword">and</tt> <tt class="py-name">v</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">:</tt> </tt>
<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-comment"># pubmed will return abbreviated page ranges (1234-45</tt> </tt>
<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># meaning 1234-1245). We transform them into full ranges,</tt> </tt>
<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># as this is only some kind of space saving convention.</tt> </tt>
<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">pages</tt> <tt class="py-op">=</tt> <tt class="py-name">v</tt><tt class="py-op">.</tt><tt class="py-name">text</tt> </tt>
<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">textual_pair</tt> <tt class="py-op">=</tt> <tt class="py-name">pages</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">'-'</tt><tt class="py-op">)</tt> </tt>
<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">pair</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-37" class="py-name" targets="Variable Pyblio.Parsers.Syntax.XMLEndNote.Writer.x=Pyblio.Parsers.Syntax.XMLEndNote.Writer-class.html#x"><a title="Pyblio.Parsers.Syntax.XMLEndNote.Writer.x" class="py-name" href="#" onclick="return doclink('link-37', 'x', 'link-37');">x</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">for</tt> <tt id="link-38" class="py-name"><a title="Pyblio.Parsers.Syntax.XMLEndNote.Writer.x" class="py-name" href="#" onclick="return doclink('link-38', 'x', 'link-37');">x</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">textual_pair</tt><tt class="py-op">]</tt> </tt>
<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">pair</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">pair</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt> <tt class="py-keyword">and</tt> <tt class="py-name">pair</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">&lt;</tt> <tt class="py-name">pair</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-comment"># we could play with logs to find out the actual cut</tt> </tt>
<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># point, but using the textual representation is</tt> </tt>
<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># probably more natural</tt> </tt>
<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">left</tt><tt class="py-op">,</tt> <tt class="py-name">right</tt> <tt class="py-op">=</tt> <tt class="py-name">textual_pair</tt> </tt>
<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">full_right</tt> <tt class="py-op">=</tt> <tt class="py-name">left</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">left</tt><tt class="py-op">)</tt><tt class="py-op">-</tt><tt class="py-name">len</tt><tt class="py-op">(</tt><tt class="py-name">right</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">right</tt> </tt>
<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">full_right</tt><tt class="py-op">)</tt> <tt class="py-op">&gt;</tt> <tt class="py-name">pair</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">pages</tt> <tt class="py-op">=</tt> <tt class="py-string">'%s-%s'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">left</tt><tt class="py-op">,</tt> <tt class="py-name">full_right</tt><tt class="py-op">)</tt> </tt>
<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-39', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal.pages'</tt><tt class="py-op">,</tt> <tt class="py-name">pages</tt><tt class="py-op">,</tt> <tt id="link-40" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-40', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-41', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> </tt>
<a name="Reader.do_PMID"></a><div id="Reader.do_PMID-def"><a name="L125"></a><tt class="py-lineno">125</tt> <a class="py-toggle" href="#" id="Reader.do_PMID-toggle" onclick="return toggle('Reader.do_PMID');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#do_PMID">do_PMID</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">node</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.do_PMID-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.do_PMID-expanded"><a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-42', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-string">'pmid'</tt><tt class="py-op">,</tt> <tt class="py-name">node</tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">,</tt> <tt id="link-43" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-43', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="Pyblio.Attribute.ID" class="py-name" href="#" onclick="return doclink('link-44', 'ID', 'link-21');">ID</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> </tt>
