Page Menu
Home
c4science
Search
Configure Global Search
Log In
Files
F120402907
Pyblio.External.PubMed.PubMed-class.html
No One
Temporary
Actions
Download File
Edit File
Delete File
View Transforms
Subscribe
Mute Notifications
Award Token
Subscribers
None
File Metadata
Details
File Info
Storage
Attached
Created
Fri, Jul 4, 03:05
Size
16 KB
Mime Type
text/xml
Expires
Sun, Jul 6, 03:05 (1 d, 23 h)
Engine
blob
Format
Raw Data
Handle
27171284
Attached To
R3596 pybliographer
Pyblio.External.PubMed.PubMed-class.html
View Options
<?xml version="1.0" encoding="iso-8859-1"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
"DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
<title>Pyblio.External.PubMed.PubMed</title>
<link rel="stylesheet" href="epydoc.css" type="text/css"></link>
</head>
<body bgcolor="white" text="black" link="blue" vlink="#204080"
alink="#204080">
<!-- =========== START OF NAVBAR =========== -->
<table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0">
<tr valign="center">
<th class="navbar"> <a class="navbar" href="Pyblio-module.html">Home</a> </th>
<th class="navbar"> <a class="navbar" href="trees.html">Trees</a> </th>
<th class="navbar"> <a class="navbar" href="indices.html">Index</a> </th>
<th class="navbar"> <a class="navbar" href="help.html">Help</a> </th>
<th class="navbar" align="right" width="100%">
<table border="0" cellpadding="0" cellspacing="0">
<tr><th class="navbar" align="center">
<p class="nomargin">
pybliographer 1.3.3
</p></th></tr></table>
</th>
</tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
<tr valign="top">
<td width="100%">
<font size="-1"><b class="breadcrumbs">
<a href="Pyblio-module.html">Package Pyblio</a> ::
<a href="Pyblio.External-module.html">Package External</a> ::
<a href="Pyblio.External.PubMed-module.html">Module PubMed</a> ::
Class PubMed
</b></font></br>
</td>
<td><table cellpadding="0" cellspacing="0">
<tr><td align="right"><font size="-2">[show private | <a href="../public/Pyblio.External.PubMed.PubMed-class.html">hide private</a>]</font></td></tr>
<tr><td align="right"><font size="-2">[<a href="frames.html"target="_top">frames</a> | <a href="Pyblio.External.PubMed.PubMed-class.html" target="_top">no frames</a>]</font></td></tr>
</table></td>
</tr></table>
<!-- =========== START OF CLASS DESCRIPTION =========== -->
<h2 class="class">Type PubMed</h2>
<pre class="base-tree">
<a href="__builtin__.object-class.html"><code>object</code></a> --+
|
<b>PubMed</b>
</pre><br />
<hr/>
A connection to the PubMed database
<hr/>
<!-- =========== START OF METHOD SUMMARY =========== -->
<table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="summary">
<th colspan="2">Method Summary</th></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><a name="__init__"></a><span class="summary-sig"><span class="summary-sig-name">__init__</span>(<span class=summary-sig-arg>self</span>,
<span class=summary-sig-arg>db</span>)</span></code>
</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="Pyblio.External.PubMed.PubMed-class.html#cancel" class="summary-sig-name"><code>cancel</code></a>(<span class=summary-sig-arg>self</span>)</span></code>
<br />
Cancel a running query.</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><a name="count"></a><span class="summary-sig"><span class="summary-sig-name">count</span>(<span class=summary-sig-arg>self</span>,
<span class=summary-sig-arg>query</span>,
<span class=summary-sig-arg>db</span>)</span></code>
</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><a name="search"></a><span class="summary-sig"><span class="summary-sig-name">search</span>(<span class=summary-sig-arg>self</span>,
<span class=summary-sig-arg>query</span>,
<span class=summary-sig-arg>maxhits</span>,
<span class=summary-sig-arg>db</span>)</span></code>
</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><a name="_query"></a><span class="summary-sig"><span class="summary-sig-name">_query</span>(<span class=summary-sig-arg>self</span>,
<span class=summary-sig-arg>service</span>,
<span class=summary-sig-arg>args</span>,
<span class="summary-sig-kwarg">**kargs</span>)</span></code>
</td></tr>
<tr bgcolor="#e8f0f8" class="group">
<th colspan="2"> Inherited from object</th></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__delattr__" class="summary-sig-name"><code>__delattr__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
<br />
x.__delattr__('name') <==> del x.name</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__getattribute__" class="summary-sig-name"><code>__getattribute__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
<br />
x.__getattribute__('name') <==> x.name</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__hash__" class="summary-sig-name"><code>__hash__</code></a>(<span class=summary-sig-arg>x</span>)</span></code>
<br />
x.__hash__() <==> hash(x)</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__new__" class="summary-sig-name"><code>__new__</code></a>(<span class=summary-sig-arg>T</span>,
<span class=summary-sig-arg>S</span>,
<span class="summary-sig-vararg">...</span>)</span></code>
<br />
T.__new__(S, ...) -> a new object with type S, a subtype of T</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__reduce__" class="summary-sig-name"><code>__reduce__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
<br />
helper for pickle</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__reduce_ex__" class="summary-sig-name"><code>__reduce_ex__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
<br />
helper for pickle</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__repr__" class="summary-sig-name"><code>__repr__</code></a>(<span class=summary-sig-arg>x</span>)</span></code>
<br />
x.__repr__() <==> repr(x)</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__setattr__" class="summary-sig-name"><code>__setattr__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
<br />
x.__setattr__('name', value) <==> x.name = value</td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td>
<td><code><span class="summary-sig"><a href="__builtin__.object-class.html#__str__" class="summary-sig-name"><code>__str__</code></a>(<span class=summary-sig-arg>x</span>)</span></code>
<br />
x.__str__() <==> str(x)</td></tr>
</table><br />
<!-- =========== START OF CLASS VARIABLE SUMMARY =========== -->
