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Pyblio.Parsers.Semantic.PubMed.Reader-class.html
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Pyblio.Parsers.Semantic.PubMed.Reader-class.html
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<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html
xmlns=
"http://www.w3.org/1999/xhtml"
xml:lang=
"en"
lang=
"en"
>
<head>
<title>
Pyblio.Parsers.Semantic.PubMed.Reader
</title>
<link
rel=
"stylesheet"
href=
"epydoc.css"
type=
"text/css"
/>
<script
type=
"text/javascript"
src=
"epydoc.js"
></script>
</head>
<body
bgcolor=
"white"
text=
"black"
link=
"blue"
vlink=
"#204080"
alink=
"#204080"
>
<!-- ==================== NAVIGATION BAR ==================== -->
<table
class=
"navbar"
border=
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cellpadding=
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bgcolor=
"#a0c0ff"
cellspacing=
"0"
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valign=
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href=
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<th>
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href=
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Trees
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<!-- Index link -->
<th>
<a
href=
"identifier-index.html"
>
Indices
</a>
</th>
<!-- Help link -->
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<a
href=
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Help
</a>
</th>
<!-- Project homepage -->
<th
class=
"navbar"
align=
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width=
"100%"
>
<table
border=
"0"
cellpadding=
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cellspacing=
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<tr><th
class=
"navbar"
align=
"center"
>
pyblio-core 1.3.4
</th>
</tr></table></th>
</tr>
</table>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
>
<tr
valign=
"top"
>
<td
width=
"100%"
>
<span
class=
"breadcrumbs"
>
<a
href=
"Pyblio-module.html"
>
Package
Pyblio
</a>
::
<a
href=
"Pyblio.Parsers-module.html"
>
Package
Parsers
</a>
::
<a
href=
"Pyblio.Parsers.Semantic-module.html"
>
Package
Semantic
</a>
::
<a
href=
"Pyblio.Parsers.Semantic.PubMed-module.html"
>
Module
PubMed
</a>
::
Class
Reader
</span>
</td>
<td>
<table
cellpadding=
"0"
cellspacing=
"0"
>
<!-- hide/show private -->
<tr><td
align=
"right"
><span
class=
"options"
>
[
<a
href=
"javascript:void(0);"
class=
"privatelink"
onclick=
"toggle_private();"
>
hide
private
</a>
]
</span></td></tr>
<tr><td
align=
"right"
><span
class=
"options"
>
[
<a
href=
"frames.html"
target=
"_top"
>
frames
</a
>
]
|
<a
href=
"Pyblio.Parsers.Semantic.PubMed.Reader-class.html"
target=
"_top"
>
no
frames
</a>
]
</span></td></tr>
</table>
</td>
</tr>
</table>
<!-- ==================== CLASS DESCRIPTION ==================== -->
<h1
class=
"epydoc"
>
Class Reader
</h1><span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader"
>
source
code
</a></span><br
/><br
/>
<pre
class=
"base-tree"
>
object --+
|
<strong
class=
"uidshort"
>
Reader
</strong>
</pre>
<hr
/>
Parse records as returned by PubMed's web service.
<br
/><br
/>
<!-- ==================== INSTANCE METHODS ==================== -->
<a
name=
"section-InstanceMethods"
></a>
<table
class=
"summary"
border=
"1"
cellpadding=
"3"
cellspacing=
"0"
width=
"100%"
bgcolor=
"white"
>
<tr
bgcolor=
"#70b0f0"
class=
"table-header"
>
<td
colspan=
"2"
class=
"table-header"
>
<table
border=
"0"
cellpadding=
"0"
cellspacing=
"0"
width=
"100%"
>
<tr
valign=
"top"
>
<td
align=
"left"
><span
class=
"table-header"
>
Instance Methods
</span></td>
<td
align=
"right"
valign=
"top"
><span
class=
"options"
>
[
<a
href=
"#section-InstanceMethods"
class=
"privatelink"
onclick=
"toggle_private();"
>
hide private
</a>
]
</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
href=
"Pyblio.Parsers.Semantic.PubMed.Reader-class.html#uid"
class=
"summary-sig-name"
>
uid
</a>
(
<span
class=
"summary-sig-arg"
>
self
</span>
)
</span><br
/>
Generate the display name of a record.
</td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.uid"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_default"
></a><span
class=
"summary-sig-name"
>
do_default
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span><br
/>
Called when no specific handler exist.