<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-comment"># Parsing logic and hooks</tt> </tt>
<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-comment"></tt> </tt>
<a name="Reader.record_begin"></a><div id="Reader.record_begin-def"><a name="L130"></a><tt class="py-lineno">130</tt> <a class="py-toggle" href="#" id="Reader.record_begin-toggle" onclick="return toggle('Reader.record_begin');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#record_begin">record_begin</a> <tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.record_begin-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.record_begin-expanded"><a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
</div><a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> </tt>
<a name="Reader.record_end"></a><div id="Reader.record_end-def"><a name="L133"></a><tt class="py-lineno">133</tt> <a class="py-toggle" href="#" id="Reader.record_end-toggle" onclick="return toggle('Reader.record_end');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#record_end">record_end</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.record_end-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.record_end-expanded"><a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-comment"># in some cases, the journal title wasn't in the Journal node,</tt> </tt>
<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-comment"># but can be recovered from the MedlineTA field.</tt> </tt>
<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-comment"></tt> <tt class="py-name">j</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Function Pyblio.Registry.get()=Pyblio.Registry-module.html#get,Method Pyblio.Store.Record.get()=Pyblio.Store.Record-class.html#get,Function Pyblio.Store.get()=Pyblio.Store-module.html#get"><a title="Pyblio.Registry.get
Pyblio.Store.Record.get
Pyblio.Store.get" class="py-name" href="#" onclick="return doclink('link-45', 'get', 'link-45');">get</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal'</tt><tt class="py-op">)</tt> </tt>
<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">j</tt> <tt class="py-keyword">and</tt> <tt class="py-keyword">not</tt> <tt class="py-name">j</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name" targets="Method Pyblio.Attribute.UnknownContent.is_complete()=Pyblio.Attribute.UnknownContent-class.html#is_complete,Method Pyblio.Attribute._Qualified.is_complete()=Pyblio.Attribute._Qualified-class.html#is_complete"><a title="Pyblio.Attribute.UnknownContent.is_complete
Pyblio.Attribute._Qualified.is_complete" class="py-name" href="#" onclick="return doclink('link-46', 'is_complete', 'link-46');">is_complete</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_fallback_journal</tt><tt class="py-op">:</tt> </tt>
<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-47', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-string">'journal'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_fallback_journal</tt><tt class="py-op">,</tt> <tt id="link-48" class="py-name"><a title="Pyblio.Attribute
Pyblio.Schema.Attribute" class="py-name" href="#" onclick="return doclink('link-48', 'Attribute', 'link-1');">Attribute</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="Pyblio.Attribute.Text
Pyblio.Format.S2.Text
Pyblio.Format.Text
Pyblio.Parsers.Syntax.BibTeX.Parser.Text" class="py-name" href="#" onclick="return doclink('link-49', 'Text', 'link-11');">Text</a></tt><tt class="py-op">)</tt> </tt>
</div><a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> </tt>
<a name="Reader.parse"></a><div id="Reader.parse-def"><a name="L140"></a><tt class="py-lineno">140</tt> <a class="py-toggle" href="#" id="Reader.parse-toggle" onclick="return toggle('Reader.parse');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="Pyblio.Parsers.Semantic.PubMed.Reader-class.html#parse">parse</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fd</tt><tt class="py-op">,</tt> <tt class="py-param">db</tt><tt class="py-op">,</tt> <tt class="py-param">rs</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
</div><div id="Reader.parse-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Reader.parse-expanded"><a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> </tt>