<table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="summary">
<th colspan="2">Class Variable Summary</th></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>str</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#adminEmail"><code>adminEmail</code></a></b> = <span title="'webmaster@pybliographer.org'"><code><span class="variable-quote">'</span>webmaster@pybliographer.org<span class="variable-quote">'</span> </code>
</span></td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>str</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#baseURL"><code>baseURL</code></a></b> = <span title="'http://eutils.ncbi.nlm.nih.gov/entrez/eutils'"><code><span class="variable-quote">'</span>http://eutils.ncbi.nlm.nih.gov/entrez/eutils<span class="variable-quote">'<span class="variable-ellipsis">...</span></code>
</span></td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>int</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#BATCH_SIZE"><code>BATCH_SIZE</code></a></b> = <span title="500">500 </span></td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>Logger</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#log"><code>log</code></a></b> = <span title="<logging.Logger instance at 0xa571ec0c>"><code><logging.Logger instance at 0xa571ec0c> </code>
</span></td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>str</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#SRV_FETCH"><code>SRV_FETCH</code></a></b> = <span title="'/efetch.fcgi'"><code><span class="variable-quote">'</span>/efetch.fcgi<span class="variable-quote">'</span> </code>
</span></td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>str</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#SRV_SEARCH"><code>SRV_SEARCH</code></a></b> = <span title="'/esearch.fcgi'"><code><span class="variable-quote">'</span>/esearch.fcgi<span class="variable-quote">'</span> </code>
</span></td></tr>
<tr><td align="right" valign="top" width="15%"><font size="-1"><code>str</code></font></td>
<td><b><a href="Pyblio.External.PubMed.PubMed-class.html#toolName"><code>toolName</code></a></b> = <span title="'pybliographer'"><code><span class="variable-quote">'</span>pybliographer<span class="variable-quote">'</span> </code>
</span></td></tr>
</table><br />
<!-- =========== START OF METHOD DETAILS =========== -->
<table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="details">
<th colspan="2">Method Details</th></tr>
</table>
<a name="cancel"></a>
<table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
<h3><span class="sig"><span class="sig-name">cancel</span>(<span class=sig-arg>self</span>)</span>
</h3>
Cancel a running query. The database is not reverted to its original
state.
<dl><dt></dt><dd>
</dd></dl>
</td></tr></table>
<br />
<!-- =========== START OF CLASS VARIABLE DETAILS =========== -->
<table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="details">
<th colspan="2">Class Variable Details</th></tr>
</table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="adminEmail"></a>
<h3>adminEmail</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>str</code>
</dd>
<span title="'webmaster@pybliographer.org'"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
<span class="variable-quote">'</span>webmaster@pybliographer.org<span class="variable-quote">'</span> </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="baseURL"></a>
<h3>baseURL</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>str</code>
</dd>
<span title="'http://eutils.ncbi.nlm.nih.gov/entrez/eutils'"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
<span class="variable-quote">'</span>http://eutils.ncbi.nlm.nih.gov/entrez/eutils<span class="variable-quote">'</span> </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="BATCH_SIZE"></a>
<h3>BATCH_SIZE</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>int</code>
</dd>
<span title="500"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
500 </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="log"></a>
<h3>log</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>Logger</code>
</dd>
<span title="<logging.Logger instance at 0xa571ec0c>"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
<logging.Logger instance at 0xa571ec0c> </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="SRV_FETCH"></a>
<h3>SRV_FETCH</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>str</code>
</dd>
<span title="'/efetch.fcgi'"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
<span class="variable-quote">'</span>/efetch.fcgi<span class="variable-quote">'</span> </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="SRV_SEARCH"></a>
<h3>SRV_SEARCH</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>str</code>
</dd>
<span title="'/esearch.fcgi'"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
<span class="variable-quote">'</span>/esearch.fcgi<span class="variable-quote">'</span> </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<table width="100%" class="var-details" bgcolor="#e0e0e0"><tr><td>
<a name="toolName"></a>
<h3>toolName</h3>
<dl>
<dt></dt>
<dd>
<dl>
<dt><b>Type:</b></dt>
<dd>
<code>str</code>
</dd>
<span title="'pybliographer'"> <dt><b>Value:</b></dt>
<dd><table><tr><td>
<pre class="variable">
<span class="variable-quote">'</span>pybliographer<span class="variable-quote">'</span> </pre>
</td></tr></table></dd>
</span> </dl>
</dd>
</dl></td></tr></table>
<br />
<!-- =========== START OF NAVBAR =========== -->
<table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0">
<tr valign="center">
<th class="navbar"> <a class="navbar" href="Pyblio-module.html">Home</a> </th>
<th class="navbar"> <a class="navbar" href="trees.html">Trees</a> </th>
<th class="navbar"> <a class="navbar" href="indices.html">Index</a> </th>
<th class="navbar"> <a class="navbar" href="help.html">Help</a> </th>
<th class="navbar" align="right" width="100%">
<table border="0" cellpadding="0" cellspacing="0">
<tr><th class="navbar" align="center">
<p class="nomargin">
pybliographer 1.3.3
</p></th></tr></table>
</th>
</tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%">
<tr>
<td align="left"><font size="-2">Generated by Epydoc 2.1 on Sun Sep 24 23:52:44 2006</font></td>
<td align="right"><a href="http://epydoc.sourceforge.net"
><font size="-2">http://epydoc.sf.net</font></a></td>
</tr>
</table>
</body>
</html>
Event Timeline
Log In to Comment