</td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_default"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_MedlineJournalInfo"
></a><span
class=
"summary-sig-name"
>
do_MedlineJournalInfo
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_MedlineJournalInfo"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_Article"
></a><span
class=
"summary-sig-name"
>
do_Article
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_Article"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_Article_ArticleTitle"
></a><span
class=
"summary-sig-name"
>
do_Article_ArticleTitle
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_Article_ArticleTitle"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_Article_Abstract"
></a><span
class=
"summary-sig-name"
>
do_Article_Abstract
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_Article_Abstract"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_Article_Journal"
></a><span
class=
"summary-sig-name"
>
do_Article_Journal
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_Article_Journal"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_Article_AuthorList"
></a><span
class=
"summary-sig-name"
>
do_Article_AuthorList
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_Article_AuthorList"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_Article_Pagination"
></a><span
class=
"summary-sig-name"
>
do_Article_Pagination
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_Article_Pagination"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"do_PMID"
></a><span
class=
"summary-sig-name"
>
do_PMID
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
node
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.do_PMID"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"record_begin"
></a><span
class=
"summary-sig-name"
>
record_begin
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.record_begin"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"record_end"
></a><span
class=
"summary-sig-name"
>
record_end
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.record_end"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<table
width=
"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
>
<tr>
<td><span
class=
"summary-sig"
><a
name=
"parse"
></a><span
class=
"summary-sig-name"
>
parse
</span>
(
<span
class=
"summary-sig-arg"
>
self
</span>
,
<span
class=
"summary-sig-arg"
>
fd
</span>
,
<span
class=
"summary-sig-arg"
>
db
</span>
,
<span
class=
"summary-sig-arg"
>
rs
</span>
=
<span
class=
"summary-sig-default"
>
None
</span>
)
</span></td>
<td
align=
"right"
valign=
"top"
>
<span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.parse"
>
source
code
</a></span>
</td>
</tr>
</table>
</td>
</tr>
<tr>
<td
colspan=
"2"
class=
"summary"
>
<p
class=
"indent-wrapped-lines"
><b>
Inherited from
<code>
object
</code></b>
:
<code>
__delattr__
</code>
,
<code>
__getattribute__
</code>
,
<code>
__hash__
</code>
,
<code>
__init__
</code>
,
<code>
__new__
</code>
,
<code>
__reduce__
</code>
,
<code>
__reduce_ex__
</code>
,
<code>
__repr__
</code>
,
<code>
__setattr__
</code>
,
<code>
__str__
</code>
</p>
</td>
</tr>
</table>
<!-- ==================== CLASS VARIABLES ==================== -->
<a
name=
"section-ClassVariables"
></a>
<table
class=
"summary"
border=
"1"
cellpadding=
"3"
cellspacing=
"0"
width=
"100%"
bgcolor=
"white"
>
<tr
bgcolor=
"#70b0f0"
class=
"table-header"
>
<td
colspan=
"2"
class=
"table-header"
>
<table
border=
"0"
cellpadding=
"0"
cellspacing=
"0"
width=
"100%"
>
<tr
valign=
"top"
>
<td
align=
"left"
><span
class=
"table-header"
>
Class Variables
</span></td>
<td
align=
"right"
valign=
"top"
><span
class=
"options"
>
[
<a
href=
"#section-ClassVariables"
class=
"privatelink"
onclick=
"toggle_private();"
>
hide private
</a>
]
</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td
width=
"15%"
align=
"right"
valign=
"top"
class=
"summary"
>
<span
class=
"summary-type"
>
</span>
</td><td
class=
"summary"
>
<a
name=
"log"
></a><span
class=
"summary-name"
>
log
</span>
=
<code
title=
"logging.getLogger('pyblio.import.pubmed')"
>
logging.getLogger('pyblio.import.pubmed')
</code>
</td>
</tr>
</table>
<!-- ==================== PROPERTIES ==================== -->
<a
name=
"section-Properties"
></a>
<table
class=
"summary"
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"1"
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"3"
cellspacing=
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<table
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cellpadding=
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cellspacing=
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width=
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>
<tr
valign=
"top"
>
<td
align=
"left"
><span
class=
"table-header"
>
Properties
</span></td>
<td
align=
"right"
valign=
"top"
><span
class=
"options"
>
[
<a
href=
"#section-Properties"
class=
"privatelink"
onclick=
"toggle_private();"
>
hide private
</a>
]
</span></td>
</tr>
</table>
</td>
</tr>
<tr>
<td
colspan=
"2"
class=
"summary"
>
<p
class=
"indent-wrapped-lines"
><b>
Inherited from
<code>
object
</code></b>
:
<code>
__class__
</code>
</p>
</td>
</tr>
</table>
<!-- ==================== METHOD DETAILS ==================== -->
<a
name=
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border=
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cellspacing=
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<tr
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<td
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"left"
><span
class=
"table-header"
>
Method Details
</span></td>
<td
align=
"right"
valign=
"top"
><span
class=
"options"
>
[
<a
href=
"#section-MethodDetails"
class=
"privatelink"
onclick=
"toggle_private();"
>
hide private
</a>
]
</span></td>
</tr>
</table>
</td>
</tr>
</table>
<a
name=
"uid"
></a>
<div>
<table
class=
"details"
border=
"1"
cellpadding=
"3"
cellspacing=
"0"
width=
"100%"
bgcolor=
"white"
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<table
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"100%"
cellpadding=
"0"
cellspacing=
"0"
border=
"0"
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<tr
valign=
"top"
><td>
<h3
class=
"epydoc"
><span
class=
"sig"
><span
class=
"sig-name"
>
uid
</span>
(
<span
class=
"sig-arg"
>
self
</span>
)
</span>
</h3>
</td><td
align=
"right"
valign=
"top"
><span
class=
"codelink"
><a
href=
"Pyblio.Parsers.Semantic.PubMed-pysrc.html#Reader.uid"
>
source
code
</a></span>
</td>
</table>
<p>
Generate the display name of a record.
</p>
Used when outputting a warning for instance.
<dl
class=
"fields"
>
</dl>
</td></tr></table>
</div>
<br
/>
<!-- ==================== NAVIGATION BAR ==================== -->
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<!-- Home link -->
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Home
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<!-- Tree link -->
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>
Indices
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</th>
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>
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</a>
</th>
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<table
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cellpadding=
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"0"
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<tr><th
class=
"navbar"
align=
"center"
>
pyblio-core 1.3.4
</th>
</tr></table></th>
</tr>
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class=
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>
Generated by Epydoc 3.0beta1 on Thu Sep 13 21:54:19 2007
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<a
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"http://epydoc.sourceforge.net"
>
http://epydoc.sourceforge.net
</a>
</td>
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</table>
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"text/javascript"
>
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