<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rs</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-name">rs</tt> <tt class="py-op">=</tt> <tt class="py-name">db</tt><tt class="py-op">.</tt><tt class="py-name">rs</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Method Pyblio.Adapter.ResultSetStoreAdapter.new()=Pyblio.Adapter.ResultSetStoreAdapter-class.html#new,Method Pyblio.Store.ResultSetStore.new()=Pyblio.Store.ResultSetStore-class.html#new,Method Pyblio.Stores.bsddbstore.ResultSetStore.new()=Pyblio.Stores.bsddbstore.ResultSetStore-class.html#new,Method Pyblio.Stores.filestore.ResultSetStore.new()=Pyblio.Stores.filestore.ResultSetStore-class.html#new"><a title="Pyblio.Adapter.ResultSetStoreAdapter.new
Pyblio.Store.ResultSetStore.new
Pyblio.Stores.bsddbstore.ResultSetStore.new
Pyblio.Stores.filestore.ResultSetStore.new" class="py-name" href="#" onclick="return doclink('link-50', 'new', 'link-50');">new</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">rs</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name" targets="Variable Pyblio.Schema.Attribute.name=Pyblio.Schema.Attribute-class.html#name,Variable Pyblio.Schema.Schema.name=Pyblio.Schema.Schema-class.html#name,Variable Pyblio.Schema.TxoItem.name=Pyblio.Schema.TxoItem-class.html#name"><a title="Pyblio.Schema.Attribute.name
Pyblio.Schema.Schema.name
Pyblio.Schema.TxoItem.name" class="py-name" href="#" onclick="return doclink('link-51', 'name', 'link-51');">name</a></tt> <tt class="py-op">=</tt> <tt class="py-name">_</tt><tt class="py-op">(</tt><tt class="py-string">'Imported from PubMed'</tt><tt class="py-op">)</tt> </tt>
<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> </tt>
<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">db</tt> <tt class="py-op">=</tt> <tt class="py-name">db</tt> </tt>
<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> </tt>
<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">item</tt> <tt class="py-keyword">in</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">findall</tt><tt class="py-op">(</tt><tt class="py-string">'./PubmedArticle/MedlineCitation'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt> <tt class="py-op">=</tt> <tt id="link-52" class="py-name"><a title="Pyblio.Store" class="py-name" href="#" onclick="return doclink('link-52', 'Store', 'link-2');">Store</a></tt><tt class="py-op">.</tt><tt id="link-53" class="py-name" targets="Class Pyblio.Parsers.Syntax.BibTeX.Parser.Record=Pyblio.Parsers.Syntax.BibTeX.Parser.Record-class.html,Class Pyblio.Store.Record=Pyblio.Store.Record-class.html"><a title="Pyblio.Parsers.Syntax.BibTeX.Parser.Record
Pyblio.Store.Record" class="py-name" href="#" onclick="return doclink('link-53', 'Record', 'link-53');">Record</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name" targets="Method Pyblio.Parsers.Semantic.BibTeX.Reader.record_begin()=Pyblio.Parsers.Semantic.BibTeX.Reader-class.html#record_begin,Method Pyblio.Parsers.Semantic.ISI.Reader.record_begin()=Pyblio.Parsers.Semantic.ISI.Reader-class.html#record_begin,Method Pyblio.Parsers.Semantic.PubMed.Reader.record_begin()=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#record_begin,Method Pyblio.Parsers.Semantic.WOK.Reader.record_begin()=Pyblio.Parsers.Semantic.WOK.Reader-class.html#record_begin,Method Pyblio.Parsers.Syntax.BibTeX.Reader.record_begin()=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html#record_begin,Method Pyblio.Parsers.Syntax.BibTeX.Writer.record_begin()=Pyblio.Parsers.Syntax.BibTeX.Writer-class.html#record_begin,Method Pyblio.Parsers.Syntax.Tagged.Reader.record_begin()=Pyblio.Parsers.Syntax.Tagged.Reader-class.html#record_begin,Method Pyblio.Parsers.Syntax.XMLEndNote.Reader.record_begin()=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#record_begin,Method Pyblio.Parsers.Syntax.XMLMARC.Reader.record_begin()=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html#record_begin"><a title="Pyblio.Parsers.Semantic.BibTeX.Reader.record_begin
Pyblio.Parsers.Semantic.ISI.Reader.record_begin
Pyblio.Parsers.Semantic.PubMed.Reader.record_begin
Pyblio.Parsers.Semantic.WOK.Reader.record_begin
Pyblio.Parsers.Syntax.BibTeX.Reader.record_begin
Pyblio.Parsers.Syntax.BibTeX.Writer.record_begin
Pyblio.Parsers.Syntax.Tagged.Reader.record_begin
Pyblio.Parsers.Syntax.XMLEndNote.Reader.record_begin
Pyblio.Parsers.Syntax.XMLMARC.Reader.record_begin" class="py-name" href="#" onclick="return doclink('link-54', 'record_begin', 'link-54');">record_begin</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> </tt>
<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-55" class="py-name"><a title="Pyblio.Parsers.Semantic.PubMed._DEBUG" class="py-name" href="#" onclick="return doclink('link-55', '_DEBUG', 'link-4');">_DEBUG</a></tt><tt class="py-op">:</tt> </tt>
<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt id="link-56" class="py-name"><a title="Pyblio.Compat" class="py-name" href="#" onclick="return doclink('link-56', 'Compat', 'link-3');">Compat</a></tt><tt class="py-op">.</tt><tt class="py-name">ElementTree</tt><tt class="py-op">.</tt><tt class="py-name">dump</tt><tt class="py-op">(</tt><tt class="py-name">item</tt><tt class="py-op">)</tt> </tt>
<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">child</tt> <tt class="py-keyword">in</tt> <tt class="py-name">item</tt><tt class="py-op">:</tt> </tt>
<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">fn</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-string">'do_'</tt> <tt class="py-op">+</tt> <tt class="py-name">child</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt><tt class="py-op">,</tt> </tt>
<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="Pyblio.External.Citeseer.RelaxedBibTeX.do_default
Pyblio.Parsers.Semantic.ISI.Reader.do_default
Pyblio.Parsers.Semantic.PubMed.Reader.do_default
Pyblio.Parsers.Semantic.WOK.Reader.do_default
Pyblio.Parsers.Syntax.BibTeX.Reader.do_default
Pyblio.Parsers.Syntax.ISI.Reader.do_default
Pyblio.Parsers.Syntax.RIS.Reader.do_default
Pyblio.Parsers.Syntax.XMLEndNote.Reader.do_default
Pyblio.Parsers.Syntax.XMLMARC.Reader.do_default
Pyblio.Parsers.Syntax.XMLMARC.SimpleReader.do_default" class="py-name" href="#" onclick="return doclink('link-57', 'do_default', 'link-8');">do_default</a></tt><tt class="py-op">)</tt> </tt>
<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-name">fn</tt><tt class="py-op">(</tt><tt class="py-name">child</tt><tt class="py-op">)</tt> </tt>
<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> </tt>
<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name" targets="Method Pyblio.Parsers.Semantic.BibTeX.Reader.record_end()=Pyblio.Parsers.Semantic.BibTeX.Reader-class.html#record_end,Method Pyblio.Parsers.Semantic.PubMed.Reader.record_end()=Pyblio.Parsers.Semantic.PubMed.Reader-class.html#record_end,Method Pyblio.Parsers.Semantic.WOK.Reader.record_end()=Pyblio.Parsers.Semantic.WOK.Reader-class.html#record_end,Method Pyblio.Parsers.Syntax.BibTeX.Reader.record_end()=Pyblio.Parsers.Syntax.BibTeX.Reader-class.html#record_end,Method Pyblio.Parsers.Syntax.BibTeX.Writer.record_end()=Pyblio.Parsers.Syntax.BibTeX.Writer-class.html#record_end,Method Pyblio.Parsers.Syntax.Tagged.Parser.record_end()=Pyblio.Parsers.Syntax.Tagged.Parser-class.html#record_end,Method Pyblio.Parsers.Syntax.Tagged.Reader.record_end()=Pyblio.Parsers.Syntax.Tagged.Reader-class.html#record_end,Method Pyblio.Parsers.Syntax.XMLEndNote.Reader.record_end()=Pyblio.Parsers.Syntax.XMLEndNote.Reader-class.html#record_end,Method Pyblio.Parsers.Syntax.XMLMARC.Reader.record_end()=Pyblio.Parsers.Syntax.XMLMARC.Reader-class.html#record_end"><a title="Pyblio.Parsers.Semantic.BibTeX.Reader.record_end
Pyblio.Parsers.Semantic.PubMed.Reader.record_end
Pyblio.Parsers.Semantic.WOK.Reader.record_end
Pyblio.Parsers.Syntax.BibTeX.Reader.record_end
Pyblio.Parsers.Syntax.BibTeX.Writer.record_end
Pyblio.Parsers.Syntax.Tagged.Parser.record_end
Pyblio.Parsers.Syntax.Tagged.Reader.record_end
Pyblio.Parsers.Syntax.XMLEndNote.Reader.record_end
Pyblio.Parsers.Syntax.XMLMARC.Reader.record_end" class="py-name" href="#" onclick="return doclink('link-58', 'record_end', 'link-58');">record_end</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> </tt>
<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-name">k</tt> <tt class="py-op">=</tt> <tt class="py-name">db</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-59', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">record</tt><tt class="py-op">)</tt> </tt>
<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-name">rs</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="Pyblio.Adapter.OneToOneAdapter.add
Pyblio.Adapter.ResultSetAdapter.add
Pyblio.Arrays.KeyArray.add
Pyblio.Parsers.Syntax.XMLEndNote.Reader.add
Pyblio.Parsers.Syntax.XMLMARC.Writer.add
Pyblio.Store.Database.add
Pyblio.Store.Record.add
Pyblio.Store.ResultSet.add
Pyblio.Store.ResultSetStore.add
Pyblio.Stores.bsddbstore.Database.add
Pyblio.Stores.filestore.Database.add
Pyblio.Stores.resultset.ResultSet.add" class="py-name" href="#" onclick="return doclink('link-60', 'add', 'link-9');">add</a></tt><tt class="py-op">(</tt><tt class="py-name">k</tt><tt class="py-op">)</tt> </tt>
<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> </tt>
<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">rs</tt> </tt>
</div></div><a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> </tt><script type="text/javascript">
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